| Clone Name | rbags37e23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472198.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 646 bits (326), Expect = 0.0 Identities = 508/569 (89%) Strand = Plus / Minus Query: 133 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 192 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||| Sbjct: 1037 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 978 Query: 193 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 252 |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 977 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 918 Query: 253 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 312 |||| ||||||||| || || |||||||| |||||||||||||| |||||||| |||||| Sbjct: 917 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 858 Query: 313 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 372 || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 857 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 798 Query: 373 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 432 || ||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 797 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 738 Query: 433 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaatttaaga 492 ||||| ||||||| |||||| | |||||||||||| || || ||||| ||||||||||| Sbjct: 737 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaatttaagg 678 Query: 493 cggtcaaagtcacactgtgaaacaggtgactcaggttccagctccttcatgaaggcactg 552 |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 677 cggtcaaaatcacactgtgaaacaggtgattcaggttccagctccgtcatgaaggcactg 618 Query: 553 acaagcgccgagttggacactttaatcggtatctcctcgaaaatatcaacccatgacaat 612 ||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 617 acaagtgcagagttggaaactttaatcggtatctcctcaaaaatatcaacccatgacaat 558 Query: 613 ttcttttcccttagcttctctccagttaaaccattgttgcggtacagatccataaaagag 672 ||||| || |||| |||||||||||||||||||||||| ||||| |||||||| || || Sbjct: 557 ttcttctctcttaacttctctccagttaaaccattgttacggtaaagatccatgaatgaa 498 Query: 673 tctgtgagcttcanggctttaagagctag 701 |||||||| |||| ||| || |||||||| Sbjct: 497 tctgtgagtttcaaggccttgagagctag 469
>dbj|AK103713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137H02, full insert sequence Length = 1289 Score = 646 bits (326), Expect = 0.0 Identities = 508/569 (89%) Strand = Plus / Minus Query: 133 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 192 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||| Sbjct: 1121 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 1062 Query: 193 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 252 |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 1061 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 1002 Query: 253 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 312 |||| ||||||||| || || |||||||| |||||||||||||| |||||||| |||||| Sbjct: 1001 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 942 Query: 313 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 372 || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 941 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 882 Query: 373 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 432 || ||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 881 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 822 Query: 433 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaatttaaga 492 ||||| ||||||| |||||| | |||||||||||| || || ||||| ||||||||||| Sbjct: 821 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaatttaagg 762 Query: 493 cggtcaaagtcacactgtgaaacaggtgactcaggttccagctccttcatgaaggcactg 552 |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 761 cggtcaaaatcacactgtgaaacaggtgattcaggttccagctccgtcatgaaggcactg 702 Query: 553 acaagcgccgagttggacactttaatcggtatctcctcgaaaatatcaacccatgacaat 612 ||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 701 acaagtgcagagttggaaactttaatcggtatctcctcaaaaatatcaacccatgacaat 642 Query: 613 ttcttttcccttagcttctctccagttaaaccattgttgcggtacagatccataaaagag 672 ||||| || |||| |||||||||||||||||||||||| ||||| |||||||| || || Sbjct: 641 ttcttctctcttaacttctctccagttaaaccattgttacggtaaagatccatgaatgaa 582 Query: 673 tctgtgagcttcanggctttaagagctag 701 |||||||| |||| ||| || |||||||| Sbjct: 581 tctgtgagtttcaaggccttgagagctag 553
>dbj|AK061349.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F07, full insert sequence Length = 1158 Score = 646 bits (326), Expect = 0.0 Identities = 508/569 (89%) Strand = Plus / Minus Query: 133 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccccattgata 192 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||||||| ||| Sbjct: 988 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccccattaata 929 Query: 193 tggttgcagtaactcgagatctgattggttacgagataaccctccaagcgggatggctca 252 |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| Sbjct: 928 tggttgcagtaactggagatctgattggttacaagataaccctccaaacgtgacggctca 869 Query: 253 ggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctcgccagca 312 |||| ||||||||| || || |||||||| |||||||||||||| |||||||| |||||| Sbjct: 868 ggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctcctctccagca 809 Query: 313 gcctttctcgacatgttctcttgccttctcttttgaagccatgcctgttgctgtgactgt 372 || ||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 808 gcttttcttgccatattctcttgccttctcttttggagccatgcctgctgctgtgactgc 749 Query: 373 tgccttcctaggttgcgatagtaatattggaacttgttttgctctgatgaaagaccatcc 432 || ||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 748 tgtcttgagacattgcgatagtaatattggaacttgttctgctctgatgaaagatcatcc 689 Query: 433 atgcacccaatcataaattctaggttcctttccataaagggtgcagtcgacaatttaaga 492 ||||| ||||||| |||||| | |||||||||||| || || ||||| ||||||||||| Sbjct: 688 atgcagccaatcagaaattccaagttcctttccatgaatggagcagttgacaatttaagg 629 Query: 493 cggtcaaagtcacactgtgaaacaggtgactcaggttccagctccttcatgaaggcactg 552 |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 628 cggtcaaaatcacactgtgaaacaggtgattcaggttccagctccgtcatgaaggcactg 569 Query: 553 acaagcgccgagttggacactttaatcggtatctcctcgaaaatatcaacccatgacaat 612 ||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 568 acaagtgcagagttggaaactttaatcggtatctcctcaaaaatatcaacccatgacaat 509 Query: 613 ttcttttcccttagcttctctccagttaaaccattgttgcggtacagatccataaaagag 672 ||||| || |||| |||||||||||||||||||||||| ||||| |||||||| || || Sbjct: 508 ttcttctctcttaacttctctccagttaaaccattgttacggtaaagatccatgaatgaa 449 Query: 673 tctgtgagcttcanggctttaagagctag 701 |||||||| |||| ||| || |||||||| Sbjct: 448 tctgtgagtttcaaggccttgagagctag 420
>gb|AY109988.1| Zea mays CL3444_1 mRNA sequence Length = 1334 Score = 325 bits (164), Expect = 1e-85 Identities = 315/369 (85%) Strand = Plus / Plus Query: 347 gaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagtaatattggaact 406 ||||||||||||| |||||||||||||| ||| || ||||| | ||||||||||||| Sbjct: 430 gaagccatgcctgctgctgtgactgttgtcttgagagattgcggttataatattggaact 489 Query: 407 tgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttcca 466 |||| ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| Sbjct: 490 tgttctgctctgatgaaagatcatccatgcacccaatcagaaattccaagttcctttcca 549 Query: 467 taaagggtgcagtcgacaatttaagacggtcaaagtcacactgtgaaacaggtgactcag 526 |||| |||| ||||||||||| ||||| | ||||||||| | ||||||||| |||| Sbjct: 550 taaannnnncagttgacaatttaagtcggtccaggtcacactgggtaacaggtgattcag 609 Query: 527 gttccagctccttcatgaaggcactgacaagcgccgagttggacactttaatcggtatct 586 |||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct: 610 gttccagctccttcatgaaggcactgacaagcgctgagttggaaacttttattggtatct 669 Query: 587 cctcgaaaatatcaacccatgacaatttcttttcccttagcttctctccagttaaaccat 646 |||| |||||||||| ||||||||||| || |||| | | | |||||||||| Sbjct: 670 cctcnnnnntatcaacccaggacaatttcttctctcttaacctgcagcaggttaaaccat 729 Query: 647 tgttgcggtacagatccataaaagagtctgtgagcttcanggctttaagagctagcactc 706 |||| ||||| ||||||||||| |||||||| ||||| | |||||| ||||||||||| | Sbjct: 730 tgttacggtaaagatccataaacgagtctgtaagctttaaggctttgagagctagcacgc 789 Query: 707 cttgactag 715 ||||||||| Sbjct: 790 cttgactag 798 Score = 170 bits (86), Expect = 4e-39 Identities = 161/186 (86%) Strand = Plus / Plus Query: 126 ctaatcttcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaacccc 185 |||||| || ||||| |||||||||| ||||||||||| |||| |||| ||||||||||| Sbjct: 209 ctaatcctcatgcaaggccttcatcaggtatagcctgtcgaaattctgaccagcaacccc 268 Query: 186 attgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcggga 245 |||||||||||||||||||| |||||||||| ||||| ||||| |||||||| || || Sbjct: 269 gttgatatggttgcagtaactgcagatctgattagttactagatagccctccaatcgtga 328 Query: 246 tggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctcctc 305 |||||||||| ||||| || ||||| |||||||||||||||||||| | |||||||| Sbjct: 329 gggctcaggaataggcttaaatataggattggatggatcttcttctggtagtggctcctc 388 Query: 306 gccagc 311 ||||| Sbjct: 389 accagc 394
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 174 bits (88), Expect = 3e-40 Identities = 139/156 (89%) Strand = Plus / Plus Query: 183 cccattgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcg 242 |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct: 18412019 cccattaatatggttgcagtaactggagatctgattggttacaagataaccctccaaacg 18412078 Query: 243 ggatggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctc 302 || |||||||||| ||||||||| || || |||||||| |||||||||||||| ||||| Sbjct: 18412079 tgacggctcaggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctc 18412138 Query: 303 ctcgccagcagcctttctcgacatgttctcttgcct 338 ||| |||||||| ||||| | ||| ||||||||||| Sbjct: 18412139 ctctccagcagcttttcttgccatattctcttgcct 18412174 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Plus Query: 405 cttgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttc 464 |||||| ||||||||||||||| |||||||||| ||||||| |||||| | ||||||||| Sbjct: 18412499 cttgttctgctctgatgaaagatcatccatgcagccaatcagaaattccaagttcctttc 18412558 Query: 465 cataaagggtgcagtcgacaatttaagacggtcaaagtcacactgt 510 ||| || || ||||| ||||||||||| |||||||| ||||||||| Sbjct: 18412559 catgaatggagcagttgacaatttaaggcggtcaaaatcacactgt 18412604 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 507 ctgtgaaacaggtgactcaggttccagctccttcatgaaggcactgacaagcgccgagtt 566 ||||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 18412695 ctgtgaaacaggtgattcaggttccagctccgtcatgaaggcactgacaagtgcagagtt 18412754 Query: 567 ggacactttaatc 579 ||| ||||||||| Sbjct: 18412755 ggaaactttaatc 18412767 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 627 cttctctccagttaaaccattgttgcggtacagatccataaaagagtctgtgagcttcan 686 |||||||||||||||||||||||| ||||| |||||||| || || |||||||| |||| Sbjct: 18412970 cttctctccagttaaaccattgttacggtaaagatccatgaatgaatctgtgagtttcaa 18413029 Query: 687 ggctttaagagctag 701 ||| || |||||||| Sbjct: 18413030 ggccttgagagctag 18413044 Score = 69.9 bits (35), Expect = 1e-08 Identities = 38/39 (97%) Strand = Plus / Plus Query: 579 cggtatctcctcgaaaatatcaacccatgacaatttctt 617 |||||||||||| |||||||||||||||||||||||||| Sbjct: 18412843 cggtatctcctcaaaaatatcaacccatgacaatttctt 18412881 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 336 ccttctcttttgaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagta 395 |||||||||||| ||||||||||| ||||||||||| || ||| | ||||||||||| Sbjct: 18412339 ccttctcttttggagccatgcctgctgctgtgactgctgtcttgagacattgcgatagta 18412398 Query: 396 atattggaact 406 ||||||||||| Sbjct: 18412399 atattggaact 18412409 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 133 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccc 184 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 18411595 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccc 18411646
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 174 bits (88), Expect = 3e-40 Identities = 139/156 (89%) Strand = Plus / Plus Query: 183 cccattgatatggttgcagtaactcgagatctgattggttacgagataaccctccaagcg 242 |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || Sbjct: 113942 cccattaatatggttgcagtaactggagatctgattggttacaagataaccctccaaacg 114001 Query: 243 ggatggctcaggaagcggcttgaagatagggttggatggatcttcttctggcaacggctc 302 || |||||||||| ||||||||| || || |||||||| |||||||||||||| ||||| Sbjct: 114002 tgacggctcaggaatcggcttgaaaatgggattggatgggtcttcttctggcaatggctc 114061 Query: 303 ctcgccagcagcctttctcgacatgttctcttgcct 338 ||| |||||||| ||||| | ||| ||||||||||| Sbjct: 114062 ctctccagcagcttttcttgccatattctcttgcct 114097 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Plus Query: 405 cttgttttgctctgatgaaagaccatccatgcacccaatcataaattctaggttcctttc 464 |||||| ||||||||||||||| |||||||||| ||||||| |||||| | ||||||||| Sbjct: 114422 cttgttctgctctgatgaaagatcatccatgcagccaatcagaaattccaagttcctttc 114481 Query: 465 cataaagggtgcagtcgacaatttaagacggtcaaagtcacactgt 510 ||| || || ||||| ||||||||||| |||||||| ||||||||| Sbjct: 114482 catgaatggagcagttgacaatttaaggcggtcaaaatcacactgt 114527 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 507 ctgtgaaacaggtgactcaggttccagctccttcatgaaggcactgacaagcgccgagtt 566 ||||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 114618 ctgtgaaacaggtgattcaggttccagctccgtcatgaaggcactgacaagtgcagagtt 114677 Query: 567 ggacactttaatc 579 ||| ||||||||| Sbjct: 114678 ggaaactttaatc 114690 Score = 79.8 bits (40), Expect = 1e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 627 cttctctccagttaaaccattgttgcggtacagatccataaaagagtctgtgagcttcan 686 |||||||||||||||||||||||| ||||| |||||||| || || |||||||| |||| Sbjct: 114893 cttctctccagttaaaccattgttacggtaaagatccatgaatgaatctgtgagtttcaa 114952 Query: 687 ggctttaagagctag 701 ||| || |||||||| Sbjct: 114953 ggccttgagagctag 114967 Score = 69.9 bits (35), Expect = 1e-08 Identities = 38/39 (97%) Strand = Plus / Plus Query: 579 cggtatctcctcgaaaatatcaacccatgacaatttctt 617 |||||||||||| |||||||||||||||||||||||||| Sbjct: 114766 cggtatctcctcaaaaatatcaacccatgacaatttctt 114804 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 336 ccttctcttttgaagccatgcctgttgctgtgactgttgccttcctaggttgcgatagta 395 |||||||||||| ||||||||||| ||||||||||| || ||| | ||||||||||| Sbjct: 114262 ccttctcttttggagccatgcctgctgctgtgactgctgtcttgagacattgcgatagta 114321 Query: 396 atattggaact 406 ||||||||||| Sbjct: 114322 atattggaact 114332 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 133 tcctgcaacgccttcatcaagtatagcctgttgaaactctggccagcaaccc 184 |||||||| |||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 113518 tcctgcaaggccttcattaagtagagcctgttgaaattctgaccagcaaccc 113569
>dbj|AP006685.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45M12, TM0378b, complete sequence Length = 86433 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 234 ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 293 |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || || Sbjct: 76290 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 76349 Query: 294 caacggctcctcgccagcagc 314 ||| |||||||| |||||||| Sbjct: 76350 caaaggctcctccccagcagc 76370
>dbj|AP004526.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05E07, TM0055, complete sequence Length = 94516 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 234 ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 293 |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || || Sbjct: 50885 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 50944 Query: 294 caacggctcctcgccagcagc 314 ||| |||||||| |||||||| Sbjct: 50945 caaaggctcctccccagcagc 50965
>dbj|AP004471.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT15H09, TM0005, complete sequence Length = 97710 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 234 ctccaagcgggatggctcaggaagcggcttgaagatagggttggatggatcttcttctgg 293 |||||| || ||||||||||| || |||||||| || ||||| || |||||||| || || Sbjct: 80049 ctccaaccgtgatggctcaggtagtggcttgaaaatggggtttgaaggatcttcctcagg 80108 Query: 294 caacggctcctcgccagcagc 314 ||| |||||||| |||||||| Sbjct: 80109 caaaggctcctccccagcagc 80129
>gb|BT013781.1| Lycopersicon esculentum clone 132671F, mRNA sequence Length = 1237 Score = 58.0 bits (29), Expect = 4e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 514 acaggtgactcaggttccagctccttcatgaaggcactgacaagcgccgagttggacact 573 ||||||| |||||||| || || |||| |||||||| | || |||||||| || ||| Sbjct: 690 acaggtgtatcaggttcaagttcagtcataaaggcacttatgagagccgagtttgaaact 631 Query: 574 ttaatcggtatctcctcgaaaatatcaacccatgacaatttcttttcccttagcttctct 633 |||| |||||||| ||||| || || |||||||| | ||||||||||| | ||||||| Sbjct: 630 ttaaatggtatctcttcgaagatgtcgacccatgaaagattcttttccctcaacttctct 571 Query: 634 ccagt 638 ||||| Sbjct: 570 ccagt 566
>ref|NM_213167.1| Danio rerio zgc:85787 (zgc:85787), mRNA Length = 3524 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 185 cattgatatggttgcagtaactc 207 ||||||||||||||||||||||| Sbjct: 999 cattgatatggttgcagtaactc 977
>gb|BC068386.1| Danio rerio zgc:85787, mRNA (cDNA clone MGC:85787 IMAGE:6961124), complete cds Length = 3524 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 185 cattgatatggttgcagtaactc 207 ||||||||||||||||||||||| Sbjct: 999 cattgatatggttgcagtaactc 977
>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete sequence Length = 189900 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 82 atacagtgttaagttaaaatctc 104 ||||||||||||||||||||||| Sbjct: 122516 atacagtgttaagttaaaatctc 122538
>gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, complete sequence Length = 187701 Score = 44.1 bits (22), Expect = 0.63 Identities = 31/34 (91%) Strand = Plus / Plus Query: 329 tctcttgccttctcttttgaagccatgcctgttg 362 |||||||| |||||||||||||||| ||||||| Sbjct: 138178 tctcttgcattctcttttgaagccagtcctgttg 138211
>gb|AC127682.4| Mus musculus BAC clone RP24-170O17 from 8, complete sequence Length = 144298 Score = 44.1 bits (22), Expect = 0.63 Identities = 31/34 (91%) Strand = Plus / Minus Query: 329 tctcttgccttctcttttgaagccatgcctgttg 362 |||||||| |||||||||||||||| ||||||| Sbjct: 15319 tctcttgcattctcttttgaagccagtcctgttg 15286
>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence Length = 208855 Score = 44.1 bits (22), Expect = 0.63 Identities = 31/34 (91%) Strand = Plus / Plus Query: 329 tctcttgccttctcttttgaagccatgcctgttg 362 |||||||| |||||||||||||||| ||||||| Sbjct: 78051 tctcttgcattctcttttgaagccagtcctgttg 78084
>gb|AY704216.1| Mus musculus reelin (Reln) mRNA, partial cds Length = 2241 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ttgcagtaactcgagatctga 216 ||||||||||||||||||||| Sbjct: 1271 ttgcagtaactcgagatctga 1291
>ref|XM_359934.1| Magnaporthe grisea 70-15 hypothetical protein (MG04843.4) partial mRNA Length = 2178 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 ttctggcaacggctcctcgcc 308 ||||||||||||||||||||| Sbjct: 285 ttctggcaacggctcctcgcc 265
>gb|AC108806.10| Mus musculus chromosome 14, clone RP23-246G7, complete sequence Length = 189619 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 617 tttcccttagcttctctccag 637 ||||||||||||||||||||| Sbjct: 127853 tttcccttagcttctctccag 127833
>ref|NM_011261.1| Mus musculus reelin (Reln), mRNA Length = 11673 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ttgcagtaactcgagatctga 216 ||||||||||||||||||||| Sbjct: 4145 ttgcagtaactcgagatctga 4165
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence Length = 275646 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 ttgcagtaactcgagatctga 216 ||||||||||||||||||||| Sbjct: 211802 ttgcagtaactcgagatctga 211782
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence Length = 257203 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 ttgcagtaactcgagatctga 216 ||||||||||||||||||||| Sbjct: 53383 ttgcagtaactcgagatctga 53363
>emb|CT025686.7| Mouse DNA sequence from clone RP24-273I13 on chromosome 14, complete sequence Length = 186233 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 617 tttcccttagcttctctccag 637 ||||||||||||||||||||| Sbjct: 39214 tttcccttagcttctctccag 39234
>gb|AC006629.1| Caenorhabditis elegans cosmid F12E12, complete sequence Length = 27659 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 aatattggaacttgttttgct 415 ||||||||||||||||||||| Sbjct: 24205 aatattggaacttgttttgct 24225
>gb|U24703.1|MMU24703 Mus musculus reelin mRNA, complete cds Length = 11673 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 ttgcagtaactcgagatctga 216 ||||||||||||||||||||| Sbjct: 4145 ttgcagtaactcgagatctga 4165
>ref|XM_477946.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1421 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 802 tctcttgccttctcttttgcagcc 779
>ref|XM_506311.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0027N13.110 mRNA Length = 2157 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 798 tctcttgccttctcttttgcagcc 775
>gb|AC161425.3| Mus musculus BAC clone RP23-265K1 from chromosome 3, complete sequence Length = 214631 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atacagtgttaagttaaaat 101 |||||||||||||||||||| Sbjct: 156464 atacagtgttaagttaaaat 156483
>gb|AC121795.3| Mus musculus BAC clone RP23-421P13 from chromosome 17, complete sequence Length = 204354 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 cctttctcgacatgttctcttgcc 337 |||||||| ||||||||||||||| Sbjct: 78184 cctttctccacatgttctcttgcc 78207
>emb|Z99758.8|HS800F24 Human DNA sequence from clone RP4-800F24 on chromosome 1q24 Contains part of the NME7 gene for protein expressed in non-metastatic cells 7 (nucleoside-diphosphate kinase) and a novel gene, complete sequence Length = 140788 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ggttgcagtaactcgagatc 213 |||||||||||||||||||| Sbjct: 95013 ggttgcagtaactcgagatc 95032
>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel gene, the 5' end of the CAMTA1 gene for calmodulin binding transcription activator 1, a ribosomal protein L37 (RPL37) pseudogene and a CpG island, complete sequence Length = 204394 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tcctcgccagcagcctttct 320 |||||||||||||||||||| Sbjct: 172953 tcctcgccagcagcctttct 172934
>emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chromosome 1q32.1-32.3 Contains the 5' end of the LRRN5 gene for leucine rich repeat neuronal 5 and a novel gene, complete sequence Length = 162345 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 606 tgacaatttcttttcccttagcttctct 633 ||||| ||||||||||||| |||||||| Sbjct: 25624 tgacactttcttttcccttggcttctct 25597 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 606 tgacaatttcttttcccttagcttctct 633 ||||| ||||||||||||| |||||||| Sbjct: 24930 tgacactttcttttcccttggcttctct 24957
>emb|BX037236.1|CNS090W8 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA9CE02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1008 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 724 atagggttggatagatcttcttct 747
>emb|BX037235.1|CNS090W7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA9CE02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1044 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 481 atagggttggatagatcttcttct 458
>emb|BX029240.1|CNS08UQ4 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA43CH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 964 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 723 atagggttggatagatcttcttct 746
>emb|BX029239.1|CNS08UQ3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA43CH02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 958 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 481 atagggttggatagatcttcttct 458
>emb|BX024216.1|CNS08QUK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA36DG06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 288 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 246 atagggttggatagatcttcttct 223
>gb|AY189120.1| Mus musculus nebulin (Neb) gene, complete sequence Length = 202402 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 aactcgagatctgattggtt 222 |||||||||||||||||||| Sbjct: 2143 aactcgagatctgattggtt 2162
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 catgttctcttgccttctct 343 |||||||||||||||||||| Sbjct: 40046 catgttctcttgccttctct 40065
>gb|AC010536.8| Homo sapiens chromosome 16 clone RP11-278A23, complete sequence Length = 208236 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gatacagtgttaagttaaaa 100 |||||||||||||||||||| Sbjct: 98897 gatacagtgttaagttaaaa 98878
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aaaataggcaatgagcatgc 49 |||||||||||||||||||| Sbjct: 46470 aaaataggcaatgagcatgc 46489
>gb|AC159254.2| Mus musculus BAC clone RP24-112C23 from chromosome 12, complete sequence Length = 163438 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ttgaagccatgcctgttgct 364 |||||||||||||||||||| Sbjct: 21512 ttgaagccatgcctgttgct 21531
>ref|NM_058991.1| Caenorhabditis elegans D1007.13 (D1007.13) mRNA, complete cds Length = 801 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 gcaaaacaaaataggcaatgagca 46 |||||||||||| ||||||||||| Sbjct: 131 gcaaaacaaaattggcaatgagca 108
>dbj|AK082689.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230087D09 product:reelin, full insert sequence Length = 2555 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgcagtaactcgagatctga 216 |||||||||||||||||||| Sbjct: 677 tgcagtaactcgagatctga 696
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aaaataggcaatgagcatgc 49 |||||||||||||||||||| Sbjct: 13354093 aaaataggcaatgagcatgc 13354112
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 15816846 tctcttgccttctcttttgcagcc 15816869
>gb|AC106053.6| Homo sapiens BAC clone RP11-818B6 from 2, complete sequence Length = 178810 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 tttcccttagcttctctcca 636 |||||||||||||||||||| Sbjct: 79150 tttcccttagcttctctcca 79169
>gb|AC010200.8| Homo sapiens 12 BAC RP11-575G13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158149 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ggttgcagtaactcgagatc 213 |||||||||||||||||||| Sbjct: 121941 ggttgcagtaactcgagatc 121960
>gb|AC107317.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-340A17, complete sequence Length = 228371 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 acaggtgactcaggttccag 533 |||||||||||||||||||| Sbjct: 44803 acaggtgactcaggttccag 44822
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 56360 tctcttgccttctcttttgcagcc 56383
>emb|AL935025.11| Zebrafish DNA sequence from clone CH211-160K2 in linkage group 16, complete sequence Length = 147313 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 atgacaatttcttttccctt 624 |||||||||||||||||||| Sbjct: 33241 atgacaatttcttttccctt 33260
>ref|XM_311452.2| Anopheles gambiae str. PEST ENSANGP00000018551 (ENSANGG00000016062), partial mRNA Length = 1479 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 103 atagggttggatagatcttcttct 80
>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence Length = 107815 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 catgttctcttgccttctct 343 |||||||||||||||||||| Sbjct: 103145 catgttctcttgccttctct 103126
>ref|XM_307095.2| Anopheles gambiae str. PEST ENSANGP00000012074 (ENSANGG00000009585), partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 atagggttggatggatcttcttct 291 |||||||||||| ||||||||||| Sbjct: 37 atagggttggatagatcttcttct 14
>dbj|AK101282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033D05, full insert sequence Length = 1419 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 800 tctcttgccttctcttttgcagcc 777
>dbj|AK063477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B04, full insert sequence Length = 2160 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 798 tctcttgccttctcttttgcagcc 775
>dbj|AK059613.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F11, full insert sequence Length = 762 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 tctcttgccttctcttttgaagcc 352 ||||||||||||||||||| |||| Sbjct: 119 tctcttgccttctcttttgcagcc 96
>emb|CT571252.9| Mouse DNA sequence from clone RP24-91J7 on chromosome 12, complete sequence Length = 189925 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ttgaagccatgcctgttgct 364 |||||||||||||||||||| Sbjct: 67359 ttgaagccatgcctgttgct 67378
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aaaataggcaatgagcatgc 49 |||||||||||||||||||| Sbjct: 13361433 aaaataggcaatgagcatgc 13361452
>gb|AC129294.3| Mus musculus BAC clone RP24-548E8 from 3, complete sequence Length = 159390 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atacagtgttaagttaaaat 101 |||||||||||||||||||| Sbjct: 80655 atacagtgttaagttaaaat 80674
>emb|AL845355.11| Mouse DNA sequence from clone RP23-330F15 on chromosome 2, complete sequence Length = 97155 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 aactcgagatctgattggtt 222 |||||||||||||||||||| Sbjct: 78132 aactcgagatctgattggtt 78113
>dbj|AB209049.1| Homo sapiens mRNA for nucleoside-diphosphate kinase 7 isoform a variant protein Length = 4897 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ggttgcagtaactcgagatc 213 |||||||||||||||||||| Sbjct: 1230 ggttgcagtaactcgagatc 1211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,361,737 Number of Sequences: 3902068 Number of extensions: 6361737 Number of successful extensions: 107520 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107278 Number of HSP's gapped (non-prelim): 234 length of query: 715 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 692 effective length of database: 17,143,297,704 effective search space: 11863162011168 effective search space used: 11863162011168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)