ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37e24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549989.1| Oryza sativa (japonica cultivar-group), mRNA 333 4e-88
2dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 4e-88
3gb|AY104137.1| Zea mays PCO146094 mRNA sequence 311 2e-81
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
5dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
6dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
7emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chr... 48 0.037
8ref|NM_127245.2| Arabidopsis thaliana ubiquitin conjugating enzy... 46 0.14
9ref|NM_179887.1| Arabidopsis thaliana ubiquitin conjugating enzy... 46 0.14
10gb|AY091326.1| Arabidopsis thaliana putative ubiquitin-conjugati... 46 0.14
11gb|AY074292.1| Arabidopsis thaliana putative E2, ubiquitin-conju... 46 0.14
12gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete s... 46 0.14
13gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE... 46 0.14
14gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 ma... 46 0.14
15gb|DQ027037.1| Arabidopsis thaliana ubiquitinating enzyme (At2g3... 46 0.14
16emb|CR655603.2|CNS0F4U1 Tetraodon nigroviridis full-length cDNA 44 0.57
17gb|AC004052.1|AC004052 Homo sapiens chromosome 4 clone B209B10 m... 44 0.57
18ref|XM_475903.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
19gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
20gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 geno... 42 2.3
21gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 42 2.3
22ref|XM_961052.1| Plasmodium falciparum 3D7 hypothetical protein ... 42 2.3
23emb|AL359180.17| Human DNA sequence from clone RP11-320G21 on ch... 42 2.3
24emb|CR382399.1| Plasmodium falciparum chromosome 6, complete seq... 42 2.3
25emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 2.3
26emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 42 2.3
27emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, B... 42 2.3
28gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 2.3
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
31gb|AC084666.1|CBRG47D14 Caenorhabditis briggsae cosmid G47D14, c... 42 2.3
32gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
33gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, com... 40 8.9
34ref|XM_462497.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.9
35ref|XM_455217.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F03036g ... 40 8.9
36emb|CR381650.15| Zebrafish DNA sequence from clone CH211-129F24 ... 40 8.9
37gb|DQ493927.1| Homo sapiens fibroblast growth factor receptor 2 ... 40 8.9
38emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 i... 40 8.9
39gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's H... 40 8.9
40emb|AL627308.20| Human DNA sequence from clone RP11-211A18 on ch... 40 8.9
41emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 40 8.9
42emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.9
43gb|AC153523.7| Mus musculus 10 BAC RP23-463C2 (Roswell Park Canc... 40 8.9
44emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 8.9
45emb|AJ556169.1|ACA556169 Aplysia californica mRNA for hemocyanin... 40 8.9
46gb|AF487553.1| Homo sapiens fibroblast growth factor receptor 2 ... 40 8.9
47gb|AC100779.2| Homo sapiens chromosome 18, clone RP11-761D8, com... 40 8.9
48gb|AC107022.4| Homo sapiens 3 BAC RP11-417H23 (Roswell Park Canc... 40 8.9
49gb|AC009988.12| Homo sapiens chromosome 10 clone RP11-62L18, com... 40 8.9
50dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 8.9
51gb|AC063944.25| Homo sapiens 3 BAC RP11-446H18 (Roswell Park Can... 40 8.9
52gb|AF360695.3|AF410480S2 Homo sapiens keratinocyte growth factor... 40 8.9
53gb|AC091169.7| Homo sapiens chromosome 18, clone RP11-809A17, co... 40 8.9
54gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.9
55gb|AC158602.6| Mus musculus 10 BAC RP23-136G23 (Roswell Park Can... 40 8.9
56gb|AC093381.5| Homo sapiens BAC clone RP11-436J10 from 2, comple... 40 8.9
57gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cance... 40 8.9
58emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chr... 40 8.9
59dbj|AK115981.1| Ciona intestinalis cDNA, clone:citb002p15, full ... 40 8.9
60emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chr... 40 8.9
61gb|AC087242.10| Homo sapiens 12 BAC RP11-361I14 (Roswell Park Ca... 40 8.9 
>ref|XM_549989.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3562

 Score =  333 bits (168), Expect = 4e-88
 Identities = 264/296 (89%)
 Strand = Plus / Minus

                                                                        
Query: 360  ccttgcaagtaggcctcacaagctttgagaatgtagtgcccacgcttgcagaagtgactt 419
            |||||||| |||||||||||||||||||||||||| |  ||||||||| ||||||| || 
Sbjct: 3263 ccttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctc 3204

                                                                        
Query: 420  ttcacaaaatcctcgaaattcataggaggccgcctcaagatatacaacatggatttcacg 479
            ||  |||| |||||||||| ||| ||||| ||||||| |||||||||||||||||||| |
Sbjct: 3203 tttgcaaagtcctcgaaatgcattggaggtcgcctcaggatatacaacatggatttcaag 3144

                                                                        
Query: 480  cttagcagatatgtgttttcattgtatggcagtgcattcttctccccttcaacagtaccg 539
            || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| 
Sbjct: 3143 ctcagcagatatgtgttctcattatatggcaatgcattcttctccccttcaacagtacca 3084

                                                                        
Query: 540  acttgcttctcatatccagcttcattgaaatagggcttttcattgagaactagtccctga 599
            |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |  ||||||
Sbjct: 3083 acttgcttctcatagccagcttcattaaaataaggcttttcatttagaaccaagccctga 3024

                                                                    
Query: 600  agtgagactagtacttggagaatactagatgaggatggatcccatacttcattccc 655
            ||||| || || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3023 agtgaaaccaggacttggagaatactggatgatgatggatcccatacttcattccc 2968
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>dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P14, full
            insert sequence
          Length = 3560

 Score =  333 bits (168), Expect = 4e-88
 Identities = 264/296 (89%)
 Strand = Plus / Minus

                                                                        
Query: 360  ccttgcaagtaggcctcacaagctttgagaatgtagtgcccacgcttgcagaagtgactt 419
            |||||||| |||||||||||||||||||||||||| |  ||||||||| ||||||| || 
Sbjct: 3261 ccttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctc 3202

                                                                        
Query: 420  ttcacaaaatcctcgaaattcataggaggccgcctcaagatatacaacatggatttcacg 479
            ||  |||| |||||||||| ||| ||||| ||||||| |||||||||||||||||||| |
Sbjct: 3201 tttgcaaagtcctcgaaatgcattggaggtcgcctcaggatatacaacatggatttcaag 3142

                                                                        
Query: 480  cttagcagatatgtgttttcattgtatggcagtgcattcttctccccttcaacagtaccg 539
            || |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| 
Sbjct: 3141 ctcagcagatatgtgttctcattatatggcaatgcattcttctccccttcaacagtacca 3082

                                                                        
Query: 540  acttgcttctcatatccagcttcattgaaatagggcttttcattgagaactagtccctga 599
            |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |  ||||||
Sbjct: 3081 acttgcttctcatagccagcttcattaaaataaggcttttcatttagaaccaagccctga 3022

                                                                    
Query: 600  agtgagactagtacttggagaatactagatgaggatggatcccatacttcattccc 655
            ||||| || || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3021 agtgaaaccaggacttggagaatactggatgatgatggatcccatacttcattccc 2966
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>gb|AY104137.1| Zea mays PCO146094 mRNA sequence
          Length = 990

 Score =  311 bits (157), Expect = 2e-81
 Identities = 262/297 (88%)
 Strand = Plus / Minus

                                                                       
Query: 359 tccttgcaagtaggcctcacaagctttgagaatgtagtgcccacgcttgcagaagtgact 418
           ||||||||| || |||||||| ||||| || |||||||| |||||||||| |||||| ||
Sbjct: 617 tccttgcaaatatgcctcacaggctttaaggatgtagtgaccacgcttgcggaagtggct 558

                                                                       
Query: 419 tttcacaaaatcctcgaaattcataggaggccgcctcaagatatacaacatggatttcac 478
            |||||||||||||| |||| || ||||||||| ||||| ||||||| ||||||||||||
Sbjct: 557 cttcacaaaatcctcaaaatgcaaaggaggccgtctcaatatatacagcatggatttcac 498

                                                                       
Query: 479 gcttagcagatatgtgttttcattgtatggcagtgcattcttctccccttcaacagtacc 538
           ||| ||||| || || || ||||| || |||| |||||||||||||||||||||||||||
Sbjct: 497 gctcagcaggtacgtattctcattatacggcactgcattcttctccccttcaacagtacc 438

                                                                       
Query: 539 gacttgcttctcatatccagcttcattgaaatagggcttttcattgagaactagtccctg 598
            |||||||||||||| ||||| ||||| |||||||| |||||||||||||| | ||||||
Sbjct: 437 aacttgcttctcatacccagcctcattaaaatagggtttttcattgagaaccaatccctg 378

                                                                    
Query: 599 aagtgagactagtacttggagaatactagatgaggatggatcccatacttcattccc 655
           |||||| |||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 377 aagtgaaactagtacttggagaatacttgatgatgatggatcccaaacttcgttccc 321



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 62  aaacaacaaatgttgaatgtacatttatacggaaacagc 100
           ||||||||||  ||||||||||||||||||| |||||||
Sbjct: 933 aaacaacaaactttgaatgtacatttatacgaaaacagc 895
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  262 bits (132), Expect = 1e-66
 Identities = 192/212 (90%)
 Strand = Plus / Minus

                                                                           
Query: 444     ggaggccgcctcaagatatacaacatggatttcacgcttagcagatatgtgttttcattg 503
               ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||| 
Sbjct: 1425927 ggaggtcgcctcaggatatacaacatggatttcaagctcagcagatatgtgttctcatta 1425868

                                                                           
Query: 504     tatggcagtgcattcttctccccttcaacagtaccgacttgcttctcatatccagcttca 563
               ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 1425867 tatggcaatgcattcttctccccttcaacagtaccaacttgcttctcatagccagcttca 1425808

                                                                           
Query: 564     ttgaaatagggcttttcattgagaactagtccctgaagtgagactagtacttggagaata 623
               || ||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||
Sbjct: 1425807 ttaaaataaggcttttcatttagaaccaagccctgaagtgaaaccaggacttggagaata 1425748

                                               
Query: 624     ctagatgaggatggatcccatacttcattccc 655
               || ||||| |||||||||||||||||||||||
Sbjct: 1425747 ctggatgatgatggatcccatacttcattccc 1425716



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                           
Query: 360     ccttgcaagtaggcctcacaagctttgagaatgtagtgcccacgcttgcagaagtgactt 419
               |||||||| |||||||||||||||||||||||||| |  ||||||||| ||||||| || 
Sbjct: 1426351 ccttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctc 1426292

                                  
Query: 420     ttcacaaaatcctcgaaat 438
               ||  |||| ||||||||||
Sbjct: 1426291 tttgcaaagtcctcgaaat 1426273
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>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0037C04
          Length = 137879

 Score =  262 bits (132), Expect = 1e-66
 Identities = 192/212 (90%)
 Strand = Plus / Minus

                                                                          
Query: 444    ggaggccgcctcaagatatacaacatggatttcacgcttagcagatatgtgttttcattg 503
              ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||| 
Sbjct: 123978 ggaggtcgcctcaggatatacaacatggatttcaagctcagcagatatgtgttctcatta 123919

                                                                          
Query: 504    tatggcagtgcattcttctccccttcaacagtaccgacttgcttctcatatccagcttca 563
              ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 123918 tatggcaatgcattcttctccccttcaacagtaccaacttgcttctcatagccagcttca 123859

                                                                          
Query: 564    ttgaaatagggcttttcattgagaactagtccctgaagtgagactagtacttggagaata 623
              || ||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||
Sbjct: 123858 ttaaaataaggcttttcatttagaaccaagccctgaagtgaaaccaggacttggagaata 123799

                                              
Query: 624    ctagatgaggatggatcccatacttcattccc 655
              || ||||| |||||||||||||||||||||||
Sbjct: 123798 ctggatgatgatggatcccatacttcattccc 123767



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                          
Query: 360    ccttgcaagtaggcctcacaagctttgagaatgtagtgcccacgcttgcagaagtgactt 419
              |||||||| |||||||||||||||||||||||||| |  ||||||||| ||||||| || 
Sbjct: 124402 ccttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctc 124343

                                 
Query: 420    ttcacaaaatcctcgaaat 438
              ||  |||| ||||||||||
Sbjct: 124342 tttgcaaagtcctcgaaat 124324
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>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score =  262 bits (132), Expect = 1e-66
 Identities = 192/212 (90%)
 Strand = Plus / Minus

                                                                         
Query: 444   ggaggccgcctcaagatatacaacatggatttcacgcttagcagatatgtgttttcattg 503
             ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||| 
Sbjct: 75548 ggaggtcgcctcaggatatacaacatggatttcaagctcagcagatatgtgttctcatta 75489

                                                                         
Query: 504   tatggcagtgcattcttctccccttcaacagtaccgacttgcttctcatatccagcttca 563
             ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 75488 tatggcaatgcattcttctccccttcaacagtaccaacttgcttctcatagccagcttca 75429

                                                                         
Query: 564   ttgaaatagggcttttcattgagaactagtccctgaagtgagactagtacttggagaata 623
             || ||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||
Sbjct: 75428 ttaaaataaggcttttcatttagaaccaagccctgaagtgaaaccaggacttggagaata 75369

                                             
Query: 624   ctagatgaggatggatcccatacttcattccc 655
             || ||||| |||||||||||||||||||||||
Sbjct: 75368 ctggatgatgatggatcccatacttcattccc 75337



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                         
Query: 360   ccttgcaagtaggcctcacaagctttgagaatgtagtgcccacgcttgcagaagtgactt 419
             |||||||| |||||||||||||||||||||||||| |  ||||||||| ||||||| || 
Sbjct: 75972 ccttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctc 75913

                                
Query: 420   ttcacaaaatcctcgaaat 438
             ||  |||| ||||||||||
Sbjct: 75912 tttgcaaagtcctcgaaat 75894
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>emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chromosome 4, complete
              sequence
          Length = 233077

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 283    tgaagcccatggagcaggagtact 306
              ||||||||||||||||||||||||
Sbjct: 142736 tgaagcccatggagcaggagtact 142759
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>ref|NM_127245.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
            activating enzyme AT2G16920 mRNA, complete cds
          Length = 3665

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 532  cagtaccgacttgcttctcatatccagcttcattgaaatagggcttt 578
            |||| ||||| ||||| ||||| || |||||||||||||| ||||||
Sbjct: 2985 cagttccgacctgcttatcatacccggcttcattgaaataaggcttt 2939
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>ref|NM_179887.1| Arabidopsis thaliana ubiquitin conjugating enzyme AT2G33770 mRNA,
            complete cds
          Length = 4102

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 543  tgcttctcatatccagcttcattgaaatagggcttttcattgagaac 589
            ||||| ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 3539 tgcttatcatagccagcttcattgaagtaaggcttctcattcagaac 3493
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>gb|AY091326.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2
            (At2g33770) mRNA, complete cds
          Length = 2755

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 543  tgcttctcatatccagcttcattgaaatagggcttttcattgagaac 589
            ||||| ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 2387 tgcttatcatagccagcttcattgaagtaaggcttctcattcagaac 2341
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>gb|AY074292.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme
            (At2g33770) mRNA, complete cds
          Length = 4118

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 543  tgcttctcatatccagcttcattgaaatagggcttttcattgagaac 589
            ||||| ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 3539 tgcttatcatagccagcttcattgaagtaaggcttctcattcagaac 3493
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>gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete sequence
          Length = 119041

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 553   atccagcttcattgaaatagggctttt 579
             ||||||||||||||||||| |||||||
Sbjct: 71682 atccagcttcattgaaataaggctttt 71656
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>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
             sequence
          Length = 114144

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 543   tgcttctcatatccagcttcattgaaatagggcttttcattgagaac 589
             ||||| ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 31259 tgcttatcatagccagcttcattgaagtaaggcttctcattcagaac 31305
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>gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 map mi398, complete
             sequence
          Length = 93861

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 532   cagtaccgacttgcttctcatatccagcttcattgaaatagggcttt 578
             |||| ||||| ||||| ||||| || |||||||||||||| ||||||
Sbjct: 42190 cagttccgacctgcttatcatacccggcttcattgaaataaggcttt 42236
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>gb|DQ027037.1| Arabidopsis thaliana ubiquitinating enzyme (At2g33770) mRNA, complete
            cds
          Length = 2724

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 543  tgcttctcatatccagcttcattgaaatagggcttttcattgagaac 589
            ||||| ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 2387 tgcttatcatagccagcttcattgaagtaaggcttctcattcagaac 2341
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>emb|CR655603.2|CNS0F4U1 Tetraodon nigroviridis full-length cDNA
          Length = 1524

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 46  aaatgttcagataataaaacaa 67
           ||||||||||||||||||||||
Sbjct: 407 aaatgttcagataataaaacaa 428
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>gb|AC004052.1|AC004052 Homo sapiens chromosome 4 clone B209B10 map 4q25, complete sequence
          Length = 156490

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 54    agataataaaacaacaaatgtt 75
             ||||||||||||||||||||||
Sbjct: 39516 agataataaaacaacaaatgtt 39537
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>ref|XM_475903.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2982

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 549  tcatatccagcttcattgaaatagggcttttcattgagaac 589
            ||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 2645 tcatagccagcctcattgaagtaaggtttttcattgagaac 2605
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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
              complete sequence
          Length = 144601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 549    tcatatccagcttcattgaaatagggcttttcattgagaac 589
              ||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 117024 tcatagccagcctcattgaagtaaggtttttcattgagaac 117064
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>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete
             sequence
          Length = 82909

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    gataataaaacaacaaatgttgaat 79
             |||||||||| ||||||||||||||
Sbjct: 71419 gataataaaaaaacaaatgttgaat 71443
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 338     gttcagcttgccgaccactgc 358
               |||||||||||||||||||||
Sbjct: 2512200 gttcagcttgccgaccactgc 2512180
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>ref|XM_961052.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0770c) partial
            mRNA
          Length = 5421

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   gataataaaacaacaaatgtt 75
            |||||||||||||||||||||
Sbjct: 4684 gataataaaacaacaaatgtt 4704
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>emb|AL359180.17| Human DNA sequence from clone RP11-320G21 on chromosome 13, complete
             sequence
          Length = 159229

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 64    acaacaaatgttgaatgtacattta 88
             |||||||||||||||| ||||||||
Sbjct: 99749 acaacaaatgttgaatttacattta 99773
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>emb|CR382399.1| Plasmodium falciparum chromosome 6, complete sequence; segment 2/5
          Length = 348174

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     gataataaaacaacaaatgtt 75
              |||||||||||||||||||||
Sbjct: 313800 gataataaaacaacaaatgtt 313780
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 629     tgaggatggatcccatacttc 649
               |||||||||||||||||||||
Sbjct: 1506231 tgaggatggatcccatacttc 1506211
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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    caaatgttgaatgtacattta 88
             |||||||||||||||||||||
Sbjct: 86287 caaatgttgaatgtacattta 86307
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>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project)
          Length = 101679

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    caaatgttgaatgtacattta 88
             |||||||||||||||||||||
Sbjct: 69814 caaatgttgaatgtacattta 69834
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 167     tgttcagctttcttgagcggc 187
               |||||||||||||||||||||
Sbjct: 2455857 tgttcagctttcttgagcggc 2455837
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 55       gataataaaacaacaaatgttgaat 79
                |||||||||| ||||||||||||||
Sbjct: 19219075 gataataaaaaaacaaatgttgaat 19219099
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 549      tcatatccagcttcattgaaatagggcttttcattgagaac 589
                ||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 27520894 tcatagccagcctcattgaagtaaggtttttcattgagaac 27520934
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>gb|AC084666.1|CBRG47D14 Caenorhabditis briggsae cosmid G47D14, complete sequence
          Length = 37034

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    ataataaaacaacaaatgttg 76
             |||||||||||||||||||||
Sbjct: 15889 ataataaaacaacaaatgttg 15909
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 55       gataataaaacaacaaatgttgaat 79
                |||||||||| ||||||||||||||
Sbjct: 19230351 gataataaaaaaacaaatgttgaat 19230375
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>gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, complete sequence
          Length = 190369

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   ggctgtgatcaaccttggca 261
             ||||||||||||||||||||
Sbjct: 63094 ggctgtgatcaaccttggca 63075
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>ref|XM_462497.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G23232g)
           partial mRNA
          Length = 1761

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 ctgaacccaagagaagcttt 145
           ||||||||||||||||||||
Sbjct: 883 ctgaacccaagagaagcttt 902
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>ref|XM_455217.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F03036g predicted mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 tcaacagtaccgacttgctt 547
           ||||||||||||||||||||
Sbjct: 491 tcaacagtaccgacttgctt 472
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>emb|CR381650.15| Zebrafish DNA sequence from clone CH211-129F24 in linkage group 7,
             complete sequence
          Length = 137625

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    taataaaacaacaaatgttg 76
             ||||||||||||||||||||
Sbjct: 33019 taataaaacaacaaatgttg 33038
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>gb|DQ493927.1| Homo sapiens fibroblast growth factor receptor 2 (bacteria-expressed
             kinase, keratinocyte growth factor receptor, craniofacial
             dysostosis 1, Crouzon syndrome, Pfeiffer syndrome,
             Jackson-Weiss syndrome) (FGFR2) gene, complete cds
          Length = 122913

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gatgatgatggttttcattt 31
             ||||||||||||||||||||
Sbjct: 61450 gatgatgatggttttcattt 61469
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>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7,
              complete sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    ttcattgtatggcagtgcat 516
              ||||||||||||||||||||
Sbjct: 103542 ttcattgtatggcagtgcat 103561
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>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 157107

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aataaaacaacaaatgttga 77
            ||||||||||||||||||||
Sbjct: 1239 aataaaacaacaaatgttga 1258
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>emb|AL627308.20| Human DNA sequence from clone RP11-211A18 on chromosome 1 Contains
            the 5' end of the CDC42BPA gene for CDC42 binding protein
            kinase alpha (DMPK-like), a cathepsin B (CTSB)
            pseudogene, a novel pseudogene and a CpG island, complete
            sequence
          Length = 124156

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 550  catatccagcttcattgaaa 569
            ||||||||||||||||||||
Sbjct: 3944 catatccagcttcattgaaa 3963
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>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
               hansenii
          Length = 2051428

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     ctgaacccaagagaagcttt 145
               ||||||||||||||||||||
Sbjct: 1781287 ctgaacccaagagaagcttt 1781306
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 528    tcaacagtaccgacttgctt 547
              ||||||||||||||||||||
Sbjct: 283949 tcaacagtaccgacttgctt 283968
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>gb|AC153523.7| Mus musculus 10 BAC RP23-463C2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 200141

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaatgttcagataataaaac 65
             ||||||||||||||||||||
Sbjct: 31841 aaatgttcagataataaaac 31822
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>emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 6/10
          Length = 298050

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 99     gcaggcggtttagtttgatcatgttttc 126
              |||||||||  |||||||||||||||||
Sbjct: 218369 gcaggcggtccagtttgatcatgttttc 218342
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>emb|AJ556169.1|ACA556169 Aplysia californica mRNA for hemocyanin (hc gene)
          Length = 11468

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ataataaaacaacaaatgtt 75
             ||||||||||||||||||||
Sbjct: 10656 ataataaaacaacaaatgtt 10637
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>gb|AF487553.1| Homo sapiens fibroblast growth factor receptor 2 (FGFR2) gene, exons 2
             through 18 and complete cds
          Length = 126467

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gatgatgatggttttcattt 31
             ||||||||||||||||||||
Sbjct: 58113 gatgatgatggttttcattt 58132
to top
>gb|AC100779.2| Homo sapiens chromosome 18, clone RP11-761D8, complete sequence
          Length = 196261

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 122  ttttctgaacccaagagaagcttt 145
            |||||||| |||||||||||||||
Sbjct: 3543 ttttctgatcccaagagaagcttt 3520
to top
>gb|AC107022.4| Homo sapiens 3 BAC RP11-417H23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agagaagctttgaatacaac 154
             ||||||||||||||||||||
Sbjct: 83018 agagaagctttgaatacaac 83037
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>gb|AC009988.12| Homo sapiens chromosome 10 clone RP11-62L18, complete sequence
          Length = 174398

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    gatgatgatggttttcattt 31
             ||||||||||||||||||||
Sbjct: 74304 gatgatgatggttttcattt 74285
to top
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 454     tcaagatatacaacatggat 473
               ||||||||||||||||||||
Sbjct: 1658799 tcaagatatacaacatggat 1658780
to top
>gb|AC063944.25| Homo sapiens 3 BAC RP11-446H18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180389

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   agagaagctttgaatacaac 154
             ||||||||||||||||||||
Sbjct: 83080 agagaagctttgaatacaac 83099
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>gb|AF360695.3|AF410480S2 Homo sapiens keratinocyte growth factor receptor 2 (FGFR2) gene, exons
             3 through 22 and complete cds, alternatively spliced
          Length = 94605

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gatgatgatggttttcattt 31
             ||||||||||||||||||||
Sbjct: 32464 gatgatgatggttttcattt 32483
to top
>gb|AC091169.7| Homo sapiens chromosome 18, clone RP11-809A17, complete sequence
          Length = 163138

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    ttttctgaacccaagagaagcttt 145
              |||||||| |||||||||||||||
Sbjct: 161070 ttttctgatcccaagagaagcttt 161047
to top
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     cttcggtcttcccgaggtgc 206
               ||||||||||||||||||||
Sbjct: 2777885 cttcggtcttcccgaggtgc 2777866
to top
>gb|AC158602.6| Mus musculus 10 BAC RP23-136G23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 182817

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    aaatgttcagataataaaac 65
             ||||||||||||||||||||
Sbjct: 53755 aaatgttcagataataaaac 53774
to top
>gb|AC093381.5| Homo sapiens BAC clone RP11-436J10 from 2, complete sequence
          Length = 121777

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 615    tggagaatactagatgagga 634
              ||||||||||||||||||||
Sbjct: 110082 tggagaatactagatgagga 110101
to top
>gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147103

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   gatatgtgttttcattgtat 506
             ||||||||||||||||||||
Sbjct: 33675 gatatgtgttttcattgtat 33656
to top
>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete
             sequence
          Length = 179198

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    ataaaacaacaaatgttgaatgta 82
             |||||||| |||||||||||||||
Sbjct: 22944 ataaaacagcaaatgttgaatgta 22967
to top
>dbj|AK115981.1| Ciona intestinalis cDNA, clone:citb002p15, full insert sequence
          Length = 1495

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 404 cttgcagaagtgacttttca 423
           ||||||||||||||||||||
Sbjct: 64  cttgcagaagtgacttttca 45
to top
>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete
             sequence
          Length = 187043

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   tcatgttttctgaacccaag 136
             ||||||||||||||||||||
Sbjct: 44134 tcatgttttctgaacccaag 44115
to top
>gb|AC087242.10| Homo sapiens 12 BAC RP11-361I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114097

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   atatacaacatggatttcac 478
             ||||||||||||||||||||
Sbjct: 32781 atatacaacatggatttcac 32800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,561,149
Number of Sequences: 3902068
Number of extensions: 6561149
Number of successful extensions: 121770
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121451
Number of HSP's gapped (non-prelim): 319
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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