ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37d19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 341 bits (172), Expect = 2e-90 Identities = 334/388 (86%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| |||| |||||||| ||||| | | || || |||||||||||||||| Sbjct: 877 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 818 Query: 239 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 298 | |||||||| ||||||||| | ||||| |||||||| ||| ||| | |||||||| Sbjct: 817 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 758 Query: 299 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 358 |||| || || |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 757 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 698 Query: 359 taccatcagcctcgattcccttcttgatgtactcactgaagtgagattggtacttctcag 418 | |||||||| || ||||||||||||| ||||||||||||||| | |||| | ||||||| Sbjct: 697 tgccatcagcatcaattcccttcttgaggtactcactgaagtgggcttggaatttctcag 638 Query: 419 gttcctcatcagccagtgacttcatgtagtcagcaacatgccctccatagatgtatttgc 478 ||||||| || |||| ||| ||||||||||||| || ||||| || |||||||| |||| Sbjct: 637 gttcctcctccgccatagacctcatgtagtcagccacgtgcccaccgtagatgtacttgc 578 Query: 479 ggtgaatctcagcatccagctgcttctcatccttcttgaagccagcaaatctcttgtcac 538 ||||||| |||| ||| ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 577 ggtgaatatcagaatcaagctgcttctcgtccttcttgaacccagcaaacctcttgtcac 518 Query: 539 tgtgcggaatatcaagaccaccatccaa 566 |||| ||||| ||||||||||||||||| Sbjct: 517 tgtgaggaatgtcaagaccaccatccaa 490
>dbj|AK104693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H05, full insert sequence Length = 1219 Score = 341 bits (172), Expect = 2e-90 Identities = 334/388 (86%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| |||| |||||||| ||||| | | || || |||||||||||||||| Sbjct: 973 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 914 Query: 239 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 298 | |||||||| ||||||||| | ||||| |||||||| ||| ||| | |||||||| Sbjct: 913 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 854 Query: 299 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 358 |||| || || |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 853 atttggccatggtaggatcagcacggatggcagcatggaccttcttgtacagtgcttcca 794 Query: 359 taccatcagcctcgattcccttcttgatgtactcactgaagtgagattggtacttctcag 418 | |||||||| || ||||||||||||| ||||||||||||||| | |||| | ||||||| Sbjct: 793 tgccatcagcatcaattcccttcttgaggtactcactgaagtgggcttggaatttctcag 734 Query: 419 gttcctcatcagccagtgacttcatgtagtcagcaacatgccctccatagatgtatttgc 478 ||||||| || |||| ||| ||||||||||||| || ||||| || |||||||| |||| Sbjct: 733 gttcctcctccgccatagacctcatgtagtcagccacgtgcccaccgtagatgtacttgc 674 Query: 479 ggtgaatctcagcatccagctgcttctcatccttcttgaagccagcaaatctcttgtcac 538 ||||||| |||| ||| ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 673 ggtgaatatcagaatcaagctgcttctcgtccttcttgaacccagcaaacctcttgtcac 614 Query: 539 tgtgcggaatatcaagaccaccatccaa 566 |||| ||||| ||||||||||||||||| Sbjct: 613 tgtgaggaatgtcaagaccaccatccaa 586
>gb|BT016492.1| Zea mays clone Contig325 mRNA sequence Length = 1365 Score = 327 bits (165), Expect = 2e-86 Identities = 300/345 (86%) Strand = Plus / Minus Query: 222 gagactggccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctt 281 |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| Sbjct: 902 gagactggccttcctctgctcgtatgtcagtttcttggggttgtacctcttgtgctcctt 843 Query: 282 tggtggttccttggttgattttgctattgtaggatcagcacgaatggcagcatgaacctt 341 |||||| | ||||||||| || | | | |||||||||||| ||||||||||| ||||| Sbjct: 842 tggtggctgcttggttgacttgaccacagaaggatcagcacggatggcagcatggacctt 783 Query: 342 cttgtacagtgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtg 401 ||||||||| |||||||| | |||||||| ||||||||||| ||||||||||||||||| Sbjct: 782 cttgtacagagcttccatgtcgtcagcctcaattcccttcttaatgtactcactgaagtg 723 Query: 402 agattggtacttctcaggttcctcatcagccagtgacttcatgtagtcagcaacatgccc 461 ||| ||||||||||| || ||||| ||||| || | ||||||||||||||||||| || Sbjct: 722 agactggtacttctctggctcctcttcagcgaggttcctcatgtagtcagcaacatggcc 663 Query: 462 tccatagatgtatttgcggtgaatctcagcatccagctgcttctcatccttcttgaagcc 521 ||||||||||| ||||| || || ||||||||||||||||| |||||||||||||| || Sbjct: 662 accatagatgtacttgcgatggatatcagcatccagctgcttgtcatccttcttgaaacc 603 Query: 522 agcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 |||||| ||||| || ||||| |||||||| || ||||||||||| Sbjct: 602 agcaaacctcttctcgctgtgaggaatatccaggccaccatccaa 558
>emb|X64622.1|OS5SRRNMR O.sativa Rrl5 mRNA for 5S ribosomal RNA Length = 1114 Score = 327 bits (165), Expect = 2e-86 Identities = 334/389 (85%), Gaps = 1/389 (0%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| |||| |||||||| ||||| | | || || |||||||||||||||| Sbjct: 887 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 828 Query: 239 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 298 | |||||||| ||||||||| | ||||| |||||||| ||| ||| | |||||||| Sbjct: 827 gttcgtaggttagcttcttgaggttgtatctcttgtgggtcgccggttccttcttggttg 768 Query: 299 attttgctattgtagg-atcagcacgaatggcagcatgaaccttcttgtacagtgcttcc 357 |||| || || ||||| ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 767 atttggccatggtagggatcagcacggatggcagcatggaccttcttgtacagtgcttcc 708 Query: 358 ataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggtacttctca 417 || |||||||| || ||||||||||||| ||||||||||||||| | |||| | |||||| Sbjct: 707 atgccatcagcatcaattcccttcttgaggtactcactgaagtgggcttggaatttctca 648 Query: 418 ggttcctcatcagccagtgacttcatgtagtcagcaacatgccctccatagatgtatttg 477 |||||||| || |||| ||| ||||||||||||| || ||||| || |||||||| ||| Sbjct: 647 ggttcctcctccgccatagacctcatgtagtcagccacgtgcccaccgtagatgtacttg 588 Query: 478 cggtgaatctcagcatccagctgcttctcatccttcttgaagccagcaaatctcttgtca 537 |||||||| |||| ||| ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 587 cggtgaatatcagaatcaagctgcttctcgtccttcttgaacccagcaaacctcttgtca 528 Query: 538 ctgtgcggaatatcaagaccaccatccaa 566 ||||| ||||| ||||||||||||||||| Sbjct: 527 ctgtgaggaatgtcaagaccaccatccaa 499
>gb|AY109375.1| Zea mays CL457_2 mRNA sequence Length = 1397 Score = 327 bits (165), Expect = 2e-86 Identities = 297/341 (87%) Strand = Plus / Minus Query: 226 ctggccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggt 285 ||||||||||||||||| || |||||||||||||| ||||||||||| ||| ||||||| Sbjct: 914 ctggccttcctctgctcatatgtcagcttcttggggttgtacctcttatgctcctttggt 855 Query: 286 ggttccttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttg 345 || | ||||||||| || | || | |||||||||||| ||||||||||| ||||||||| Sbjct: 854 ggctgcttggttgacttgacaatggaaggatcagcacggatggcagcatggaccttcttg 795 Query: 346 tacagtgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagat 405 ||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 794 tacagagcttccatgtcatcagcctcaattcccttcttaatgtactcactgaagtgagac 735 Query: 406 tggtacttctcaggttcctcatcagccagtgacttcatgtagtcagcaacatgccctcca 465 ||||||||||| || ||||| ||||| || | ||||||||||||||||||| || ||| Sbjct: 734 tggtacttctctggctcctcttcagcgaggttcctcatgtagtcagcaacatggccacca 675 Query: 466 tagatgtatttgcggtgaatctcagcatccagctgcttctcatccttcttgaagccagca 525 |||||||| ||||| || || ||||||||||||||||| |||||||||||||| |||||| Sbjct: 674 tagatgtacttgcgatggatatcagcatccagctgcttgtcatccttcttgaaaccagca 615 Query: 526 aatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 || ||||| || ||||| |||||||| || ||||||||||| Sbjct: 614 aacctcttctcgctgtgaggaatatccaggccaccatccaa 574
>dbj|AK065268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full insert sequence Length = 1219 Score = 325 bits (164), Expect = 9e-86 Identities = 299/344 (86%) Strand = Plus / Minus Query: 223 agactggccttcctctgctcgtaggtcagcttcttgggattgtacctcttgtgcgtcttt 282 ||||||||||||||||| |||||||| ||||||||| | ||||| |||||||| ||| Sbjct: 930 agactggccttcctctgttcgtaggttagcttcttgaggttgtatctcttgtgggtcgcc 871 Query: 283 ggtggttccttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttc 342 ||| | |||||||||||| || || |||||||||||||| ||||||||||| |||||| Sbjct: 870 ggttccttcttggttgatttggccatggtaggatcagcacggatggcagcatggaccttc 811 Query: 343 ttgtacagtgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtga 402 ||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 810 ttgtacagtgcttccatgccatcagcatcaattcccttcttgaggtactcactgaagtgg 751 Query: 403 gattggtacttctcaggttcctcatcagccagtgacttcatgtagtcagcaacatgccct 462 | |||| | |||||||||||||| || |||| ||| ||||||||||||| || ||||| Sbjct: 750 gcttggaatttctcaggttcctcctccgccatagacctcatgtagtcagccacgtgccca 691 Query: 463 ccatagatgtatttgcggtgaatctcagcatccagctgcttctcatccttcttgaagcca 522 || |||||||| ||||||||||| ||| ||| ||||||||||| ||||||||||| ||| Sbjct: 690 ccgtagatgtacttgcggtgaataccagaatcaagctgcttctcgtccttcttgaaccca 631 Query: 523 gcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 630 gcaaacctcttgtcactgtgaggaatgtcaagaccaccatccaa 587
>ref|NM_190269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 317 bits (160), Expect = 2e-83 Identities = 331/388 (85%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| | || |||||||| ||||| | | || ||||||||||||||||||| Sbjct: 886 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 827 Query: 239 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 298 |||||||||||||||||||| | ||||| |||||||| || ||| | |||||| | Sbjct: 826 gctcgtaggtcagcttcttgaggttgtatctcttgtgggtagccggttccttcttggtcg 767 Query: 299 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 358 |||| || || |||||||| || || ||||||||||| |||||||||||||||| ||||| Sbjct: 766 atttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacagtgattcca 707 Query: 359 taccatcagcctcgattcccttcttgatgtactcactgaagtgagattggtacttctcag 418 | |||||||| || ||||||||||||| ||||||||| ||||| | |||| | ||||||| Sbjct: 706 tgccatcagcgtcaattcccttcttgaggtactcactaaagtgggcttggaatttctcag 647 Query: 419 gttcctcatcagccagtgacttcatgtagtcagcaacatgccctccatagatgtatttgc 478 ||||||| ||||||| ||| ||||||||||||| || ||||| || |||||||| |||| Sbjct: 646 gttcctcctcagccatagacctcatgtagtcagccacgtgcccaccgtagatgtacttgc 587 Query: 479 ggtgaatctcagcatccagctgcttctcatccttcttgaagccagcaaatctcttgtcac 538 ||||||| |||| ||| ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 586 ggtgaatatcagaatcaagctgcttctcgtccttcttgaacccagcaaacctcttgtcac 527 Query: 539 tgtgcggaatatcaagaccaccatccaa 566 |||| ||||| ||||||||||||||||| Sbjct: 526 tgtgaggaatgtcaagaccaccatccaa 499
>gb|BT016417.1| Zea mays clone Contig250 mRNA sequence Length = 1212 Score = 246 bits (124), Expect = 7e-62 Identities = 322/388 (82%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||||| || |||||||| ||||||| || | ||| ||||||||||||| Sbjct: 960 catcagcaccaccggaggagttgagttggttgagcctttcaatgaggctggccttcctct 901 Query: 239 gctcgtaggtcagcttcttgggattgtacctcttgtgcgtctttggtggttccttggttg 298 |||| || |||||||||||||| ||||||||||| ||| ||||||||| | |||||||| Sbjct: 900 gctcatatgtcagcttcttggggttgtacctcttatgctcctttggtggctgcttggttg 841 Query: 299 attttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttcca 358 | || | || | |||||| ||||| ||||||||||| |||||||||||||| ||||| | Sbjct: 840 acttaacaatggaaggatcggcacggatggcagcatggaccttcttgtacagcgcttcta 781 Query: 359 taccatcagcctcgattcccttcttgatgtactcactgaagtgagattggtacttctcag 418 | |||||||||| | ||||||||| |||||| |||||||||| |||||||| || | Sbjct: 780 tttcatcagcctcaactcccttcttaatgtacgcactgaagtggctctggtacttttctg 721 Query: 419 gttcctcatcagccagtgacttcatgtagtcagcaacatgccctccatagatgtatttgc 478 | ||||| ||||| || ||||||||||||||||||||| || ||||||||||| ||| Sbjct: 720 gctcctcttcagcaaggttcttcatgtagtcagcaacatggccaccatagatgtacctgc 661 Query: 479 ggtgaatctcagcatccagctgcttctcatccttcttgaagccagcaaatctcttgtcac 538 |||| | |||||||||| |||||| || ||||||||||| |||||||| ||||| || | Sbjct: 660 ggtgggtatcagcatccaactgcttgtcgtccttcttgaatccagcaaacctcttctcgc 601 Query: 539 tgtgcggaatatcaagaccaccatccaa 566 |||| |||||||| || || |||||||| Sbjct: 600 tgtgaggaatatccaggcctccatccaa 573
>gb|AY106024.1| Zea mays PCO063168 mRNA sequence Length = 620 Score = 188 bits (95), Expect = 1e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 ||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||| Sbjct: 587 cccttcttgatgtactcgctgaagtgagcctggtacttctcgggctcctcatcagccaga 528 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 |||||| || ||||||||||| ||||||||||| ||||| || || ||||||||| Sbjct: 527 ttcttcatatactcagcaacatggagaccatagatgtacttgcgatggatatcagcatcc 468 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 |||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||| ||| Sbjct: 467 agctgcttatcatccttcttgaagccagcaaacctcttatcgctgtgaggaatatctaga 408 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 407 ccaccatccaa 397
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 291 cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 350 |||||||||||| || || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 38969192 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 38969133 Query: 351 tgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggta 410 ||||||||| |||||||| || ||||||||||||| ||||||||||||||| | |||| | Sbjct: 38969132 tgcttccatgccatcagcatcaattcccttcttgaggtactcactgaagtgggcttggaa 38969073 Query: 411 cttctcaggttcctc 425 |||||||||||||| Sbjct: 38969072 tttctcaggttcctc 38969058 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagct 499 ||||||||||||| || ||||| || |||||||| ||||||||||| |||| ||| |||| Sbjct: 38968843 tcatgtagtcagccacgtgcccaccgtagatgtacttgcggtgaatatcagaatcaagct 38968784 Query: 500 gcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccac 559 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct: 38968783 gcttctcgtccttcttgaacccagcaaacctcttgtcactgtgaggaatgtcaagaccac 38968724 Query: 560 catccaa 566 ||||||| Sbjct: 38968723 catccaa 38968717 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagct 499 ||||||||||||| || ||||| || |||||||| ||||||||||| |||| ||| |||| Sbjct: 38963525 tcatgtagtcagccacgtgcccaccgtagatgtacttgcggtgaatatcagaatcaagct 38963466 Query: 500 gcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccac 559 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct: 38963465 gcttctcgtccttcttgaacccagcaaacctcttgtcactgtgaggaatgtcaagaccac 38963406 Query: 560 catccaa 566 ||||||| Sbjct: 38963405 catccaa 38963399 Score = 133 bits (67), Expect = 7e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 291 cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 350 |||||| ||||| || || |||||||| || || ||||||||||| |||||||||||||| Sbjct: 38963860 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 38963801 Query: 351 tgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggta 410 || |||||| |||||||| || ||||||||||||| ||||||||| ||||| | |||| | Sbjct: 38963800 tgattccatgccatcagcgtcaattcccttcttgaggtactcactaaagtgggcttggaa 38963741 Query: 411 cttctcaggttcctcatcagcca 433 |||||||||||||| ||||||| Sbjct: 38963740 tttctcaggttcctcctcagcca 38963718 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| | || |||||||| ||||| | | || ||||||||||||||||||| Sbjct: 38964058 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 38963999 Query: 239 gctcgtaggtcagcttcttg 258 |||||||||||||||||||| Sbjct: 38963998 gctcgtaggtcagcttcttg 38963979 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| |||| |||||||| ||||| | | || || |||||||||||||||| Sbjct: 38969388 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 38969329 Query: 239 gctcgtaggtcagcttcttg 258 | |||||||| ||||||||| Sbjct: 38969328 gttcgtaggttagcttcttg 38969309
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 291 cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 350 |||||||||||| || || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 42825 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 42766 Query: 351 tgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggta 410 ||||||||| |||||||| || ||||||||||||| ||||||||||||||| | |||| | Sbjct: 42765 tgcttccatgccatcagcatcaattcccttcttgaggtactcactgaagtgggcttggaa 42706 Query: 411 cttctcaggttcctc 425 |||||||||||||| Sbjct: 42705 tttctcaggttcctc 42691 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagct 499 ||||||||||||| || ||||| || |||||||| ||||||||||| |||| ||| |||| Sbjct: 42476 tcatgtagtcagccacgtgcccaccgtagatgtacttgcggtgaatatcagaatcaagct 42417 Query: 500 gcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccac 559 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct: 42416 gcttctcgtccttcttgaacccagcaaacctcttgtcactgtgaggaatgtcaagaccac 42357 Query: 560 catccaa 566 ||||||| Sbjct: 42356 catccaa 42350 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagct 499 ||||||||||||| || ||||| || |||||||| ||||||||||| |||| ||| |||| Sbjct: 37158 tcatgtagtcagccacgtgcccaccgtagatgtacttgcggtgaatatcagaatcaagct 37099 Query: 500 gcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccac 559 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct: 37098 gcttctcgtccttcttgaacccagcaaacctcttgtcactgtgaggaatgtcaagaccac 37039 Query: 560 catccaa 566 ||||||| Sbjct: 37038 catccaa 37032 Score = 133 bits (67), Expect = 7e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 291 cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 350 |||||| ||||| || || |||||||| || || ||||||||||| |||||||||||||| Sbjct: 37493 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 37434 Query: 351 tgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggta 410 || |||||| |||||||| || ||||||||||||| ||||||||| ||||| | |||| | Sbjct: 37433 tgattccatgccatcagcgtcaattcccttcttgaggtactcactaaagtgggcttggaa 37374 Query: 411 cttctcaggttcctcatcagcca 433 |||||||||||||| ||||||| Sbjct: 37373 tttctcaggttcctcctcagcca 37351 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| | || |||||||| ||||| | | || ||||||||||||||||||| Sbjct: 37691 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 37632 Query: 239 gctcgtaggtcagcttcttg 258 |||||||||||||||||||| Sbjct: 37631 gctcgtaggtcagcttcttg 37612 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| |||| |||||||| ||||| | | || || |||||||||||||||| Sbjct: 43021 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 42962 Query: 239 gctcgtaggtcagcttcttg 258 | |||||||| ||||||||| Sbjct: 42961 gttcgtaggttagcttcttg 42942
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 291 cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 350 |||||||||||| || || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 133978 cttggttgatttggccatggtaggatcagcacggatggcagcatggaccttcttgtacag 133919 Query: 351 tgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggta 410 ||||||||| |||||||| || ||||||||||||| ||||||||||||||| | |||| | Sbjct: 133918 tgcttccatgccatcagcatcaattcccttcttgaggtactcactgaagtgggcttggaa 133859 Query: 411 cttctcaggttcctc 425 |||||||||||||| Sbjct: 133858 tttctcaggttcctc 133844 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagct 499 ||||||||||||| || ||||| || |||||||| ||||||||||| |||| ||| |||| Sbjct: 133629 tcatgtagtcagccacgtgcccaccgtagatgtacttgcggtgaatatcagaatcaagct 133570 Query: 500 gcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccac 559 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct: 133569 gcttctcgtccttcttgaacccagcaaacctcttgtcactgtgaggaatgtcaagaccac 133510 Query: 560 catccaa 566 ||||||| Sbjct: 133509 catccaa 133503 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagct 499 ||||||||||||| || ||||| || |||||||| ||||||||||| |||| ||| |||| Sbjct: 128311 tcatgtagtcagccacgtgcccaccgtagatgtacttgcggtgaatatcagaatcaagct 128252 Query: 500 gcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccac 559 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct: 128251 gcttctcgtccttcttgaacccagcaaacctcttgtcactgtgaggaatgtcaagaccac 128192 Query: 560 catccaa 566 ||||||| Sbjct: 128191 catccaa 128185 Score = 133 bits (67), Expect = 7e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 291 cttggttgattttgctattgtaggatcagcacgaatggcagcatgaaccttcttgtacag 350 |||||| ||||| || || |||||||| || || ||||||||||| |||||||||||||| Sbjct: 128646 cttggtcgatttggccatggtaggatcggcgcggatggcagcatggaccttcttgtacag 128587 Query: 351 tgcttccataccatcagcctcgattcccttcttgatgtactcactgaagtgagattggta 410 || |||||| |||||||| || ||||||||||||| ||||||||| ||||| | |||| | Sbjct: 128586 tgattccatgccatcagcgtcaattcccttcttgaggtactcactaaagtgggcttggaa 128527 Query: 411 cttctcaggttcctcatcagcca 433 |||||||||||||| ||||||| Sbjct: 128526 tttctcaggttcctcctcagcca 128504 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| | || |||||||| ||||| | | || ||||||||||||||||||| Sbjct: 128844 catcagcaccagcggaggagttgagagcattcaatctttcgacgagactggccttcctct 128785 Query: 239 gctcgtaggtcagcttcttg 258 |||||||||||||||||||| Sbjct: 128784 gctcgtaggtcagcttcttg 128765 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 179 catcagcaccaccagatgagttgagggcattgagccgctctacgagactggccttcctct 238 ||||||||||| |||| |||||||| ||||| | | || || |||||||||||||||| Sbjct: 134174 catcagcaccagcagaggagttgagagcattcaatctttcgacaagactggccttcctct 134115 Query: 239 gctcgtaggtcagcttcttg 258 | |||||||| ||||||||| Sbjct: 134114 gttcgtaggttagcttcttg 134095
>ref|NM_113448.2| Arabidopsis thaliana ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome AT3G25520 (ATL5) mRNA, complete cds Length = 1254 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 808 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 749 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 748 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 689 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 688 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 629 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 628 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 569 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 568 ccaccatccaa 558
>gb|BT000411.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA, complete cds Length = 969 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 687 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 686 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 627 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 626 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 567 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 566 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 507 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 506 ccaccatccaa 496
>gb|BT008705.1| Arabidopsis thaliana At3g25520 gene, complete cds Length = 906 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 687 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 686 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 627 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 626 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 567 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 566 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 507 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 506 ccaccatccaa 496
>gb|AY136319.1| Arabidopsis thaliana putative ribosomal protein (At3g25520) mRNA, complete cds Length = 1161 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 805 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 746 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 745 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 686 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 685 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 626 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 625 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 566 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 565 ccaccatccaa 555
>gb|AY065103.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA, complete cds Length = 1151 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 803 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 744 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 743 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 684 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 683 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 624 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 623 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 564 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 563 ccaccatccaa 553
>gb|AY081701.1| Arabidopsis thaliana 60S ribosomal protein L5 (At3g25550) mRNA, complete cds Length = 925 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 687 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 686 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 627 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 626 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 567 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 566 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 507 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 506 ccaccatccaa 496
>gb|AY054161.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds Length = 1108 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 793 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 734 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 733 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 674 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 673 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 614 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 613 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 554 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 553 ccaccatccaa 543
>gb|AY186611.1| Arabidopsis thaliana ribosomal protein L5 mRNA, complete cds Length = 906 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 746 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 687 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 686 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 627 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 626 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 567 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 566 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 507 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 506 ccaccatccaa 496
>emb|BX823967.1|CNS0A6W1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH10ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1076 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 778 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 719 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 718 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 659 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 658 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 599 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 598 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 539 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 538 ccaccatccaa 528
>gb|BT002427.1| Arabidopsis thaliana ribosomal protein, putative (At3g25520) mRNA, complete cds Length = 1117 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 803 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 744 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 743 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 684 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 683 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 624 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 623 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 564 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 563 ccaccatccaa 553
>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2 Length = 84896 Score = 93.7 bits (47), Expect = 6e-16 Identities = 200/251 (79%) Strand = Plus / Plus Query: 316 tcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgatt 375 ||||||||||| || || |||||||||||||||| | || || | ||||| || | | Sbjct: 56590 tcagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaact 56649 Query: 376 cccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagt 435 || ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 56650 cctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaac 56709 Query: 436 gacttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcc 495 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| Sbjct: 56710 agcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatca 56769 Query: 496 agctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaaga 555 || ||||| | ||||| | ||| ||||||||||||||||||||||| || ||||||||| Sbjct: 56770 agttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaaga 56829 Query: 556 ccaccatccaa 566 ||||||||||| Sbjct: 56830 ccaccatccaa 56840
>gb|AY087197.1| Arabidopsis thaliana clone 32753 mRNA, complete sequence Length = 1248 Score = 91.7 bits (46), Expect = 2e-15 Identities = 199/250 (79%) Strand = Plus / Minus Query: 317 cagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgattc 376 |||||||||| || || |||||||||||||||| | || || | ||||| || | || Sbjct: 807 cagcacgaatagctgcgtgaaccttcttgtacaactcctcaatgctctcagcttcaactc 748 Query: 377 ccttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagtg 436 | ||||||||||| |||||||||||| ||| ||||||| || || || || ||| Sbjct: 747 ctttcttgatgtaagcactgaagtgagtttgtaacttctctggctcatcttctcccaaca 688 Query: 437 acttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 ||||||||||| | ||||| || ||||||||||| || | ||| || |||||||| | Sbjct: 687 gcttcatgtagtttgagacatggccaccatagatgtagttcctgtggatttcagcatcaa 628 Query: 497 gctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagac 556 | ||||| | ||||| | ||| ||||||||||||||||||||||| || |||||||||| Sbjct: 627 gttgcttgttctccttgtggaacccagcaaatctcttgtcactgtgagggatatcaagac 568 Query: 557 caccatccaa 566 |||||||||| Sbjct: 567 caccatccaa 558
>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017, complete sequence Length = 121127 Score = 89.7 bits (45), Expect = 9e-15 Identities = 108/129 (83%) Strand = Plus / Plus Query: 438 cttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccag 497 |||||| ||| |||||||||| || ||| |||| ||||| ||||||| ||||| ||| || Sbjct: 46642 cttcatataggcagcaacatgtccaccaaagatatattttcggtgaacctcaggatcaag 46701 Query: 498 ctgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagacc 557 || |||| ||||||| |||||||||||||| || |||||||| |||||||| ||||| Sbjct: 46702 ctctttcttctccttctcaaagccagcaaatcttttatcactgtgaggaatatccagacc 46761 Query: 558 accatccaa 566 |||||||| Sbjct: 46762 cccatccaa 46770 Score = 48.1 bits (24), Expect = 0.032 Identities = 93/116 (80%) Strand = Plus / Plus Query: 307 attgtaggatcagcacgaatggcagcatgaaccttcttgtacagtgcttccataccatca 366 ||||| ||||| |||||||| |||||||| ||||| ||||| || | || | |||||| Sbjct: 46403 attgtgggatctgcacgaatagcagcatggacctttttgtatagatcctcaagtccatca 46462 Query: 367 gcctcgattcccttcttgatgtactcactgaagtgagattggtacttctcaggttc 422 ||||| || || |||||| || ||||||||||| || ||||| || |||||||| Sbjct: 46463 gcctctatcccgcgcttgatatattcactgaagtgtgactggtatttttcaggttc 46518
>dbj|AB049724.1| Pisum sativum ssa-15 mRNA for putative senescence-associated protein, complete cds Length = 1100 Score = 87.7 bits (44), Expect = 4e-14 Identities = 197/248 (79%) Strand = Plus / Minus Query: 319 gcacgaatggcagcatgaaccttcttgtacagtgcttccataccatcagcctcgattccc 378 |||||||| |||||||||||||||||||| ||| | || || |||||||| || || || Sbjct: 805 gcacgaattgcagcatgaaccttcttgtaaagttcctcaattccatcagcttctatccct 746 Query: 379 ttcttgatgtactcactgaagtgagattggtacttctcaggttcctcatcagccagtgac 438 |||||||| || | ||||||||||| ||| || || || || || || ||| || || | Sbjct: 745 ttcttgatatattgactgaagtgagtttgatatttttctggctcgtcttcaatcaatgtc 686 Query: 439 ttcatgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatccagc 498 ||||| ||| | | |||||| || ||| |||| || || | ||||| ||||||||| ||| Sbjct: 685 ttcatataggcggtaacatgtccaccaaagatatacttcctgtgaacctcagcatcaagc 626 Query: 499 tgcttctcatccttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagacca 558 | ||||| ||||| | || |||||||| || ||||||||||| |||||||| | ||| Sbjct: 625 tccttcttctccttgtcaaaaccagcaaaccttttgtcactgtgaggaatatccaaacct 566 Query: 559 ccatccaa 566 |||||||| Sbjct: 565 ccatccaa 558
>gb|AY365248.1| Cucumis sativus 60S ribosomal protein L5 mRNA, complete cds Length = 1171 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 362 catcagcctcgattcccttcttgatgtactcactgaagtgagattggtacttctcaggtt 421 |||| ||||| || ||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 721 catcggcctcaatgcccttcttgatgtactcgctgaagtgagattgatatttctcaggtt 662 Query: 422 c 422 | Sbjct: 661 c 661 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 |||||||| |||||||||||||| ||||| || | ||||||||||| Sbjct: 563 ccagcaaacctcttgtcactgtgaggaatgtccaatccaccatccaa 517
>gb|BT014015.1| Lycopersicon esculentum clone 133077F, mRNA sequence Length = 1274 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 451 gcaacatgccctccatagatgtatttgcggtgaatctcagcatccagctgcttctcatcc 510 |||||||| || ||||| || || |||||||||| ||||||||| || ||||| ||| Sbjct: 722 gcaacatggccaccatatatatacttgcggtgaacctcagcatcaagttgcttggaatct 663 Query: 511 ttcttgaagccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 || |||| |||||||| ||||| |||| || ||||||||||| ||||||||||| Sbjct: 662 ttgctgaatccagcaaacctcttctcaccatgaggaatatcaagtccaccatccaa 607 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 319 gcacgaatggcagcatgaaccttcttgtaca 349 ||||| ||||||||||||||||||||||||| Sbjct: 854 gcacgtatggcagcatgaaccttcttgtaca 824 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 247 gtcagcttcttgggattgtacctcttgtgcgtctt 281 ||||||||||| ||||||||||||||||| |||| Sbjct: 926 gtcagcttcttcagattgtacctcttgtgcttctt 892
>ref|NM_123336.3| Arabidopsis thaliana 5S rRNA binding / structural constituent of ribosome AT5G39740 mRNA, complete cds Length = 1223 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||||||||||||||||||||| || ||||||||||| || ||||| Sbjct: 584 ccagcaaatctcttgtcactgtgagggatatcaagacctccgtccaa 538
>gb|BT008706.1| Arabidopsis thaliana At5g39740 gene, complete cds Length = 906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||||||||||||||||||||| || ||||||||||| || ||||| Sbjct: 542 ccagcaaatctcttgtcactgtgagggatatcaagacctccgtccaa 496
>gb|AY093123.1| Arabidopsis thaliana ribosomal protein L5 - like (At5g39740) mRNA, complete cds Length = 1100 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||||||||||||||||||||| || ||||||||||| || ||||| Sbjct: 572 ccagcaaatctcttgtcactgtgagggatatcaagacctccgtccaa 526
>gb|AY079020.1| Arabidopsis thaliana AT5g39740/MKM21_30 mRNA, complete cds Length = 1128 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||||||||||||||||||||| || ||||||||||| || ||||| Sbjct: 584 ccagcaaatctcttgtcactgtgagggatatcaagacctccgtccaa 538
>emb|BX831866.1|CNS09ZT2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1048 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||||||||||||||||||||| || ||||||||||| || ||||| Sbjct: 561 ccagcaaatctcttgtcactgtgagggatatcaagacctccgtccaa 515
>dbj|AB016876.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21 Length = 44499 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 ||||||||||||||||||||||| || ||||||||||| || ||||| Sbjct: 8202 ccagcaaatctcttgtcactgtgagggatatcaagacctccgtccaa 8156
>emb|Z99296.2|SPAC3H5 S.pombe chromosome I cosmid c3H5 Length = 34284 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 441 catgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 |||||| ||||||||||| || |||||||| ||||||||| || ||||| |||||| Sbjct: 1285 catgtattcagcaacatggccaccatagatatatttgcggagagtctcatcatcca 1230
>ref|NM_001019604.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3H5.12c), partial mRNA Length = 885 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 441 catgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 |||||| ||||||||||| || |||||||| ||||||||| || ||||| |||||| Sbjct: 624 catgtattcagcaacatggccaccatagatatatttgcggagagtctcatcatcca 569
>gb|U48270.1|SPU48270 Schizosaccharomyces pombe ribosomal protein L5 gene, complete cds Length = 1238 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 441 catgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 |||||| ||||||||||| || |||||||| ||||||||| || ||||| |||||| Sbjct: 660 catgtattcagcaacatggccaccatagatatatttgcggagagtctcatcatcca 605
>emb|X95566.1|PS5SRNA P.sativum 5S rRNA gene Length = 1115 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 |||||||| |||||||||||||| |||||||| | ||| |||||||| Sbjct: 549 ccagcaaacctcttgtcactgtgaggaatatccaaacctccatccaa 503 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 319 gcacgaatggcagcatgaaccttcttgta 347 |||||||| |||||||||||||||||||| Sbjct: 758 gcacgaattgcagcatgaaccttcttgta 730
>gb|DQ228334.1| Solanum tuberosum clone 145F02 unknown mRNA Length = 1114 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 atggcagcatgaaccttcttgtaca 349 ||||||||||||||||||||||||| Sbjct: 771 atggcagcatgaaccttcttgtaca 747
>emb|BX832617.1|CNS09YMN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 520 ccagcaaatctcttgtcactgtgcggaatatcaagaccaccatccaa 566 |||||||||||||| ||||| || || ||||||||||| || ||||| Sbjct: 569 ccagcaaatctcttttcactttgagggatatcaagacctccgtccaa 523
>dbj|AK221847.1| Arabidopsis thaliana mRNA for ribosomal protein, complete cds, clone: RAFL22-05-O03 Length = 517 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Minus Query: 316 tcagcacgaatggcagcatgaaccttcttgtaca 349 ||||||||||| || || |||||||||||||||| Sbjct: 177 tcagcacgaatagctgcgtgaaccttcttgtaca 144
>dbj|AB001583.1| Solanum melongena mRNA for ribosomal protein L5, partial cds Length = 399 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Minus Query: 244 taggtcagcttcttgggattgtacctcttgtgcgtctt 281 |||||||||||||| | |||||||||||||| ||||| Sbjct: 276 taggtcagcttcttaaggttgtacctcttgtgtgtctt 239 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 325 atggcagcatgaaccttcttgtaca 349 |||||||| |||||||||||||||| Sbjct: 195 atggcagcgtgaaccttcttgtaca 171
>ref|XM_657651.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5139.2), mRNA Length = 3624 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 actctcattcatcgtcgtcttcatc 176 ||||||||||||| ||||||||||| Sbjct: 3164 actctcattcatcttcgtcttcatc 3188
>gb|BT012733.1| Lycopersicon esculentum clone 113662F, mRNA sequence Length = 1161 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 325 atggcagcatgaaccttcttgtaca 349 ||||||||||||||||| ||||||| Sbjct: 794 atggcagcatgaacctttttgtaca 770
>gb|AC161244.2| Mus musculus BAC clone RP24-393O16 from chromosome 13, complete sequence Length = 201429 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 ttctcatccttcttgaagcca 522 ||||||||||||||||||||| Sbjct: 56624 ttctcatccttcttgaagcca 56644
>gb|AC121916.3| Mus musculus BAC clone RP24-192K21 from chromosome 13, complete sequence Length = 157970 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 ttctcatccttcttgaagcca 522 ||||||||||||||||||||| Sbjct: 8327 ttctcatccttcttgaagcca 8307
>gb|AC109327.10| Homo sapiens chromosome 17, clone RP11-93C20, complete sequence Length = 113000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 cagccagtgacttcatgtagt 448 ||||||||||||||||||||| Sbjct: 55865 cagccagtgacttcatgtagt 55845
>gb|AC091515.9| Homo sapiens 12 BAC RP11-275O18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 37219 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 390 ctcactgaagtgagattggtacttctcag 418 |||| |||||||||| ||||||||||||| Sbjct: 11849 ctcattgaagtgagactggtacttctcag 11821
>emb|CT030195.12| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete sequence Length = 219800 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 actcaaaaccaagggggcagg 28 ||||||||||||||||||||| Sbjct: 138526 actcaaaaccaagggggcagg 138546
>emb|AJ005499.1|ASA005499 Avena strigosa pAs14 repetitive DNA sequence Length = 639 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 281 ttggtggttccttggttgattttgc 305 ||||||||||||||| ||||||||| Sbjct: 341 ttggtggttccttgggtgattttgc 317
>gb|M60100.1|HRSMHDRA E.caballus MHC class II DR alpha chain (A2 haplotype) gene, 3' end Length = 2006 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 ttcccttcttgatgtactcac 394 ||||||||||||||||||||| Sbjct: 906 ttcccttcttgatgtactcac 926
>ref|XM_638845.1| Dictyostelium discoideum hypothetical protein (DDB0217483), partial mRNA Length = 4395 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 tcatcgtcgtcttcatcgacatca 183 ||||| |||||||||||||||||| Sbjct: 1936 tcatcatcgtcttcatcgacatca 1959
>gb|AC091455.12| Mus musculus chromosome 1, clone RP23-23O9, complete sequence Length = 257924 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 gagactggccttcctctgct 241 |||||||||||||||||||| Sbjct: 17640 gagactggccttcctctgct 17621
>gb|AC153140.5| Mus musculus BAC clone RP23-340P19 from chromosome 12, complete sequence Length = 241834 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 484 atctcagcatccagctgcttctca 507 |||||||||||||||| ||||||| Sbjct: 77021 atctcagcatccagctacttctca 77044
>gb|AC006729.1| Caenorhabditis elegans cosmid Y24D9A, complete sequence Length = 41172 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 atccagctgcttctcatcct 511 |||||||||||||||||||| Sbjct: 4649 atccagctgcttctcatcct 4630
>gb|BC049636.1| Mus musculus mitchondrial ribosomal protein S7, mRNA (cDNA clone MGC:58388 IMAGE:6532964), complete cds Length = 1355 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aacttgagcaaaaatgcctctcac 73 ||||||||||||| |||||||||| Sbjct: 1121 aacttgagcaaaactgcctctcac 1144
>ref|NM_025305.1| Mus musculus mitchondrial ribosomal protein S7 (Mrps7), mRNA Length = 1355 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aacttgagcaaaaatgcctctcac 73 ||||||||||||| |||||||||| Sbjct: 1121 aacttgagcaaaactgcctctcac 1144
>gb|AC084159.2| Caenorhabditis elegans cosmid Y73B3A, complete sequence Length = 122855 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 atccagctgcttctcatcct 511 |||||||||||||||||||| Sbjct: 32141 atccagctgcttctcatcct 32160
>ref|XM_545753.2| PREDICTED: Canis familiaris similar to Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium pump 2) (Na+/K+ ATPase 2), transcript variant 1 (LOC488636), mRNA Length = 3039 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccttcctctgctcgtaggtc 249 |||||||||||||||||||| Sbjct: 2815 ccttcctctgctcgtaggtc 2796
>ref|XM_855596.1| PREDICTED: Canis familiaris similar to Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium pump 2) (Na+/K+ ATPase 2), transcript variant 2 (LOC488636), mRNA Length = 2949 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccttcctctgctcgtaggtc 249 |||||||||||||||||||| Sbjct: 2833 ccttcctctgctcgtaggtc 2814
>emb|Z81045.1|CEC36F7 Caenorhabditis elegans Cosmid C36F7, complete sequence Length = 39211 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 tcatcgtcgtcttcatcgacatca 183 |||||||||||||||||| ||||| Sbjct: 1300 tcatcgtcgtcttcatcgtcatca 1323
>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence Length = 161757 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tggttccttggttgattttg 304 |||||||||||||||||||| Sbjct: 134118 tggttccttggttgattttg 134137
>emb|Z49967.1|CEF54C9 Caenorhabditis elegans Cosmid F54C9, complete sequence Length = 34842 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgc 459 |||||||||||||||||||| Sbjct: 16526 tcatgtagtcagcaacatgc 16507
>gb|AF067621.2| Caenorhabditis elegans cosmid F55F10, complete sequence Length = 30835 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 atccagctgcttctcatcct 511 |||||||||||||||||||| Sbjct: 23284 atccagctgcttctcatcct 23265
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gttccttggttgattttgct 306 |||||||||||||||||||| Sbjct: 35316 gttccttggttgattttgct 35297
>emb|AL450304.33| Human DNA sequence from clone RP11-505O17 on chromosome 1 Contains the 5' end of a gene for a novel protein, a processed pseudogene similar to natural cytotoxicity triggering receptor 1 (NCR1), a processed pseudogene similar to keratin 18 (KRT18), the 5' end of the LAMC1 for laminin, gamma 1 (formerly LAMB2) and CpG island, complete sequence Length = 172837 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 caggttcctcatcagccagt 435 |||||||||||||||||||| Sbjct: 47197 caggttcctcatcagccagt 47216
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 attgagccgctctacgagac 226 |||||||||||||||||||| Sbjct: 4242294 attgagccgctctacgagac 4242313
>ref|XM_781978.1| PREDICTED: Strongylocentrotus purpuratus similar to DNA topoisomerase II, alpha isozyme (LOC582001), mRNA Length = 3024 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gctgcttctcatccttcttg 516 |||||||||||||||||||| Sbjct: 2233 gctgcttctcatccttcttg 2214
>gb|AC130456.2| Homo sapiens chromosome 16 clone CTA-363E6, complete sequence Length = 220579 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aagcatgaagacagcactat 133 |||||||||||||||||||| Sbjct: 133716 aagcatgaagacagcactat 133697
>gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, complete sequence Length = 230597 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gagactggccttcctctgct 241 |||||||||||||||||||| Sbjct: 56125 gagactggccttcctctgct 56144
>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence Length = 203937 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tggttccttggttgattttg 304 |||||||||||||||||||| Sbjct: 33502 tggttccttggttgattttg 33521
>emb|AL031528.1|SPBC11C11 S.pombe chromosome II cosmid c11C11 Length = 22500 Score = 40.1 bits (20), Expect = 7.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 441 catgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 |||||| ||||||||||| || |||||||| || || ||| || ||||| |||||| Sbjct: 20215 catgtattcagcaacatgaccaccatagatatacttacggagagtctcatcatcca 20270
>dbj|AK126270.1| Homo sapiens cDNA FLJ44282 fis, clone TRACH2003516 Length = 2555 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aagcatgaagacagcactat 133 |||||||||||||||||||| Sbjct: 1586 aagcatgaagacagcactat 1567
>gb|AC084750.3| Homo sapiens BAC clone RP11-215J17 from 4, complete sequence Length = 154693 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 503 tctcatccttcttgaagccagcaa 526 |||||||| ||||||||||||||| Sbjct: 112958 tctcatccctcttgaagccagcaa 112981
>dbj|AK162024.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820413L12 product:mitchondrial ribosomal protein S7, full insert sequence Length = 1715 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aacttgagcaaaaatgcctctcac 73 ||||||||||||| |||||||||| Sbjct: 1100 aacttgagcaaaactgcctctcac 1123
>gb|AC160128.2| Mus musculus BAC clone RP23-286G17 from chromosome 12, complete sequence Length = 202315 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 ctgaagtgagattggtactt 413 |||||||||||||||||||| Sbjct: 167993 ctgaagtgagattggtactt 168012
>dbj|AK009251.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310009G03 product:mitchondrial ribosomal protein S7, full insert sequence Length = 1288 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 aacttgagcaaaaatgcctctcac 73 ||||||||||||| |||||||||| Sbjct: 1086 aacttgagcaaaactgcctctcac 1109
>ref|NM_001022319.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC11C11.09c), partial mRNA Length = 885 Score = 40.1 bits (20), Expect = 7.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 441 catgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 |||||| ||||||||||| || |||||||| || || ||| || ||||| |||||| Sbjct: 624 catgtattcagcaacatgaccaccatagatatacttacggagagtctcatcatcca 569
>ref|NR_002685.1| Caenorhabditis elegans strain Bristol N2 chromosome X Length = 2199 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 atccagctgcttctcatcct 511 |||||||||||||||||||| Sbjct: 1001 atccagctgcttctcatcct 1020
>ref|NM_068150.3| Caenorhabditis elegans F55F10.1 (F55F10.1) mRNA, complete cds Length = 13378 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 atccagctgcttctcatcct 511 |||||||||||||||||||| Sbjct: 11151 atccagctgcttctcatcct 11132
>dbj|AK034688.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430024N04 product:unclassifiable, full insert sequence Length = 2042 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tggttccttggttgattttg 304 |||||||||||||||||||| Sbjct: 1763 tggttccttggttgattttg 1744
>ref|NM_063410.2| Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-5) (rpl-5) mRNA, complete cds Length = 969 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tcatgtagtcagcaacatgc 459 |||||||||||||||||||| Sbjct: 630 tcatgtagtcagcaacatgc 611
>ref|NM_060132.2| Caenorhabditis elegans IRoquois subclass of homeoboX family member (irx-1) (irx-1) mRNA, complete cds Length = 1150 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 tcatcgtcgtcttcatcgacatca 183 |||||||||||||||||| ||||| Sbjct: 675 tcatcgtcgtcttcatcgtcatca 652
>ref|NM_178099.2| Danio rerio ATPase, Na+/K+ transporting, alpha 1a.5 polypeptide (atp1a1a.5), mRNA Length = 3838 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccttcctctgctcgtaggtc 249 |||||||||||||||||||| Sbjct: 2810 ccttcctctgctcgtaggtc 2791
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 tcatcgtcgtcttcatcgacatca 183 ||||| |||||||||||||||||| Sbjct: 171756 tcatcatcgtcttcatcgacatca 171779
>gb|AC084452.1|AC084452 Caenorhabditis briggsae cosmid CB024D21, complete sequence Length = 93590 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgtcgtcttcatcgacatca 183 |||||||||||||||||||| Sbjct: 76007 cgtcgtcttcatcgacatca 76026
>gb|AY094620.1| Danio rerio Na+/K+ ATPase alpha subunit isoform 9 (atp1a1a.5) mRNA, complete cds Length = 3838 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccttcctctgctcgtaggtc 249 |||||||||||||||||||| Sbjct: 2810 ccttcctctgctcgtaggtc 2791
>gb|U91321.1|HUU91321 Human Chromosome 16 BAC clone CIT987SK-A-363E6, complete sequence Length = 220633 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aagcatgaagacagcactat 133 |||||||||||||||||||| Sbjct: 133766 aagcatgaagacagcactat 133747
>gb|AC155808.2| Mus musculus BAC clone RP24-267H3 from 12, complete sequence Length = 184888 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ctgaagtgagattggtactt 413 |||||||||||||||||||| Sbjct: 130083 ctgaagtgagattggtactt 130064
>gb|AF051242.1|AF051242 Picea mariana probable 60S ribosomal protein L5 (Sb58) mRNA, partial cds Length = 556 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 322 cgaatggcagcatgaaccttcttgtaca 349 |||||||||||||| || |||||||||| Sbjct: 118 cgaatggcagcatgcactttcttgtaca 91
>emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on chromosome 11, complete sequence Length = 198031 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 aacttgagcaaaaatgcctctcac 73 ||||||||||||| |||||||||| Sbjct: 17403 aacttgagcaaaactgcctctcac 17380
>dbj|AB016045.1| Schizosaccharomyces pombe mRNA for ribosomal protein L5 homolog, partial cds Length = 779 Score = 40.1 bits (20), Expect = 7.7 Identities = 47/56 (83%) Strand = Plus / Minus Query: 441 catgtagtcagcaacatgccctccatagatgtatttgcggtgaatctcagcatcca 496 |||||| ||||||||||| || |||||||| || || ||| || ||||| |||||| Sbjct: 486 catgtattcagcaacatgaccaccatagatatacttacggagagtctcatcatcca 431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,796,013 Number of Sequences: 3902068 Number of extensions: 4796013 Number of successful extensions: 95774 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95484 Number of HSP's gapped (non-prelim): 268 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
