Clone Information

BLAST Search Result

Clone Name	rbags36p04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	259	5e-69
2	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	109	8e-24
3	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	108	1e-23
4	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	105	1e-22
5	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	102	1e-21
6	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	99	1e-20
7	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	99	1e-20
8	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	99	1e-20
9	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	98	3e-20
10	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	97	4e-20
11	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	97	4e-20
12	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	85	2e-16
13	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	78	3e-14
14	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	75	2e-13
15	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	70	7e-12
16	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	67	5e-11
17	NUCL_XENLA (P20397) Nucleolin (Protein C23)	39	0.014
18	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	37	0.040
19	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	37	0.069
20	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	37	0.069
21	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	35	0.20
22	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	35	0.20
23	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	34	0.34
24	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	34	0.45
25	TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A pro...	33	0.76
26	NUCL_CHICK (P15771) Nucleolin (Protein C23)	33	0.76
27	S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplas...	32	1.7
28	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	32	2.2
29	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	32	2.2
30	YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ...	31	2.9
31	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	31	2.9
32	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	31	3.8
33	NUCL_MESAU (P08199) Nucleolin (Protein C23)	31	3.8
34	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	30	4.9
35	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	30	4.9
36	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	30	6.5
37	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	30	6.5
38	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	30	6.5
39	YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 ...	30	6.5
40	NUCL_RAT (P13383) Nucleolin (Protein C23)	30	8.4

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  259 bits (662), Expect = 5e-69
 Identities = 121/184 (65%), Positives = 149/184 (80%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN+D ID DKLFN FS+YGNIVRIK+LRN PDHALV M DG Q EL +H+LKGAML 
Sbjct: 249 VSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLF 308

Query: 482 GQKLEVNFSKYPSITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISALSPEISE 303
           G++LEVNFSK+P+ITP  D+HDY   NLNRFN N AKNYR+CC+PTK+  +S L  +++E
Sbjct: 309 GKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTE 368

Query: 302 DAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLEGSTIRISFSQ 123
           + ++ H+ EHG +V +K+FE +GK  ALVQFE+EEEA EALVCKHA+ L GS IRISFSQ
Sbjct: 369 EEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQ 428

Query: 122 MQNI 111
           +Q I
Sbjct: 429 LQTI 432

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score =  109 bits (272), Expect = 8e-24
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN +++    LF  F +YG++ R+K+L N  ++ALV MADG Q +L + +L G  L 
Sbjct: 365 VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLH 424

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + +  SK+ S+    +         DY +  L+RF    +KN+++   P+    +S 
Sbjct: 425 GKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSN 484

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P +SED +      +G +VK   F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 485 IPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENH 544

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 545 HLRVSFSK 552



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -3

Query: 353 APTKIXXISALSPE-ISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALV 177
           A   +  +S L+PE ++  ++    G +G + + K+   + K  ALV+     +A  A+ 
Sbjct: 358 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVEMADGSQAQLAMS 416

Query: 176 CKHASKLEGSTIRISFSQMQNI 111
             +  KL G ++RI+ S+ Q++
Sbjct: 417 HLNGHKLHGKSVRITLSKHQSV 438

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score =  108 bits (270), Expect = 1e-23
 Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN +++    LF  F +YG++ R+KVL N  ++ALV MADG Q +L + +L G  L 
Sbjct: 341 VSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLH 400

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + +  SK+ S+    +         DY    L+RF    +KN+++   P+    +S 
Sbjct: 401 GKPVRITLSKHQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 460

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ISED +      +G IVK   F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 461 IPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENH 520

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 521 HLRVSFSK 528



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -3

Query: 353 APTKIXXISALSPE-ISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALV 177
           A   +  +S L+PE ++  ++    G +G + + K+   + K  ALVQ     +A  A+ 
Sbjct: 334 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVL-FNKKENALVQMADGSQAQLAMS 392

Query: 176 CKHASKLEGSTIRISFSQMQNI 111
             +  KL G  +RI+ S+ Q++
Sbjct: 393 HLNGHKLHGKPVRITLSKHQSV 414

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score =  105 bits (262), Expect = 1e-22
 Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN +++    LF  F +YG++ R+K+L N  ++ALV MADG Q +L + +L G  L 
Sbjct: 341 VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH 400

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + +  SK+ ++    +         DY    L+RF    +KN+++   P+    +S 
Sbjct: 401 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 460

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P +SE+ +      +G +VK   F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 461 IPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENH 520

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 521 HLRVSFSK 528



 Score = 34.3 bits (77), Expect = 0.34
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -3

Query: 353 APTKIXXISALSPE-ISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALV 177
           A   +  +S L+PE ++  ++    G +G + + K+   + K  ALVQ     +A  A+ 
Sbjct: 334 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGNQAQLAMS 392

Query: 176 CKHASKLEGSTIRISFSQMQNI 111
             +  KL G  IRI+ S+ QN+
Sbjct: 393 HLNGHKLHGKPIRITLSKHQNV 414

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  102 bits (253), Expect = 1e-21
 Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN +++    LF  F +Y ++ R+K+L N  ++ALV MADG Q +L + +L G  L 
Sbjct: 367 VSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLH 426

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + +  SK+ ++    +         DY    L+RF    +KN+++   P+    +S 
Sbjct: 427 GKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 486

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ISE+ +      +G IVK   F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 487 IPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENH 546

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 547 HLRVSFSK 554



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 353 APTKIXXISALSPE-ISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALV 177
           A   +  +S L+PE ++  ++    G +  + + K+   + K  ALVQ     +A  A+ 
Sbjct: 360 AGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKIL-FNKKENALVQMADGSQAQLAMS 418

Query: 176 CKHASKLEGSTIRISFSQMQNI 111
             +  KL G  +RI+ S+ QN+
Sbjct: 419 HLNGHKLHGKPVRITLSKHQNV 440

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN + +    LF  F +YG++ R+K+L N  D AL+ MADG Q++L +++L G  + 
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMY 401

Query: 482 GQKLEVNFSKYPSITPAPD-------AHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + V  SK+ ++    +         D+    L+RF    +KN+++   P+    +S 
Sbjct: 402 GKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 461

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ++E+ +       G  VK+  F    K  AL+Q  + EEA +AL+  H   L E  
Sbjct: 462 IPPSVAEEDLRTLFANTGGTVKAFKFFQDHKM-ALLQMATVEEAIQALIDLHNYNLGENH 520

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 521 HLRVSFSK 528

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN + +    LF  F +YG++ R+K+L N  D AL+ MADG Q++L +++L G  + 
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMY 401

Query: 482 GQKLEVNFSKYPSITPAPD-------AHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + V  SK+ ++    +         D+    L+RF    +KN+++   P+    +S 
Sbjct: 402 GKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 461

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ++E+ +       G  VK+  F    K  AL+Q  + EEA +AL+  H   L E  
Sbjct: 462 IPPSVAEEDLRTLFANTGGTVKAFKFFQDHKM-ALLQMATVEEAIQALIDLHNYNLGENH 520

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 521 HLRVSFSK 528

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VSNLN + +    LF  F +YG++ R+K+L N  D AL+ MADG Q++L +++L G  + 
Sbjct: 342 VSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMY 401

Query: 482 GQKLEVNFSKYPSITPAPD-------AHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ + V  SK+ ++    +         D+    L+RF    +KN+++   P+    +S 
Sbjct: 402 GKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 461

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ++E+ +       G  VK+  F    K  AL+Q  + EEA +AL+  H   L E  
Sbjct: 462 IPPSVAEEDLRTLFANTGGTVKAFKFFQDHKM-ALLQMATVEEAIQALIDLHNYNLGENH 520

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 521 HLRVSFSK 528

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 97.8 bits (242), Expect = 3e-20
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           V+NLN D I    LF  F +YG++ R+K++ N  ++ALV MAD  Q +L +++L G  L 
Sbjct: 333 VTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLY 392

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ L    SK+ ++    +         D+S   L+RF    +KN+++   P+    +S 
Sbjct: 393 GKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSN 452

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ++ D +     E G  VK+  F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 453 IPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH 512

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 513 HLRVSFSK 520

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           V+NLN D I    LF  F +YG++ R+K++ N  ++ALV MAD  Q ++ +++L G  L 
Sbjct: 333 VTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLY 392

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ L    SK+ ++    +         D+S   L+RF    +KN+++   P+    +S 
Sbjct: 393 GKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSN 452

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ++ D +     E G  VK+  F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 453 IPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH 512

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 513 HLRVSFSK 520

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           V+NLN D I    LF  F +YG++ R+K++ N  ++ALV MAD  Q +L +++L G  L 
Sbjct: 331 VTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLY 390

Query: 482 GQKLEVNFSKYPSITPAPDAH-------DYSTXNLNRFNSNVAKNYRHCCAPTKIXXISA 324
           G+ L    SK+ ++    +         D+S   L+RF    +KN+++   P+    +S 
Sbjct: 391 GKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSN 450

Query: 323 LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGS 147
           + P ++ D +     E G  VK+  F    +  AL+Q  S EEA +AL+  H   L E  
Sbjct: 451 IPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH 510

Query: 146 TIRISFSQ 123
            +R+SFS+
Sbjct: 511 HLRVSFSK 518

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 7/187 (3%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELX--IHYLKGAM 489
           VSNLN +++    LF  F +YG++ R+K+L N  ++ALV MADG Q +L       + A 
Sbjct: 339 VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAR 398

Query: 488 LLGQKLEVNFSKYPSITPAPD----AHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISAL 321
            +     V  S+  +     +      DY +  L RF    +KN+++   P+    +S +
Sbjct: 399 EVSAHYTVQASECAAAREGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNI 457

Query: 320 SPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKL-EGST 144
            P +SED +      +G +VK   F    +  AL+Q  S EEA +AL+  H   L E   
Sbjct: 458 PPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHH 517

Query: 143 IRISFSQ 123
           +R+SFS+
Sbjct: 518 LRVSFSK 524

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           V  L+  K++ D++FN F +YGN+ ++K +++ P  A+V MADG   +  I +L    + 
Sbjct: 355 VYGLDQSKMNGDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF 414

Query: 482 GQKLEVNFSKYPSITPAP---------DAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXI 330
           GQKL V  SK P+I P              D+S    NRF++           P+ +   
Sbjct: 415 GQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHF 474

Query: 329 SALSPEISEDAIIEHLGEHGTIVKSKLFEASGK----T*ALVQFESEEEATEAL 180
                E++E+   E   E G    S +   SGK    +  L+++ES+ +A E L
Sbjct: 475 FNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 528

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           V  L+  K++ D++FN F +YGN+ ++K +++ P  A+V MADG   +  I +L    + 
Sbjct: 352 VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF 411

Query: 482 GQKLEVNFSKYPSITPAP---------DAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXI 330
           GQK+ V  SK P+I P              D+S    NRF++           P+ +   
Sbjct: 412 GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHF 471

Query: 329 SALSPEISEDAIIEHLGEHGTIVKSKLFEASGK----T*ALVQFESEEEATEAL 180
                E++E+   E   E G    + +   SGK    +  L++++S+ +A E L
Sbjct: 472 FNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 525

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VS L+  K++  ++FN F +YGNI ++K ++  P  ALV M D    E  + +L    L 
Sbjct: 339 VSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLF 398

Query: 482 GQKLEVNFSKYPSITPA---------PDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXI 330
           G++L V  SK  S+ P+             D++    NRF S    +      P+ +   
Sbjct: 399 GKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHY 458

Query: 329 SALSPEISEDAIIEHLGEHG--TIVKSKLFEA--SGKT*A-LVQFESEEEATEALVCKHA 165
             +   ++E+   +   +H   T +K K+F+A  S KT + L+++E + +A EAL   + 
Sbjct: 459 YNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNH 518

Query: 164 SKL---EGS---TIRISFSQMQNI 111
            ++    GS   T+++ FS   ++
Sbjct: 519 YQIRVPNGSNPYTLKLCFSTSSHL 542

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           VS L+  K++  ++FN F +YGNI ++K ++  P  ALV M D    E  + +L    L 
Sbjct: 388 VSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLF 447

Query: 482 GQKLEVNFSKYPSITPA---------PDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXI 330
           G++L V  SK  S+ P+             D++    NRF S    +      P+ +   
Sbjct: 448 GKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHY 507

Query: 329 SALSPEISEDAIIEHLGEHGTI--VKSKLFE--ASGKT*A-LVQFESEEEATEALVCKHA 165
             +   ++E+   +   +H  +  +K K+F+  AS KT + L++++ + +A EAL   + 
Sbjct: 508 YNVPLCVTEETFTKLCNDHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNH 567

Query: 164 SKL---EGS---TIRISFSQMQNI 111
            ++    GS   T+++ FS   ++
Sbjct: 568 YQIRVPNGSNPYTLKLCFSTSSHL 591

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 22/75 (29%), Positives = 44/75 (58%)
 Frame = -3

Query: 347 TKIXXISALSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKH 168
           +K+  ++ LS   +ED++ E + E  T ++    +   K  A ++F S E+A +A+   +
Sbjct: 413 SKVLVVNNLSYSATEDSLRE-VFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCN 471

Query: 167 ASKLEGSTIRISFSQ 123
            +++EG +IR+ FSQ
Sbjct: 472 NTEIEGRSIRLEFSQ 486



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 245 EASGKT*ALVQFESEEEATEALVCKHASKLEGSTIRISFS 126
           + S K  A V+F +E+EA +AL  K  +++EG +I + F+
Sbjct: 357 DGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT 396

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 37.4 bits (85), Expect = 0.040
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
 Frame = -3

Query: 368 YRHCCAPTKIXXISALSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEAT 189
           +R+   P+K+  +  L  E +E+ +IE     GT+V +K    + +  A ++FE   +A 
Sbjct: 10  FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69

Query: 188 EALVCKHASKLE-----GSTIRISFSQMQNI 111
           + ++  +AS  E     G T+ + +S  Q I
Sbjct: 70  Q-MISYYASSSEPAQVRGKTVYLQYSNRQEI 99

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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 2/177 (1%)
 Frame = -3

Query: 623 LFNXFSIYGNIVRI--KVLRNXPDHALVXMADGLQTELXIHYLKGAMLLGQKLEVNFSKY 450
           L N F  +G IV I  K +   P +A +   D       I  + G  L   +L++ F K 
Sbjct: 455 LRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGK- 513

Query: 449 PSITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISALSPEISEDAIIEHLGEHG 270
                                            PT    +  LS  +S+  +  H   +G
Sbjct: 514 -------------------------------SMPTNCVWLDGLSSNVSDQYLTRHFCRYG 542

Query: 269 TIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI*QFF 99
            +VK       G   ALV +   E+A  A+      K+ G+ I++ F+  ++   F+
Sbjct: 543 PVVKVVFDRLKGM--ALVLYSEIEDAQAAVKETKGRKIGGNKIKVDFANRESQLAFY 597

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHALVXMADGLQTELXIHYLKGAMLL 483
           V NL +DK+  D L   F+ YG +  + +  N P  A V        E     L G+ LL
Sbjct: 11  VGNL-TDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELL 69

Query: 482 GQKLEVNFSK 453
           G +L V  SK
Sbjct: 70  GSQLRVEISK 79

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>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = -3

Query: 446 SITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISALSPEISEDAIIEHLGEHGT 267
           ++  +P A D +T  L R  S          A  K   +  L  +++E  +IEH  + GT
Sbjct: 64  AMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGT 123

Query: 266 IVKSKLF--EASGKT--*ALVQFESEEEATEALVCK 171
           + K+++   + SGK      V F++ + A +A V K
Sbjct: 124 VEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159

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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 2/177 (1%)
 Frame = -3

Query: 623 LFNXFSIYGNIVRI--KVLRNXPDHALVXMADGLQTELXIHYLKGAMLLGQKLEVNFSKY 450
           L N F  +G IV I  K +   P +A +   D       I  + G  L   +L++ F K 
Sbjct: 454 LRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGK- 512

Query: 449 PSITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISALSPEISEDAIIEHLGEHG 270
                                            PT    +  LS  +S+  +  H   +G
Sbjct: 513 -------------------------------SMPTNCVWLDGLSSNVSDQYLTRHFCRYG 541

Query: 269 TIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI*QFF 99
            +VK       G   ALV +   E A  A+      K+ G+ I++ F+  ++   F+
Sbjct: 542 PVVKVVFDRLKGM--ALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFY 596

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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -3

Query: 332 ISALSPEISEDAIIEHLGEHGTIVKSKLFE---ASGKT*ALVQFESEEEATEALVCKHAS 162
           +  L P IS++ + E     GT+  SK+      + K    V F + EEATEA+      
Sbjct: 322 VKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK 381

Query: 161 KLEGSTIRISFSQ 123
            +E   + ++ +Q
Sbjct: 382 MIESKPLYVAIAQ 394

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
 Frame = -3

Query: 512 IHYLKGAMLLGQKLEVNFSKYPSITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXX 333
           I  L    + G+K++VN ++ P      +  D +T          A++ +   +P K+  
Sbjct: 142 IEKLNDTEIGGRKIKVNITEKPL-----EGMDIATTQ--------AEDSQFVESPYKVY- 187

Query: 332 ISALSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*A----LVQFESEEEATEALVCKHA 165
           I  L+  ++ + + +   E G ++ +K+    G + +     V F SEEE   A+   + 
Sbjct: 188 IGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNN 247

Query: 164 SKLEGSTIRIS 132
           S LEG  IR++
Sbjct: 248 SVLEGQKIRVN 258

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>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -3

Query: 323  LSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLEGST 144
            L+P+I    +     +HG ++   L    G   ALV++ S+EE  +A    H   L  +T
Sbjct: 1788 LTPQIDGSTLRTLCMQHGPLITFHLNLPHGN--ALVRYSSKEEVVKAQKSLHMCVLGNTT 1845

Query: 143  IRISFSQMQNI*QFF 99
            I   F+  + I +FF
Sbjct: 1846 ILAEFASEEEISRFF 1860

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = -3

Query: 347 TKIXXISALSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKH 168
           +K   ++ LS   SE+ + E   +  +I   +  +   K  A V+F + E+A EAL   +
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519

Query: 167 ASKLEGSTIRISFS 126
            +++EG  IR+ FS
Sbjct: 520 NTEIEGRAIRLEFS 533

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>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 387

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 199 SSLSNCTRAXVLPLASNSFDLTMVPCSPRCSMIASSDISGESAEM 333
           +S++ C+R+ VLP  S      +VP S     + SS + GES  M
Sbjct: 3   TSMACCSRSIVLPRVSPQHSSALVPSSINLKSLKSSSLFGESLRM 47

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>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 6/167 (3%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHA----LVXMADGLQTELXIHYLKG 495
           + N   D +D  +L   FS +GN + +KV+ +    +     V   +  + +  +  + G
Sbjct: 195 IKNFGED-MDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNG 253

Query: 494 AMLLGQKLEVNFSKYPSITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISALSP 315
             + G+ + V  ++            +      R N     N            +  L  
Sbjct: 254 KEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN----------LYVKNLDD 303

Query: 314 EISEDAIIEHLGEHGTIVKSKLFEASG--KT*ALVQFESEEEATEAL 180
            I +D + +    +GTI  +K+    G  K    V F S EEAT+A+
Sbjct: 304 GIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -3

Query: 350 PTKIXXISALSPEISEDAIIEHLGEHGTIVKSKL----FEASGKT*ALVQFESEEEATEA 183
           P+    +  LS     DAI E   +HG +V  ++         K    VQF + E+A +A
Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324

Query: 182 LVCKHASKLEGSTIRISFS 126
           L       ++   +R+ FS
Sbjct: 325 LDALQGEYIDNRPVRLDFS 343

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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 1140

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +1

Query: 130 KEILMVDPSSLLACLQTRASVASSSLSNCTRAXVLPLASNSFDLTMVPCSPRCSMIASSD 309
           KE+     S + + L + +S ASS++S       LP +S    +T  P S       SS 
Sbjct: 217 KEVFSSSTSDVSSLLSSTSSPASSTISE-----TLPFSSTILSITSSPVSSEAPSATSSS 271

Query: 310 ISGESAEMXMILVGAQ 357
           +S E++      V ++
Sbjct: 272 VSSEASSSTSSSVSSE 287

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>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = -3

Query: 305 EDAIIEHLGEHGTIVKSKLFEASGKT*AL-------VQFESEEEATEALVCKHASKLEGS 147
           ED +    G++GT+ +  +FE +     +       VQF   EE T+ALV        G 
Sbjct: 301 EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGR 360

Query: 146 TIRISF 129
           T+R +F
Sbjct: 361 TVRATF 366

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -3

Query: 287 HLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLEGSTIRISFS 126
           H   +G IV  ++     +  A +Q+E++E+AT AL   ++SKL    I + ++
Sbjct: 116 HFEPYGKIVNVRI----RRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 347 TKIXXISALSPEISEDAIIEHLGEHGTIVK-SKLFEASGKT*ALVQFESEEEATEALVCK 171
           +K   +S LS   +E+ + E + E  T +K  +  +   K  A ++F S E+A EAL   
Sbjct: 484 SKTLVLSNLSYSATEETLQE-VFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSC 542

Query: 170 HASKLEGSTIRI 135
           +  ++EG TIR+
Sbjct: 543 NKMEIEGRTIRL 554

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>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 6/167 (3%)
 Frame = -3

Query: 662 VSNLNSDKIDADKLFNXFSIYGNIVRIKVLRNXPDHA----LVXMADGLQTELXIHYLKG 495
           + N   D +D  +L   FS +GN + +KV+ +    +     V   +  + +  +  + G
Sbjct: 195 IKNFGED-MDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNG 253

Query: 494 AMLLGQKLEVNFSKYPSITPAPDAHDYSTXNLNRFNSNVAKNYRHCCAPTKIXXISALSP 315
             + G+ + V  ++      +     +      R N     N            +  L  
Sbjct: 254 KEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN----------LYVKNLDD 303

Query: 314 EISEDAIIEHLGEHGTIVKSKLFEASG--KT*ALVQFESEEEATEAL 180
            I +D + +    +GTI  +K+    G  K    V F S EEAT+A+
Sbjct: 304 GIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 290 EHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLEGSTIRISFS 126
           +H   +G IV  ++     +  A +Q+E++E+AT AL   + SKL    I + ++
Sbjct: 116 KHFEPYGKIVNVRI----RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = -3

Query: 350 PTKIXXISALSPEISEDAIIEHLGEHGTIVK-----SKLFEASGKT*ALVQFESEEEATE 186
           PTK+  I  L+  +++D I+E    +G I        +      K  A V+FE+ EEA +
Sbjct: 137 PTKVH-IGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEK 195

Query: 185 ALVCKHASKLEGSTIRIS 132
           AL      +++G  I  S
Sbjct: 196 ALKHMDGGQIDGQEITAS 213

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = -3

Query: 332 ISALSPEISEDAIIEHLGEHGTIVKSKLFEASGKT*ALVQFESEEEATEALVCKHASKLE 153
           +  L  ++ E  + +   ++G I    +    G   A V+FE   +A +A+  +   + +
Sbjct: 13  VGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFD 72

Query: 152 GSTIRISFSQ 123
           G  IR+ F++
Sbjct: 73  GRRIRVEFTR 82

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = -3

Query: 350 PTKIXXISALSPEISEDAIIEHLGEHGTIVKSKLF--EASGKT*AL--VQFESEEEATEA 183
           PT    +  +  +I +  + +   EHG +V +++     SG++     V   SE E +EA
Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248

Query: 182 LVCKHASKLEGSTIRISFSQ 123
           +       L+G TIR++ ++
Sbjct: 249 IANLDGQTLDGRTIRVNAAE 268

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>YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic|
           region
          Length = 1584

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 58  ESLEXKRGHLTXSRKNCYMFCIWEKEILMVDPSSLLACLQTRASVASSSLSN 213
           E++  KRG+L   +KN  +F +   EI+   PSS L    TR S   S++S+
Sbjct: 765 ENVISKRGNLII-KKNLSIFGLPSNEIMSGSPSSYLGSSHTRTSSKLSNMSD 815

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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -3

Query: 347 TKIXXISALSPEISEDAIIEHLGEHGTIVK-SKLFEASGKT*ALVQFESEEEATEALVCK 171
           +K   +S LS   +E+ + E + E  T +K  +      K  A ++F S E+A EAL   
Sbjct: 487 SKTLVLSNLSYSATEETLQE-VFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSC 545

Query: 170 HASKLEGSTIRI 135
           +  ++EG TIR+
Sbjct: 546 NKMEIEGRTIRL 557


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,655,906
Number of Sequences: 219361
Number of extensions: 1468881
Number of successful extensions: 3477
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3464
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result