| Clone Name | rbags37d18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 222 bits (112), Expect = 1e-54 Identities = 208/240 (86%) Strand = Plus / Minus Query: 323 ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382 |||||| ||||||||||| ||||||||||| ||||||| | |||| ||| || ||||| Sbjct: 25622925 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 25622866 Query: 383 gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442 |||||||||||||| ||| || |||||||||| || |||||||| ||||| |||||||| Sbjct: 25622865 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 25622806 Query: 443 atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502 |||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||| Sbjct: 25622805 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 25622746 Query: 503 cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562 |||||| |||||||| || || |||||||| ||||| ||||| || ||| | |||||||| Sbjct: 25622745 cacctcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 25622686
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 222 bits (112), Expect = 1e-54 Identities = 208/240 (86%) Strand = Plus / Minus Query: 323 ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382 |||||| ||||||||||| ||||||||||| ||||||| | |||| ||| || ||||| Sbjct: 141242 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 141183 Query: 383 gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442 |||||||||||||| ||| || |||||||||| || |||||||| ||||| |||||||| Sbjct: 141182 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 141123 Query: 443 atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502 |||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||| Sbjct: 141122 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 141063 Query: 503 cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562 |||||| |||||||| || || |||||||| ||||| ||||| || ||| | |||||||| Sbjct: 141062 cacctcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 141003
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 222 bits (112), Expect = 1e-54 Identities = 208/240 (86%) Strand = Plus / Minus Query: 323 ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382 |||||| ||||||||||| ||||||||||| ||||||| | |||| ||| || ||||| Sbjct: 46370 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 46311 Query: 383 gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442 |||||||||||||| ||| || |||||||||| || |||||||| ||||| |||||||| Sbjct: 46310 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 46251 Query: 443 atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502 |||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||| Sbjct: 46250 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 46191 Query: 503 cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562 |||||| |||||||| || || |||||||| ||||| ||||| || ||| | |||||||| Sbjct: 46190 cacctcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 46131
>dbj|AK068750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J24, full insert sequence Length = 2513 Score = 214 bits (108), Expect = 3e-52 Identities = 207/240 (86%) Strand = Plus / Minus Query: 323 ctgatcggagacgctggcgacctttcgactccttggccttgtgatgctcttgccgacaaa 382 |||||| ||||||||||| ||||||||||| ||||||| | |||| ||| || ||||| Sbjct: 2030 ctgatcagagacgctggcaacctttcgacttcttggccgagcaatgcccttcccaacaaa 1971 Query: 383 gatgcctagcttcatagcagtaaagaaacctatggcgatgaacagaggcctcaccgccca 442 |||||||||||||| ||| || |||||||||| || |||||||| ||||| |||||||| Sbjct: 1970 gatgcctagcttcagagcggtgaagaaacctacagcaatgaacagcggcctgaccgccca 1911 Query: 443 atggaagtcctcgaggtgcccgtacttcttcacgaccccctcacacttgtcgaagctcac 502 |||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||| Sbjct: 1910 atggaaatcctcgaggtgctcgtacttcttcacgatcccctcacacttgtcaaagctcac 1851 Query: 503 cacctccacctcagaagggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562 || ||| |||||||| || || |||||||| ||||| ||||| || ||| | |||||||| Sbjct: 1850 caactcaacctcagagggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 1791
>dbj|AK099542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032K11, full insert sequence Length = 816 Score = 105 bits (53), Expect = 2e-19 Identities = 92/105 (87%) Strand = Plus / Plus Query: 458 gtgcccgtacttcttcacgaccccctcacacttgtcgaagctcaccacctccacctcaga 517 |||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| Sbjct: 1 gtgctcgtacttcttcacgatcccctcacacttgtcaaagctcaccacctcaacctcaga 60 Query: 518 agggtcggccaagcagctgcacacttcgccgaggctgaatttgcc 562 || || |||||||| ||||| ||||| || ||| | |||||||| Sbjct: 61 gggatctgccaagcaactgcatacttcaccaaggttaaatttgcc 105
>emb|BX323873.9| Zebrafish DNA sequence from clone CH211-133L21 in linkage group 19, complete sequence Length = 186708 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 caaacaccccacctctctttc 639 ||||||||||||||||||||| Sbjct: 62997 caaacaccccacctctctttc 62977
>gb|AC153610.3| Mus musculus 6 BAC RP23-271E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 177392 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gacacatatttacaaggttta 101 ||||||||||||||||||||| Sbjct: 15214 gacacatatttacaaggttta 15234
>gb|AC153995.2| Mus musculus 6 BAC RP24-534C23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151475 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gacacatatttacaaggttta 101 ||||||||||||||||||||| Sbjct: 116750 gacacatatttacaaggttta 116770
>gb|AC158966.5| Mus musculus chromosome 1, clone RP23-382I8, complete sequence Length = 183519 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 aggtgcaaagatagacacatatttacaa 95 |||||||||||| |||||| |||||||| Sbjct: 91031 aggtgcaaagatcgacacacatttacaa 91058
>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete sequence Length = 99318 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 gactccttggccttgtgatg 368 |||||||||||||||||||| Sbjct: 92270 gactccttggccttgtgatg 92289 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 gactccttggccttgtgatg 368 |||||||||||||||||||| Sbjct: 92108 gactccttggccttgtgatg 92127
>gb|AY518539.1| Homo sapiens insulin-like growth factor binding protein 7 (IGFBP7) gene, complete cds Length = 82343 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggtgcaaagatagacacata 88 |||||||||||||||||||| Sbjct: 67647 ggtgcaaagatagacacata 67666
>emb|Z98946.15|HS376D21 Human DNA sequence from clone RP3-376D21 on chromosome Xq11.1-12 Contains the MSN gene for Moesin and a CpG island, complete sequence Length = 149671 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 acaaagatgcctagcttcat 397 |||||||||||||||||||| Sbjct: 134508 acaaagatgcctagcttcat 134527
>gb|AC072041.21| Homo sapiens 3 BAC RP11-450A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111809 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggtgcaaagatagacacata 88 |||||||||||||||||||| Sbjct: 26148 ggtgcaaagatagacacata 26129
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggtgcaaagatagacacata 88 |||||||||||||||||||| Sbjct: 158592 ggtgcaaagatagacacata 158573
>gb|AC157993.7| Mus musculus chromosome 1, clone RP23-74E8, complete sequence Length = 157271 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 atgtagttgcatacttctag 62 |||||||||||||||||||| Sbjct: 64180 atgtagttgcatacttctag 64161
>gb|AC101696.14| Mus musculus chromosome 1, clone RP23-238M18, complete sequence Length = 162270 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 aggtgcaaagatagacacatatttacaa 95 |||||||||||| |||||| |||||||| Sbjct: 20399 aggtgcaaagatcgacacacatttacaa 20426
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 gggtcggccaagcagctgca 538 |||||||||||||||||||| Sbjct: 2272388 gggtcggccaagcagctgca 2272369
>gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, complete sequence Length = 189918 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 atgtagttgcatacttctag 62 |||||||||||||||||||| Sbjct: 22996 atgtagttgcatacttctag 23015
>emb|AL590446.1|CNS07EGD chromosome VI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 220294 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ctccatccaacattgctttt 199 |||||||||||||||||||| Sbjct: 157514 ctccatccaacattgctttt 157533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,223,004 Number of Sequences: 3902068 Number of extensions: 5223004 Number of successful extensions: 98720 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98635 Number of HSP's gapped (non-prelim): 83 length of query: 645 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 622 effective length of database: 17,143,297,704 effective search space: 10663131171888 effective search space used: 10663131171888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)