ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
2gb|AY111794.1| Zea mays CL13018_1 mRNA sequence 105 1e-19
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 90 8e-15
5emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb... 90 8e-15
6gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 46 0.11
7gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.42
8gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosom... 42 1.6
9dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
10emb|Z66564.1|CEF52D10 Caenorhabditis elegans Cosmid F52D10, comp... 42 1.6
11emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, c... 42 1.6
12gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
13emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chr... 42 1.6
14gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
15gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.5
16gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
17gb|AC162459.2| Mus musculus chromosome 3, clone RP23-80A8, compl... 40 6.5
18gb|AC079598.13| Homo sapiens 12 BAC RP11-248E9 (Roswell Park Can... 40 6.5
19ref|XM_719379.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.5
20gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete seq... 40 6.5
21gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete se... 40 6.5
22gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence 40 6.5
23gb|AC161195.4| Mus musculus chromosome 15, clone RP23-313M10, co... 40 6.5
24emb|AL596187.15| Mouse DNA sequence from clone RP23-287H9 on chr... 40 6.5
25gb|AC113054.14| Mus musculus chromosome 15, clone RP23-251L21, c... 40 6.5
26emb|BX511089.7| Zebrafish DNA sequence from clone DKEY-258P11 in... 40 6.5
27gb|AC116358.2| Homo sapiens chromosome 5 clone RP11-679B13, comp... 40 6.5
28gb|AC114283.2| Homo sapiens chromosome 5 clone CTD-2319M2, compl... 40 6.5
29gb|AC116311.1| Homo sapiens chromosome 5 clone CTD-2212M21, comp... 40 6.5
30gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, comp... 40 6.5
31gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, comp... 40 6.5
32gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosom... 40 6.5
33dbj|AB181301.1| Triticum aestivum pseudogene for omega-5 gliadin 40 6.5
34dbj|AB181300.1| Triticum aestivum gene for omega-5 gliadin, comp... 40 6.5
35dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
37gb|AC012075.10| Homo sapiens BAC clone RP11-492P1 from 2, comple... 40 6.5
38dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
39dbj|AK063561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
40gb|AC102012.7| Mus musculus chromosome 3, clone RP24-542B2, comp... 40 6.5
41gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
42emb|AL669845.9| Mouse DNA sequence from clone RP23-43C21 on chro... 40 6.5
43emb|AL645740.6| Mouse DNA sequence from clone RP23-411H13 on chr... 40 6.5 
>dbj|AK102247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088F06, full
            insert sequence
          Length = 1910

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                        
Query: 335  cccatgttcatcagggtggtgaggtgggggatctccttgggcacagacgccgtcaacacc 394
            ||||||||||| |||||||| | ||| | ||||||||| ||||| ||||||||||  |||
Sbjct: 1511 cccatgttcataagggtggttatgtgagagatctccttcggcaccgacgccgtcaggacc 1452

                                                                        
Query: 395  tcgtggccggactcggtgatgaggacctcgtcctcgatccttattcctatgccacggaac 454
            ||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||| ||
Sbjct: 1451 tcgtgaccagactcggtgatgaggacctcgtcctcgatcctaattccgatgccccggtac 1392

                                      
Query: 455  ctgtccggggccttctcattgagtat 480
            || || ||||| ||||| || |||||
Sbjct: 1391 ctatctggggcgttctctttcagtat 1366
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>gb|AY111794.1| Zea mays CL13018_1 mRNA sequence
          Length = 370

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 334 gcccatgttcatcagggtggtgaggtgggggatctccttgggcacagacgccgtcaacac 393
           ||||||||||||||||||||| ||||| | || |||||||||||| |||||||||   ||
Sbjct: 255 gcccatgttcatcagggtggtcaggtgcgagacctccttgggcaccgacgccgtctcgac 314

                                                    
Query: 394 ctcgtggccggactcggtgatgaggacctcgtcctcgatcc 434
           ||||||||||   |||||||||||||||| |||||||||||
Sbjct: 315 ctcgtggccgtcgtcggtgatgaggaccttgtcctcgatcc 355
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 392      acctcgtggccggactcggtgatgaggacctcgtcctcgatccttattcctatgccacgg 451
                |||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 23144551 acctcgtgaccagactcggtgatgaggacctcgtcctcgatcctaattccgatgccccgg 23144492

                                             
Query: 452      aacctgtccggggccttctcattgagtat 480
                 |||| || ||||| ||||| || |||||
Sbjct: 23144491 tacctatctggggcgttctctttcagtat 23144463



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 335      cccatgttcatcagggtggtgaggtgggggatctccttgggcacagacgccgtca 389
                ||||||||||| |||||||| | ||| | ||||||||| ||||| ||||||||||
Sbjct: 23144717 cccatgttcataagggtggttatgtgagagatctccttcggcaccgacgccgtca 23144663
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 392      acctcgtggccggactcggtgatgaggacctcgtcctcgatccttattcctatgccacgg 451
                |||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 23072742 acctcgtgaccagactcggtgatgaggacctcgtcctcgatcctaattccgatgccccgg 23072683

                                             
Query: 452      aacctgtccggggccttctcattgagtat 480
                 |||| || ||||| ||||| || |||||
Sbjct: 23072682 tacctatctggggcgttctctttcagtat 23072654



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 335      cccatgttcatcagggtggtgaggtgggggatctccttgggcacagacgccgtca 389
                ||||||||||| |||||||| | ||| | ||||||||| ||||| ||||||||||
Sbjct: 23072908 cccatgttcataagggtggttatgtgagagatctccttcggcaccgacgccgtca 23072854
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>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135323

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                         
Query: 392   acctcgtggccggactcggtgatgaggacctcgtcctcgatccttattcctatgccacgg 451
             |||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 33846 acctcgtgaccagactcggtgatgaggacctcgtcctcgatcctaattccgatgccccgg 33905

                                          
Query: 452   aacctgtccggggccttctcattgagtat 480
              |||| || ||||| ||||| || |||||
Sbjct: 33906 tacctatctggggcgttctctttcagtat 33934



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 335   cccatgttcatcagggtggtgaggtgggggatctccttgggcacagacgccgtca 389
             ||||||||||| |||||||| | ||| | ||||||||| ||||| ||||||||||
Sbjct: 33680 cccatgttcataagggtggttatgtgagagatctccttcggcaccgacgccgtca 33734
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 403     ggactcggtgatgaggacctcgt 425
               |||||||||||||||||||||||
Sbjct: 2970822 ggactcggtgatgaggacctcgt 2970800
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 392     acctcgtggccggactcggtga 413
               ||||||||||||||||||||||
Sbjct: 3785935 acctcgtggccggactcggtga 3785956
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>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete
             sequence
          Length = 211243

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 76    aacaacaaaaatgaagatcaaaaac 100
             ||||||||||||||| |||||||||
Sbjct: 45596 aacaacaaaaatgaaaatcaaaaac 45572
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 403   ggactcggtgatgaggacctc 423
             |||||||||||||||||||||
Sbjct: 46159 ggactcggtgatgaggacctc 46179
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>emb|Z66564.1|CEF52D10 Caenorhabditis elegans Cosmid F52D10, complete sequence
          Length = 40972

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    acaacaaaaatgaagatcaaa 97
             |||||||||||||||||||||
Sbjct: 23901 acaacaaaaatgaagatcaaa 23881
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>emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, complete sequence
          Length = 156592

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   ggggaaagaaaatgtatggat 215
             |||||||||||||||||||||
Sbjct: 48847 ggggaaagaaaatgtatggat 48827
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 403     ggactcggtgatgaggacctc 423
               |||||||||||||||||||||
Sbjct: 1866055 ggactcggtgatgaggacctc 1866035
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>emb|CT010510.7| Mouse DNA sequence from clone RP23-306N20 on chromosome 14, complete
             sequence
          Length = 217241

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 76    aacaacaaaaatgaagatcaaaaac 100
             ||||||||||||||| |||||||||
Sbjct: 22966 aacaacaaaaatgaaaatcaaaaac 22990
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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07,
              complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    ttgccatttaggttttcagg 163
              ||||||||||||||||||||
Sbjct: 122036 ttgccatttaggttttcagg 122055
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 409    ggtgatgaggacctcgtcctcgat 432
              ||||||||| ||||||||||||||
Sbjct: 560920 ggtgatgagcacctcgtcctcgat 560897
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>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0039A07 map near 50283S, complete sequence
          Length = 158158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   ggtgaggtgggggatctcct 371
             ||||||||||||||||||||
Sbjct: 50551 ggtgaggtgggggatctcct 50570
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>gb|AC162459.2| Mus musculus chromosome 3, clone RP23-80A8, complete sequence
          Length = 207515

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     caattcccccaacaacaaaa 85
              ||||||||||||||||||||
Sbjct: 102142 caattcccccaacaacaaaa 102161
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>gb|AC079598.13| Homo sapiens 12 BAC RP11-248E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168901

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ttttgccatttaggttttca 161
             ||||||||||||||||||||
Sbjct: 14921 ttttgccatttaggttttca 14940
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>ref|XM_719379.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04213)
           partial mRNA
          Length = 1906

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 79  aacaaaaatgaagatcaaaa 98
           ||||||||||||||||||||
Sbjct: 892 aacaaaaatgaagatcaaaa 911
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>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence
          Length = 105161

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tgaagatcaaaaactttgtc 106
             ||||||||||||||||||||
Sbjct: 26744 tgaagatcaaaaactttgtc 26763
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>gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete sequence
          Length = 106528

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tgaagatcaaaaactttgtc 106
             ||||||||||||||||||||
Sbjct: 73112 tgaagatcaaaaactttgtc 73131
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>gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence
          Length = 208667

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   tcagggtggtgaggtggggg 364
             ||||||||||||||||||||
Sbjct: 55185 tcagggtggtgaggtggggg 55166
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>gb|AC161195.4| Mus musculus chromosome 15, clone RP23-313M10, complete sequence
          Length = 166637

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ccaacaacaaaaatgaagat 93
              ||||||||||||||||||||
Sbjct: 164222 ccaacaacaaaaatgaagat 164203
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>emb|AL596187.15| Mouse DNA sequence from clone RP23-287H9 on chromosome 11 Contains part
             of a novel gene, the 5' end of a gene that is a possible
             ortholog of human dynein axonemal heavy polypeptide 9
             (DNAH9) and a CpG island, complete sequence
          Length = 202358

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 187   acaggaacggggaaagaaaatgtatggatgta 218
             ||||||| || ||||| |||||||||||||||
Sbjct: 27415 acaggaatggagaaaggaaatgtatggatgta 27384
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>gb|AC113054.14| Mus musculus chromosome 15, clone RP23-251L21, complete sequence
          Length = 179314

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    ccaacaacaaaaatgaagat 93
             ||||||||||||||||||||
Sbjct: 46988 ccaacaacaaaaatgaagat 46969
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>emb|BX511089.7| Zebrafish DNA sequence from clone DKEY-258P11 in linkage group 14,
             complete sequence
          Length = 136398

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    aacaacaaaaatgaagatcaaaaa 99
             |||||||| |||||||||||||||
Sbjct: 41034 aacaacaataatgaagatcaaaaa 41057
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>gb|AC116358.2| Homo sapiens chromosome 5 clone RP11-679B13, complete sequence
          Length = 180797

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   aacaaaaatgaagatcaaaa 98
            ||||||||||||||||||||
Sbjct: 6453 aacaaaaatgaagatcaaaa 6472
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>gb|AC114283.2| Homo sapiens chromosome 5 clone CTD-2319M2, complete sequence
          Length = 154535

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aacaaaaatgaagatcaaaa 98
             ||||||||||||||||||||
Sbjct: 47370 aacaaaaatgaagatcaaaa 47389
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>gb|AC116311.1| Homo sapiens chromosome 5 clone CTD-2212M21, complete sequence
          Length = 123905

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aacaaaaatgaagatcaaaa 98
             ||||||||||||||||||||
Sbjct: 79423 aacaaaaatgaagatcaaaa 79442
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>gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, complete sequence
          Length = 170282

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   aggaacggggaaagaaaatg 208
             ||||||||||||||||||||
Sbjct: 78158 aggaacggggaaagaaaatg 78177
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>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence
          Length = 198235

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   aggaacggggaaagaaaatg 208
             ||||||||||||||||||||
Sbjct: 21673 aggaacggggaaagaaaatg 21654
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>gb|AC156639.2| Mus musculus BAC clone RP23-301M11 from chromosome 9, complete sequence
          Length = 188292

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   tctcagctgcaagcagctct 300
             ||||||||||||||||||||
Sbjct: 14163 tctcagctgcaagcagctct 14144
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>dbj|AB181301.1| Triticum aestivum pseudogene for omega-5 gliadin
          Length = 1275

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  acaattcccccaacaacaaa 84
           ||||||||||||||||||||
Sbjct: 170 acaattcccccaacaacaaa 189
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>dbj|AB181300.1| Triticum aestivum gene for omega-5 gliadin, complete cds
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  acaattcccccaacaacaaa 84
           ||||||||||||||||||||
Sbjct: 170 acaattcccccaacaacaaa 189
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 352      ggtgaggtgggggatctcct 371
                ||||||||||||||||||||
Sbjct: 14304939 ggtgaggtgggggatctcct 14304958
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     ggtgaggtgggggatctcct 371
               ||||||||||||||||||||
Sbjct: 7398379 ggtgaggtgggggatctcct 7398398
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>gb|AC012075.10| Homo sapiens BAC clone RP11-492P1 from 2, complete sequence
          Length = 185437

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    ttacaccaacaaatgaagat 64
             ||||||||||||||||||||
Sbjct: 67999 ttacaccaacaaatgaagat 68018
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>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0702F03
          Length = 141111

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   ggtgaggtgggggatctcct 371
             ||||||||||||||||||||
Sbjct: 59407 ggtgaggtgggggatctcct 59426
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>dbj|AK063561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F03, full
            insert sequence
          Length = 1343

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  ttgccatttaggttttcagg 163
            ||||||||||||||||||||
Sbjct: 1161 ttgccatttaggttttcagg 1180
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>gb|AC102012.7| Mus musculus chromosome 3, clone RP24-542B2, complete sequence
          Length = 155366

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   caattcccccaacaacaaaa 85
            ||||||||||||||||||||
Sbjct: 3132 caattcccccaacaacaaaa 3151
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 352      ggtgaggtgggggatctcct 371
                ||||||||||||||||||||
Sbjct: 14386941 ggtgaggtgggggatctcct 14386960
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>emb|AL669845.9| Mouse DNA sequence from clone RP23-43C21 on chromosome 11, complete
             sequence
          Length = 243954

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    caacaacaaaaatgaagatcaaaa 98
             |||||||||||||||| |||||||
Sbjct: 39650 caacaacaaaaatgaaaatcaaaa 39627
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>emb|AL645740.6| Mouse DNA sequence from clone RP23-411H13 on chromosome 4, complete
             sequence
          Length = 172665

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    ccaacaacaaaaatgaagatcaaa 97
             |||||||||| |||||||||||||
Sbjct: 53989 ccaacaacaacaatgaagatcaaa 54012


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,550,978
Number of Sequences: 3902068
Number of extensions: 4550978
Number of successful extensions: 85622
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85247
Number of HSP's gapped (non-prelim): 375
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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