ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001031301.1| Gallus gallus Sin3A-associated protein, 130k... 40 2.7
2gb|AC127319.4| Mus musculus BAC clone RP23-229N3 from 5, complet... 40 2.7
3emb|AJ851560.1| Gallus gallus mRNA for hypothetical protein, clo... 40 2.7
4emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 i... 40 2.7
5gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, co... 40 2.7

>ref|NM_001031301.1| Gallus gallus Sin3A-associated protein, 130kDa (SAP130), mRNA
          Length = 3997

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 77   tcatccttttttattcacatgctc 100
            ||||||||||||||||| ||||||
Sbjct: 3343 tcatccttttttattcagatgctc 3320



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>gb|AC127319.4| Mus musculus BAC clone RP23-229N3 from 5, complete sequence
          Length = 188794

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cttcaaattttcaagagatg 177
             ||||||||||||||||||||
Sbjct: 30487 cttcaaattttcaagagatg 30506



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>emb|AJ851560.1| Gallus gallus mRNA for hypothetical protein, clone 7d5
          Length = 3997

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 77   tcatccttttttattcacatgctc 100
            ||||||||||||||||| ||||||
Sbjct: 3343 tcatccttttttattcagatgctc 3320



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>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3,
             complete sequence
          Length = 147441

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    attaaggcaattccaaaggc 43
             ||||||||||||||||||||
Sbjct: 66421 attaaggcaattccaaaggc 66440



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>gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, complete sequence
          Length = 207364

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   cttcaaattttcaagagatg 177
             ||||||||||||||||||||
Sbjct: 24357 cttcaaattttcaagagatg 24338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,719,649
Number of Sequences: 3902068
Number of extensions: 1719649
Number of successful extensions: 134897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134886
Number of HSP's gapped (non-prelim): 11
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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