ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36p17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477483.1| Oryza sativa (japonica cultivar-group), mRNA 220 4e-54
2dbj|AK058321.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 4e-54
3ref|XM_477481.1| Oryza sativa (japonica cultivar-group), mRNA 198 1e-47
4dbj|AK105707.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
6dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
7dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
8ref|XM_469938.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
9ref|XM_469935.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
10ref|XM_469934.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
11gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 58 3e-05
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
14gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 58 3e-05
15dbj|AK121857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
16dbj|AK100342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
17dbj|AK065990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
18dbj|AK059698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
19gb|AY109832.1| Zea mays CL1856_2 mRNA sequence 56 1e-04
20dbj|D88451.1| Zea mays mRNA for aldehyde oxidase, complete cds 56 1e-04
21ref|NM_194783.1| Oryza sativa (japonica cultivar-group) putative... 50 0.008
22gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, c... 50 0.008
23gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, c... 50 0.008
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
25dbj|AK121557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
26dbj|AK103597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
27gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
28dbj|AB238209.1| Brassica rapa BrAO2 mRNA for aldehyde oxidase, p... 48 0.032
29gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 44 0.49
30dbj|D88452.1| Zea mays mRNA for aldehyde oxidase-2, complete cds 44 0.49
31ref|XM_476717.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
32gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, com... 42 1.9
33gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, comp... 42 1.9
34dbj|AK122123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
35ref|NM_185058.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
36gb|AC010577.5| Drosophila melanogaster clone BACR22J20, complete... 40 7.7
37gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complet... 40 7.7
38gb|AC154640.2| Mus musculus BAC clone RP23-268P13 from chromosom... 40 7.7
39emb|AL138789.12| Human DNA sequence from clone RP4-694A7 on chro... 40 7.7
40gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 7.7
41gb|AC161921.5| Mus musculus chromosome 1, clone RP24-402C17, com... 40 7.7
42gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genom... 40 7.7
43ref|NM_079895.2| Drosophila melanogaster Retinoid- and fatty-aci... 40 7.7
44dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.7
45emb|Z95619.1|CEH21P03 Caenorhabditis elegans Fosmid H21P03, comp... 40 7.7
46gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 o... 40 7.7
47gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, com... 40 7.7
48gb|U62892.1|DMU62892 Drosophila melanogaster retinoid- and fatty... 40 7.7 
>ref|XM_477483.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1187

 Score =  220 bits (111), Expect = 4e-54
 Identities = 227/265 (85%), Gaps = 1/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 302 caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
           |||||||  ||||||| ||| |||| |||||||||||||| ||||| || |||||| | |
Sbjct: 718 caaactctatcctcgctgcttggattgcttctctcaccgcacaatgcacagatgctccaa 659

                                                                       
Query: 362 gaaccacggcaggttccccagaggcttttgacgaaagaacacggttcttatggtaccccg 421
           |||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||| || |
Sbjct: 658 gaaccacggcaggttccccagaagcttttgaagaaagcacacggttc-tatggtatccag 600

                                                                       
Query: 422 tgttgagcacctcagcattgaactgcttcgggatggtgtccacgcttgggatcttgtaga 481
           |||||||||||||    ||||| |||||||||||||||||||| ||||||||||||||| 
Sbjct: 599 tgttgagcacctctaagttgaattgcttcgggatggtgtccacacttgggatcttgtagt 540

                                                                       
Query: 482 cccatgtgctgtcactcacaaccagtccatcggnatttgtttcgtgttcttcatttatga 541
           |||| |||||||  || | |||||  |||||    ||||||| |||||||||||  ||||
Sbjct: 539 cccaggtgctgttgctaataaccaagccatcactgtttgtttggtgttcttcatagatga 480

                                    
Query: 542 agaaaccaattncttgtataaagga 566
           ||||||||||| |||||||||||||
Sbjct: 479 agaaaccaattccttgtataaagga 455
to top
>dbj|AK058321.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B01, full
           insert sequence
          Length = 1187

 Score =  220 bits (111), Expect = 4e-54
 Identities = 227/265 (85%), Gaps = 1/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 302 caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
           |||||||  ||||||| ||| |||| |||||||||||||| ||||| || |||||| | |
Sbjct: 718 caaactctatcctcgctgcttggattgcttctctcaccgcacaatgcacagatgctccaa 659

                                                                       
Query: 362 gaaccacggcaggttccccagaggcttttgacgaaagaacacggttcttatggtaccccg 421
           |||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||| || |
Sbjct: 658 gaaccacggcaggttccccagaagcttttgaagaaagcacacggttc-tatggtatccag 600

                                                                       
Query: 422 tgttgagcacctcagcattgaactgcttcgggatggtgtccacgcttgggatcttgtaga 481
           |||||||||||||    ||||| |||||||||||||||||||| ||||||||||||||| 
Sbjct: 599 tgttgagcacctctaagttgaattgcttcgggatggtgtccacacttgggatcttgtagt 540

                                                                       
Query: 482 cccatgtgctgtcactcacaaccagtccatcggnatttgtttcgtgttcttcatttatga 541
           |||| |||||||  || | |||||  |||||    ||||||| |||||||||||  ||||
Sbjct: 539 cccaggtgctgttgctaataaccaagccatcactgtttgtttggtgttcttcatagatga 480

                                    
Query: 542 agaaaccaattncttgtataaagga 566
           ||||||||||| |||||||||||||
Sbjct: 479 agaaaccaattccttgtataaagga 455
to top
>ref|XM_477481.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4029

 Score =  198 bits (100), Expect = 1e-47
 Identities = 221/262 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
            |||||||  |||| || |||||||| |||||||||||||| |||||||| |||||| | |
Sbjct: 3880 caaactctatccttgctgctcggattgcttctctcaccgcacaatggacagatgctccaa 3821

                                                                        
Query: 362  gaaccacggcaggttccccagaggcttttgacgaaagaacacggttcttatggtaccccg 421
            |||||||||||||||| ||||| |||||||| ||||| ||||||| |||||| || || |
Sbjct: 3820 gaaccacggcaggttcaccagaagcttttgaagaaagcacacggtgcttatgatatccag 3761

                                                                        
Query: 422  tgttgagcacctcagcattgaactgcttcgggatggtgtccacgcttgggatcttgtaga 481
            |||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||| 
Sbjct: 3760 tgttcagcacctctgcgttgaattgcttcgggatggtgtcgacgcttggaatcttgtagt 3701

                                                                        
Query: 482  cccatgtgctgtcactcacaaccagtccatcggnatttgtttcgtgttcttcatttatga 541
            |||| |||||||  || | |||||| || ||    || || | |||||||||||  ||||
Sbjct: 3700 cccaggtgctgttgctaataaccagaccgtcactgttcgtctggtgttcttcatagatga 3641

                                  
Query: 542  agaaaccaattncttgtataaa 563
            ||||||||||| ||||||||||
Sbjct: 3640 agaaaccaattccttgtataaa 3619
to top
>dbj|AK105707.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E04, full
            insert sequence
          Length = 1472

 Score =  198 bits (100), Expect = 1e-47
 Identities = 221/262 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302  caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
            |||||||  |||| || |||||||| |||||||||||||| |||||||| |||||| | |
Sbjct: 1002 caaactctatccttgctgctcggattgcttctctcaccgcacaatggacagatgctccaa 943

                                                                        
Query: 362  gaaccacggcaggttccccagaggcttttgacgaaagaacacggttcttatggtaccccg 421
            |||||||||||||||| ||||| |||||||| ||||| ||||||| |||||| || || |
Sbjct: 942  gaaccacggcaggttcaccagaagcttttgaagaaagcacacggtgcttatgatatccag 883

                                                                        
Query: 422  tgttgagcacctcagcattgaactgcttcgggatggtgtccacgcttgggatcttgtaga 481
            |||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||| 
Sbjct: 882  tgttcagcacctctgcgttgaattgcttcgggatggtgtcgacgcttggaatcttgtagt 823

                                                                        
Query: 482  cccatgtgctgtcactcacaaccagtccatcggnatttgtttcgtgttcttcatttatga 541
            |||| |||||||  || | |||||| || ||    || || | |||||||||||  ||||
Sbjct: 822  cccaggtgctgttgctaataaccagaccgtcactgttcgtctggtgttcttcatagatga 763

                                  
Query: 542  agaaaccaattncttgtataaa 563
            ||||||||||| ||||||||||
Sbjct: 762  agaaaccaattccttgtataaa 741
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  141 bits (71), Expect = 3e-30
 Identities = 154/181 (85%), Gaps = 1/181 (0%)
 Strand = Plus / Minus

                                                                            
Query: 386      cttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctcagcattgaact 445
                ||||||| ||||| |||||||||| |||||| || ||||||||||||||    ||||| |
Sbjct: 10798638 cttttgaagaaagcacacggttct-atggtatccagtgttgagcacctctaagttgaatt 10798580

                                                                            
Query: 446      gcttcgggatggtgtccacgcttgggatcttgtagacccatgtgctgtcactcacaacca 505
                ||||||||||||||||||| ||||||||||||||| |||| |||||||  || | |||||
Sbjct: 10798579 gcttcgggatggtgtccacacttgggatcttgtagtcccaggtgctgttgctaataacca 10798520

                                                                            
Query: 506      gtccatcggnatttgtttcgtgttcttcatttatgaagaaaccaattncttgtataaagg 565
                  |||||    ||||||| |||||||||||  ||||||||||||||| ||||||||||||
Sbjct: 10798519 agccatcactgtttgtttggtgttcttcatagatgaagaaaccaattccttgtataaagg 10798460

                 
Query: 566      a 566
                |
Sbjct: 10798459 a 10798459



 Score =  119 bits (60), Expect = 1e-23
 Identities = 148/178 (83%)
 Strand = Plus / Minus

                                                                            
Query: 386      cttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctcagcattgaact 445
                ||||||| ||||| ||||||| |||||| || || ||||| |||||||| || ||||| |
Sbjct: 10769538 cttttgaagaaagcacacggtgcttatgatatccagtgttcagcacctctgcgttgaatt 10769479

                                                                            
Query: 446      gcttcgggatggtgtccacgcttgggatcttgtagacccatgtgctgtcactcacaacca 505
                |||||||||||||||| |||||||| ||||||||| |||| |||||||  || | |||||
Sbjct: 10769478 gcttcgggatggtgtcgacgcttggaatcttgtagtcccaggtgctgttgctaataacca 10769419

                                                                          
Query: 506      gtccatcggnatttgtttcgtgttcttcatttatgaagaaaccaattncttgtataaa 563
                | || ||    || || | |||||||||||  ||||||||||||||| ||||||||||
Sbjct: 10769418 gaccgtcactgttcgtctggtgttcttcatagatgaagaaaccaattccttgtataaa 10769361



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 302      caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
                |||||||  ||||||| ||| |||| |||||||||||||| ||||| || |||||| | |
Sbjct: 10798816 caaactctatcctcgctgcttggattgcttctctcaccgcacaatgcacagatgctccaa 10798757

                                      
Query: 362      gaaccacggcaggttccccaga 383
                ||||||||||||||||||||||
Sbjct: 10798756 gaaccacggcaggttccccaga 10798735



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 302      caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
                |||||||  |||| || |||||||| |||||||||||||| |||||||| |||||| | |
Sbjct: 10769706 caaactctatccttgctgctcggattgcttctctcaccgcacaatggacagatgctccaa 10769647

                                      
Query: 362      gaaccacggcaggttccccaga 383
                |||||||||||||||| |||||
Sbjct: 10769646 gaaccacggcaggttcaccaga 10769625
to top
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0557D09
          Length = 135315

 Score =  141 bits (71), Expect = 3e-30
 Identities = 154/181 (85%), Gaps = 1/181 (0%)
 Strand = Plus / Minus

                                                                          
Query: 386    cttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctcagcattgaact 445
              ||||||| ||||| |||||||||| |||||| || ||||||||||||||    ||||| |
Sbjct: 128084 cttttgaagaaagcacacggttct-atggtatccagtgttgagcacctctaagttgaatt 128026

                                                                          
Query: 446    gcttcgggatggtgtccacgcttgggatcttgtagacccatgtgctgtcactcacaacca 505
              ||||||||||||||||||| ||||||||||||||| |||| |||||||  || | |||||
Sbjct: 128025 gcttcgggatggtgtccacacttgggatcttgtagtcccaggtgctgttgctaataacca 127966

                                                                          
Query: 506    gtccatcggnatttgtttcgtgttcttcatttatgaagaaaccaattncttgtataaagg 565
                |||||    ||||||| |||||||||||  ||||||||||||||| ||||||||||||
Sbjct: 127965 agccatcactgtttgtttggtgttcttcatagatgaagaaaccaattccttgtataaagg 127906

               
Query: 566    a 566
              |
Sbjct: 127905 a 127905



 Score =  119 bits (60), Expect = 1e-23
 Identities = 148/178 (83%)
 Strand = Plus / Minus

                                                                         
Query: 386   cttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctcagcattgaact 445
             ||||||| ||||| ||||||| |||||| || || ||||| |||||||| || ||||| |
Sbjct: 98984 cttttgaagaaagcacacggtgcttatgatatccagtgttcagcacctctgcgttgaatt 98925

                                                                         
Query: 446   gcttcgggatggtgtccacgcttgggatcttgtagacccatgtgctgtcactcacaacca 505
             |||||||||||||||| |||||||| ||||||||| |||| |||||||  || | |||||
Sbjct: 98924 gcttcgggatggtgtcgacgcttggaatcttgtagtcccaggtgctgttgctaataacca 98865

                                                                       
Query: 506   gtccatcggnatttgtttcgtgttcttcatttatgaagaaaccaattncttgtataaa 563
             | || ||    || || | |||||||||||  ||||||||||||||| ||||||||||
Sbjct: 98864 gaccgtcactgttcgtctggtgttcttcatagatgaagaaaccaattccttgtataaa 98807



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 302    caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
              |||||||  ||||||| ||| |||| |||||||||||||| ||||| || |||||| | |
Sbjct: 128262 caaactctatcctcgctgcttggattgcttctctcaccgcacaatgcacagatgctccaa 128203

                                    
Query: 362    gaaccacggcaggttccccaga 383
              ||||||||||||||||||||||
Sbjct: 128202 gaaccacggcaggttccccaga 128181



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 302   caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
             |||||||  |||| || |||||||| |||||||||||||| |||||||| |||||| | |
Sbjct: 99152 caaactctatccttgctgctcggattgcttctctcaccgcacaatggacagatgctccaa 99093

                                   
Query: 362   gaaccacggcaggttccccaga 383
             |||||||||||||||| |||||
Sbjct: 99092 gaaccacggcaggttcaccaga 99071
to top
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0018O23
          Length = 142143

 Score =  141 bits (71), Expect = 3e-30
 Identities = 154/181 (85%), Gaps = 1/181 (0%)
 Strand = Plus / Minus

                                                                        
Query: 386  cttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctcagcattgaact 445
            ||||||| ||||| |||||||||| |||||| || ||||||||||||||    ||||| |
Sbjct: 9397 cttttgaagaaagcacacggttct-atggtatccagtgttgagcacctctaagttgaatt 9339

                                                                        
Query: 446  gcttcgggatggtgtccacgcttgggatcttgtagacccatgtgctgtcactcacaacca 505
            ||||||||||||||||||| ||||||||||||||| |||| |||||||  || | |||||
Sbjct: 9338 gcttcgggatggtgtccacacttgggatcttgtagtcccaggtgctgttgctaataacca 9279

                                                                        
Query: 506  gtccatcggnatttgtttcgtgttcttcatttatgaagaaaccaattncttgtataaagg 565
              |||||    ||||||| |||||||||||  ||||||||||||||| ||||||||||||
Sbjct: 9278 agccatcactgtttgtttggtgttcttcatagatgaagaaaccaattccttgtataaagg 9219

             
Query: 566  a 566
            |
Sbjct: 9218 a 9218



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                        
Query: 302  caaactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcga 361
            |||||||  ||||||| ||| |||| |||||||||||||| ||||| || |||||| | |
Sbjct: 9575 caaactctatcctcgctgcttggattgcttctctcaccgcacaatgcacagatgctccaa 9516

                                  
Query: 362  gaaccacggcaggttccccaga 383
            ||||||||||||||||||||||
Sbjct: 9515 gaaccacggcaggttccccaga 9494
to top
>ref|XM_469938.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 480

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 439 ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
           ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 157 ttgaactgcttggggatggtgtccacggtggggatcttgta 117
to top
>ref|XM_469935.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4068

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 3806 ttgaactgcttggggatggtgtccacggtggggatcttgta 3766
to top
>ref|XM_469934.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4071

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 3809 ttgaactgcttggggatggtgtccacggtggggatcttgta 3769
to top
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
              sequence
          Length = 162497

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 439    ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
              ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 149574 ttgaactgcttggggatggtgtccacggtggggatcttgta 149534
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 439      ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
                ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 32594333 ttgaactgcttggggatggtgtccacggtggggatcttgta 32594373



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 439      ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
                ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 32575986 ttgaactgcttggggatggtgtccacggtggggatcttgta 32576026



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 439      ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
                ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 32565904 ttgaactgcttggggatggtgtccacggtggggatcttgta 32565944



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 439      ttgaactgcttcgggatggtgtccacgc 466
                |||||||||||  |||||||||||||||
Sbjct: 32952531 ttgaactgcttgaggatggtgtccacgc 32952558
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 439      ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
                ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 32684843 ttgaactgcttggggatggtgtccacggtggggatcttgta 32684883



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 439      ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
                ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 32666496 ttgaactgcttggggatggtgtccacggtggggatcttgta 32666536



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 439      ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
                ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 32656414 ttgaactgcttggggatggtgtccacggtggggatcttgta 32656454



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 439      ttgaactgcttcgggatggtgtccacgc 466
                |||||||||||  |||||||||||||||
Sbjct: 33043041 ttgaactgcttgaggatggtgtccacgc 33043068
to top
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
              sequence
          Length = 119134

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 439    ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
              ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 109435 ttgaactgcttggggatggtgtccacggtggggatcttgta 109475



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 439   ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
             ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 99353 ttgaactgcttggggatggtgtccacggtggggatcttgta 99393
to top
>dbj|AK121857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102I02, full
            insert sequence
          Length = 3508

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 3104 ttgaactgcttggggatggtgtccacggtggggatcttgta 3064
to top
>dbj|AK100342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082B09, full
            insert sequence
          Length = 4432

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 3999 ttgaactgcttggggatggtgtccacggtggggatcttgta 3959
to top
>dbj|AK065990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D18, full
            insert sequence
          Length = 3113

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 2709 ttgaactgcttggggatggtgtccacggtggggatcttgta 2669
to top
>dbj|AK059698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C05, full
           insert sequence
          Length = 1134

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 439 ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
           ||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 741 ttgaactgcttggggatggtgtccacggtggggatcttgta 701
to top
>gb|AY109832.1| Zea mays CL1856_2 mRNA sequence
          Length = 4402

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  aactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcgaga 363
            ||||||||||||||||| | |||||| || |||| |||||| || ||||| | |||||||
Sbjct: 3962 aactccttcctcgccgccctgatggcctccctcatcgcgcagtgcaccgaggttgcgaga 3903

                
Query: 364  acca 367
            ||||
Sbjct: 3902 acca 3899
to top
>dbj|D88451.1| Zea mays mRNA for aldehyde oxidase, complete cds
          Length = 4382

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  aactccttcctcgccgctcggatggcttctctcaccgcgcaatggaccgatgctgcgaga 363
            ||||||||||||||||| | |||||| || |||| |||||| || ||||| | |||||||
Sbjct: 3962 aactccttcctcgccgccctgatggcctccctcatcgcgcagtgcaccgaggttgcgaga 3903

                
Query: 364  acca 367
            ||||
Sbjct: 3902 acca 3899
to top
>ref|NM_194783.1| Oryza sativa (japonica cultivar-group) putative aldehyde oxidase
            (OSJNAa0087H07.7), mRNA
          Length = 4077

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 3794 ttgaactgcttggggatggtgtctacggtggggatcttgta 3754
to top
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 2821 ttgaactgcttggggatggtgtctacggtggggatcttgta 2781
to top
>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence
          Length = 132268

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 439   ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
             ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 75089 ttgaactgcttggggatggtgtctacggtggggatcttgta 75049
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 439     ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
               ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 2346089 ttgaactgcttggggatggtgtctacggtggggatcttgta 2346049
to top
>dbj|AK121557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033J23, full
            insert sequence
          Length = 5069

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 3883 ttgaactgcttggggatggtgtctacggtggggatcttgta 3843
to top
>dbj|AK103597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133E15, full
            insert sequence
          Length = 2514

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 439  ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 1327 ttgaactgcttggggatggtgtctacggtggggatcttgta 1287
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                        
Query: 439     ttgaactgcttcgggatggtgtccacgcttgggatcttgta 479
               ||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 2346040 ttgaactgcttggggatggtgtctacggtggggatcttgta 2346000
to top
>dbj|AB238209.1| Brassica rapa BrAO2 mRNA for aldehyde oxidase, partial cds
          Length = 4201

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 373  ggttccccagaggcttttgacgaaagaacacggttcttatggtaccccgtgttgag 428
            ||||| ||||| ||||| || ||||||||||||||||| ||||  || ||||||||
Sbjct: 3834 ggttcaccagaagctttggatgaaagaacacggttcttgtggtgtccagtgttgag 3779
to top
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 422   tgttgagcacctcagcattgaactgcttcgggatggtgtccacgcttgggatcttgta 479
             |||||| || |||| | ||||||||||| ||||||||||| ||  | |||||||||||
Sbjct: 22104 tgttgatcagctcaacgttgaactgctttgggatggtgtcgaccgtggggatcttgta 22161
to top
>dbj|D88452.1| Zea mays mRNA for aldehyde oxidase-2, complete cds
          Length = 4333

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 422  tgttgagcacctcagcattgaactgcttcgggatggtgtccacgcttgggatcttgta 479
            |||||| || |||| | ||||||||||| ||||||||||| ||  | |||||||||||
Sbjct: 3865 tgttgatcagctcaacgttgaactgctttgggatggtgtcgaccgtggggatcttgta 3808
to top
>ref|XM_476717.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4245

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 72/89 (80%)
 Strand = Plus / Minus

                                                                        
Query: 376  tccccagaggcttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctca 435
            |||||||| |||||||| || || ||||| ||||| ||| | ||  ||||||| | || |
Sbjct: 4043 tccccagaagcttttgaagagagcacacgtttcttgtggaatccactgttgagtagctta 3984

                                         
Query: 436  gcattgaactgcttcgggatggtgtccac 464
             | |||||||| || ||||||||||||||
Sbjct: 3983 acgttgaactgttttgggatggtgtccac 3955
to top
>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 532    tcatttatgaagaaaccaatt 552
              |||||||||||||||||||||
Sbjct: 182463 tcatttatgaagaaaccaatt 182483
to top
>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 532   tcatttatgaagaaaccaatt 552
             |||||||||||||||||||||
Sbjct: 88034 tcatttatgaagaaaccaatt 88014
to top
>dbj|AK122123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131J21, full
            insert sequence
          Length = 2663

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 72/89 (80%)
 Strand = Plus / Minus

                                                                        
Query: 376  tccccagaggcttttgacgaaagaacacggttcttatggtaccccgtgttgagcacctca 435
            |||||||| |||||||| || || ||||| ||||| ||| | ||  ||||||| | || |
Sbjct: 2183 tccccagaagcttttgaagagagcacacgtttcttgtggaatccactgttgagtagctta 2124

                                         
Query: 436  gcattgaactgcttcgggatggtgtccac 464
             | |||||||| || ||||||||||||||
Sbjct: 2123 acgttgaactgttttgggatggtgtccac 2095
to top
>ref|NM_185058.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 249

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 439 ttgaactgcttcgggatggtgtccacgc 466
           |||||||||||  |||||||||||||||
Sbjct: 56  ttgaactgcttgaggatggtgtccacgc 29
to top
>gb|AC010577.5| Drosophila melanogaster clone BACR22J20, complete sequence
          Length = 152661

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 526    tgttcttcatttatgaagaaacca 549
              ||||| ||||||||||||||||||
Sbjct: 118565 tgttcatcatttatgaagaaacca 118588
to top
>gb|AC010838.12| Drosophila melanogaster clone BACR13D24, complete sequence
          Length = 156843

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 526    tgttcttcatttatgaagaaacca 549
              ||||| ||||||||||||||||||
Sbjct: 139041 tgttcatcatttatgaagaaacca 139018
to top
>gb|AC154640.2| Mus musculus BAC clone RP23-268P13 from chromosome 14, complete
             sequence
          Length = 212817

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aaagttacaaacatttagaa 77
             ||||||||||||||||||||
Sbjct: 78618 aaagttacaaacatttagaa 78599
to top
>emb|AL138789.12| Human DNA sequence from clone RP4-694A7 on chromosome 1p31.2-32.1
             Contains the 3' end of the gene for cell cycle control
             protein SDP35 (SDP35), two novel genes and a thioredoxin
             (TXN) pseudogene, complete sequence
          Length = 96157

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   cccatgtgctgtcactcaca 501
             ||||||||||||||||||||
Sbjct: 44808 cccatgtgctgtcactcaca 44827
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 174    cgccgcagatcgagaccgatgcgc 197
              ||||||||||||||| ||||||||
Sbjct: 165923 cgccgcagatcgagatcgatgcgc 165946
to top
>gb|AC161921.5| Mus musculus chromosome 1, clone RP24-402C17, complete sequence
          Length = 170279

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     gtcactcaaagttacaaaca 70
              ||||||||||||||||||||
Sbjct: 160209 gtcactcaaagttacaaaca 160190
to top
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
             sequence
          Length = 151479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 439   ttgaactgcttcgggatggtgtccacgc 466
             |||||||||||  |||||||||||||||
Sbjct: 37644 ttgaactgcttgaggatggtgtccacgc 37617
to top
>ref|NM_079895.2| Drosophila melanogaster Retinoid- and fatty-acid binding protein
            CG11064-RA (RfaBp), mRNA
          Length = 10281

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 526  tgttcttcatttatgaagaaacca 549
            ||||| ||||||||||||||||||
Sbjct: 3704 tgttcatcatttatgaagaaacca 3681
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 268     gggacgtcgagctggaacgt 287
               ||||||||||||||||||||
Sbjct: 4322131 gggacgtcgagctggaacgt 4322112
to top
>emb|Z95619.1|CEH21P03 Caenorhabditis elegans Fosmid H21P03, complete sequence
          Length = 25593

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tcgagaccgatgcgcagata 202
             ||||||||||||||||||||
Sbjct: 18913 tcgagaccgatgcgcagata 18932
to top
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete
              sequence
          Length = 356494

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 526    tgttcttcatttatgaagaaacca 549
              ||||| ||||||||||||||||||
Sbjct: 164506 tgttcatcatttatgaagaaacca 164483
to top
>gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, complete sequence
          Length = 173113

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    gtcactcaaagttacaaaca 70
             ||||||||||||||||||||
Sbjct: 42328 gtcactcaaagttacaaaca 42309
to top
>gb|U62892.1|DMU62892 Drosophila melanogaster retinoid- and fatty acid-binding glycoprotein
            mRNA, complete cds
          Length = 10281

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 526  tgttcttcatttatgaagaaacca 549
            ||||| ||||||||||||||||||
Sbjct: 3704 tgttcatcatttatgaagaaacca 3681


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,765,848
Number of Sequences: 3902068
Number of extensions: 3765848
Number of successful extensions: 62768
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62499
Number of HSP's gapped (non-prelim): 264
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top