ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
2dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
3dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
4dbj|AK068750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 3e-52
5dbj|AK099542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
6emb|BX323873.9| Zebrafish DNA sequence from clone CH211-133L21 i... 42 2.2
7gb|AC153610.3| Mus musculus 6 BAC RP23-271E2 (Roswell Park Cance... 42 2.2
8gb|AC153995.2| Mus musculus 6 BAC RP24-534C23 (Roswell Park Canc... 42 2.2
9gb|AC158966.5| Mus musculus chromosome 1, clone RP23-382I8, comp... 40 8.8
10gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene ... 40 8.8
11gb|AY518539.1| Homo sapiens insulin-like growth factor binding p... 40 8.8
12emb|Z98946.15|HS376D21 Human DNA sequence from clone RP3-376D21 ... 40 8.8
13gb|AC072041.21| Homo sapiens 3 BAC RP11-450A18 (Roswell Park Can... 40 8.8
14gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, comple... 40 8.8
15gb|AC157993.7| Mus musculus chromosome 1, clone RP23-74E8, compl... 40 8.8
16gb|AC101696.14| Mus musculus chromosome 1, clone RP23-238M18, co... 40 8.8
17dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 8.8
18gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, com... 40 8.8
19emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encepha... 40 8.8

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  222 bits (112), Expect = 1e-54
 Identities = 208/240 (86%)
 Strand = Plus / Minus

                                                                            
Query: 323      ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382
                |||||| ||||||||||| ||||||||||| |||||||  |  |||| ||| || |||||
Sbjct: 25622925 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 25622866

                                                                            
Query: 383      gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442
                |||||||||||||| ||| || ||||||||||  || |||||||| ||||| ||||||||
Sbjct: 25622865 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 25622806

                                                                            
Query: 443      atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502
                |||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 25622805 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 25622746

                                                                            
Query: 503      cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562
                |||||| |||||||| || || |||||||| ||||| ||||| || ||| | ||||||||
Sbjct: 25622745 cacctcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 25622686



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>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0523F01
          Length = 146419

 Score =  222 bits (112), Expect = 1e-54
 Identities = 208/240 (86%)
 Strand = Plus / Minus

                                                                          
Query: 323    ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382
              |||||| ||||||||||| ||||||||||| |||||||  |  |||| ||| || |||||
Sbjct: 141242 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 141183

                                                                          
Query: 383    gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442
              |||||||||||||| ||| || ||||||||||  || |||||||| ||||| ||||||||
Sbjct: 141182 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 141123

                                                                          
Query: 443    atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502
              |||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 141122 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 141063

                                                                          
Query: 503    cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562
              |||||| |||||||| || || |||||||| ||||| ||||| || ||| | ||||||||
Sbjct: 141062 cacctcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 141003



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>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0458E02
          Length = 154458

 Score =  222 bits (112), Expect = 1e-54
 Identities = 208/240 (86%)
 Strand = Plus / Minus

                                                                         
Query: 323   ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382
             |||||| ||||||||||| ||||||||||| |||||||  |  |||| ||| || |||||
Sbjct: 46370 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 46311

                                                                         
Query: 383   gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442
             |||||||||||||| ||| || ||||||||||  || |||||||| ||||| ||||||||
Sbjct: 46310 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 46251

                                                                         
Query: 443   atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502
             |||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 46250 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 46191

                                                                         
Query: 503   cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562
             |||||| |||||||| || || |||||||| ||||| ||||| || ||| | ||||||||
Sbjct: 46190 cacctcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 46131



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>dbj|AK068750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J24, full
            insert sequence
          Length = 2513

 Score =  214 bits (108), Expect = 3e-52
 Identities = 207/240 (86%)
 Strand = Plus / Minus

                                                                        
Query: 323  ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382
            |||||| ||||||||||| ||||||||||| |||||||  |  |||| ||| || |||||
Sbjct: 2030 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 1971

                                                                        
Query: 383  gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442
            |||||||||||||| ||| || ||||||||||  || |||||||| ||||| ||||||||
Sbjct: 1970 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 1911

                                                                        
Query: 443  atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502
            |||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1910 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 1851

                                                                        
Query: 503  cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562
            || ||| |||||||| || || |||||||| ||||| ||||| || ||| | ||||||||
Sbjct: 1850 caactcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 1791



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>dbj|AK099542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032K11, full
           insert sequence
          Length = 816

 Score =  105 bits (53), Expect = 2e-19
 Identities = 92/105 (87%)
 Strand = Plus / Plus

                                                                       
Query: 458 gtgcccgtacttcttcacgaccccctcacacttgtcgaagctcaccacctccacctcaga 517
           |||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 1   gtgctcgtacttcttcacgatcccctcacacttgtcaaagctcaccacctcaacctcaga 60

                                                        
Query: 518 agggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562
            || || |||||||| ||||| ||||| || ||| | ||||||||
Sbjct: 61  gggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 105



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>emb|BX323873.9| Zebrafish DNA sequence from clone CH211-133L21 in linkage group 19,
             complete sequence
          Length = 186708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 619   caaacaccccacctctctttc 639
             |||||||||||||||||||||
Sbjct: 62997 caaacaccccacctctctttc 62977



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>gb|AC153610.3| Mus musculus 6 BAC RP23-271E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177392

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    gacacatatttacaaggttta 101
             |||||||||||||||||||||
Sbjct: 15214 gacacatatttacaaggttta 15234



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>gb|AC153995.2| Mus musculus 6 BAC RP24-534C23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 151475

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     gacacatatttacaaggttta 101
              |||||||||||||||||||||
Sbjct: 116750 gacacatatttacaaggttta 116770



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>gb|AC158966.5| Mus musculus chromosome 1, clone RP23-382I8, complete sequence
          Length = 183519

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 68    aggtgcaaagatagacacatatttacaa 95
             |||||||||||| |||||| ||||||||
Sbjct: 91031 aggtgcaaagatcgacacacatttacaa 91058



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>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete
             sequence
          Length = 99318

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   gactccttggccttgtgatg 368
             ||||||||||||||||||||
Sbjct: 92270 gactccttggccttgtgatg 92289



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   gactccttggccttgtgatg 368
             ||||||||||||||||||||
Sbjct: 92108 gactccttggccttgtgatg 92127



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>gb|AY518539.1| Homo sapiens insulin-like growth factor binding protein 7 (IGFBP7)
             gene, complete cds
          Length = 82343

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ggtgcaaagatagacacata 88
             ||||||||||||||||||||
Sbjct: 67647 ggtgcaaagatagacacata 67666



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>emb|Z98946.15|HS376D21 Human DNA sequence from clone RP3-376D21 on chromosome Xq11.1-12 Contains
              the MSN gene for Moesin and a CpG island, complete sequence
          Length = 149671

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    acaaagatgcctagcttcat 397
              ||||||||||||||||||||
Sbjct: 134508 acaaagatgcctagcttcat 134527



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>gb|AC072041.21| Homo sapiens 3 BAC RP11-450A18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 111809

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ggtgcaaagatagacacata 88
             ||||||||||||||||||||
Sbjct: 26148 ggtgcaaagatagacacata 26129



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>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     ggtgcaaagatagacacata 88
              ||||||||||||||||||||
Sbjct: 158592 ggtgcaaagatagacacata 158573



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>gb|AC157993.7| Mus musculus chromosome 1, clone RP23-74E8, complete sequence
          Length = 157271

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    atgtagttgcatacttctag 62
             ||||||||||||||||||||
Sbjct: 64180 atgtagttgcatacttctag 64161



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>gb|AC101696.14| Mus musculus chromosome 1, clone RP23-238M18, complete sequence
          Length = 162270

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 68    aggtgcaaagatagacacatatttacaa 95
             |||||||||||| |||||| ||||||||
Sbjct: 20399 aggtgcaaagatcgacacacatttacaa 20426



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 519     gggtcggccaagcagctgca 538
               ||||||||||||||||||||
Sbjct: 2272388 gggtcggccaagcagctgca 2272369



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>gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, complete sequence
          Length = 189918

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    atgtagttgcatacttctag 62
             ||||||||||||||||||||
Sbjct: 22996 atgtagttgcatacttctag 23015



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>emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 220294

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ctccatccaacattgctttt 199
              ||||||||||||||||||||
Sbjct: 157514 ctccatccaacattgctttt 157533


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,223,004
Number of Sequences: 3902068
Number of extensions: 5223004
Number of successful extensions: 98720
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98635
Number of HSP's gapped (non-prelim): 83
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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