>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 44/126 (34%), Positives = 66/126 (52%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C +H +Q RGM+ ++DVR QL +++ +            GRK +     + RALC GY  
Sbjct: 1008 CYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSC----GRKRE----LILRALCSGYFT 1059

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
             +A+R  H   Y T+      V +HPS VL    +GK   +V+YHELI T++ +M  V  
Sbjct: 1060 NVAKRDSHEGCYKTI-VENAPVYMHPSGVL----FGKAAEWVIYHELIQTSKEYMHTVST 1114

Query: 361  VEQTWV 344
            V   W+
Sbjct: 1115 VNPKWL 1120

>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent
            RNA helicase #3)
          Length = 1041

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 41/126 (32%), Positives = 72/126 (57%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C ++ +Q R M+ ++DVR QL  +++++  G +  Q         DY ++R+A+  GY  
Sbjct: 898  CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQG--------DYIRVRKAITAGYFY 949

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
              A   +  +GY TV  + Q V +HP+S L    + + P +++YHEL+ TT+ FMR V  
Sbjct: 950  HTAR--LTRSGYRTVKQQ-QTVFIHPNSSL----FEQQPRWLLYHELVLTTKEFMRQVLE 1002

Query: 361  VEQTWV 344
            +E +W+
Sbjct: 1003 IESSWL 1008

>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase|
            DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent
            RNA helicase #3)
          Length = 1044

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 41/126 (32%), Positives = 72/126 (57%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C ++ +Q R M+ ++DVR QL  +++++  G +  Q         DY ++R+A+  GY  
Sbjct: 901  CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQG--------DYIRVRKAITAGYFY 952

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
              A   +  +GY TV  + Q V +HP+S L    + + P +++YHEL+ TT+ FMR V  
Sbjct: 953  HTAR--LTRSGYRTVKQQ-QTVFIHPNSSL----FEQQPRWLLYHELVLTTKEFMRQVLE 1005

Query: 361  VEQTWV 344
            +E +W+
Sbjct: 1006 IESSWL 1011

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-5 (EC 3.6.1.-) (Sex determination protein mog-5)
            (Masculinization of germ line protein 5)
          Length = 1200

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C ++ +QVR MK ++D+R QL  I+ +       L    GR    D  ++++A+C G+  
Sbjct: 1037 CFENFIQVRSMKRAQDIRKQLLGIMDRHKL----LMVSCGR----DVSRVQKAICSGFFR 1088

Query: 541  QLAERMIHHNGYHTVGYRT----QLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMR 374
              A+R          GYRT    Q V +HPSS      + + P +VVYHEL+ TT+ +MR
Sbjct: 1089 NAAKRDPQE------GYRTLTDGQNVYIHPSSAC----FQQQPEWVVYHELVMTTKEYMR 1138

Query: 373  NVCGVEQTWV 344
             V  ++  W+
Sbjct: 1139 EVTAIDPKWL 1148

>DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase F56D2.6 (EC 3.6.1.-)
          Length = 739

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQK--IAKGPTDLQARRGRKSDPDYRKLRRALCVGY 548
           C D+ +  R MK +  VR QLS+++ K  + +  TD ++R        Y  +R+AL  G+
Sbjct: 588 CYDNFINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSR------DYYLNIRKALVAGF 641

Query: 547 GNQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNV 368
             Q+A   +  +G++      QLV +HPS+VL+       P + +Y+E + TT+ F+R V
Sbjct: 642 FMQVAH--LERSGHYVTVKDNQLVNLHPSTVLDHK-----PEWALYNEFVLTTKNFIRTV 694

Query: 367 CGVEQTWV 344
             V   W+
Sbjct: 695 TDVRPEWL 702

>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22|
            (EC 3.6.1.-)
          Length = 1145

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 42/126 (33%), Positives = 64/126 (50%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C  + L  R +K ++DV++Q+S I +KI              SDPD   +R+    G+  
Sbjct: 980  CKTNFLHFRHLKRARDVKSQISMIFKKIGLKLISCH------SDPDL--IRKTFVSGFFM 1031

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
              A+R     GY T+   T+ V +HPSS L G EY     YV+YH ++ T+R +M  V  
Sbjct: 1032 NAAKRD-SQVGYKTINGGTE-VGIHPSSSLYGKEYE----YVMYHSIVLTSREYMSQVTS 1085

Query: 361  VEQTWV 344
            +E  W+
Sbjct: 1086 IEPQWL 1091

>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-)
          Length = 1071

 Score = 60.1 bits (144), Expect = 7e-09
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C+ H +Q + +  ++D+R+QL  I+ K  K P          S  D+  +++ +C G+ +
Sbjct: 862  CNKHFVQYKSLVRARDIRDQLLTIL-KSQKIPVI-------SSGKDWDIIKKCICSGFAH 913

Query: 541  QLAERMIHHNGYHTVGYRTQL-VQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVC 365
            Q A+     N  H    +T + VQ+HP+S L G   G LP YVVYHEL+ T++ ++  V 
Sbjct: 914  QAAKITGLRNYVHL---KTGVSVQLHPTSALHG--LGDLPPYVVYHELLMTSKEYICCVT 968

Query: 364  GVEQTWV 344
             V+  W+
Sbjct: 969  SVDPFWL 975

>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQK--IAKGPTDLQARRGRKSDPDYRKLRRALCVGY 548
           C D+ +  R +  + +VR QLS+I+ +  + +  TD  +R        Y  +R+AL  GY
Sbjct: 644 CYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSR------DYYINIRKALVTGY 697

Query: 547 GNQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNV 368
             Q+A   +   G++      Q+VQ+HPS+VL+       P +V+Y+E + TT+ ++R  
Sbjct: 698 FMQVAH--LERTGHYLTVKDNQVVQLHPSTVLDHK-----PEWVLYNEFVLTTKNYIRTC 750

Query: 367 CGVEQTWV 344
             ++  W+
Sbjct: 751 TDIKPEWL 758

>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQK--IAKGPTDLQARRGRKSDPDYRKLRRALCVGY 548
           C D+ +  R +  + +VR QLS+I+ +  + +  TD  +R        Y  +R+AL  GY
Sbjct: 644 CYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSR------DYYINIRKALVTGY 697

Query: 547 GNQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNV 368
             Q+A   +   G++      Q+VQ+HPS+VL+       P +V+Y+E + TT+ ++R  
Sbjct: 698 FMQVAH--LERTGHYLTVKDNQVVQLHPSTVLDHK-----PEWVLYNEFVLTTKNYIRTC 750

Query: 367 CGVEQTWV 344
             ++  W+
Sbjct: 751 TDIKPEWL 758

>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            (EC 3.6.1.-)
          Length = 1168

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 37/126 (29%), Positives = 65/126 (51%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C ++ +Q R ++ ++DVR QL  I+ K               +  ++ K+R+A+  G+  
Sbjct: 1012 CFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVT--------AGKNFTKIRKAITAGFFF 1063

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
              A R     GY T+    Q V +HPSS L    + + P +V+YH+L+ TT+ +MR V  
Sbjct: 1064 HGA-RKDPQEGYRTL-VENQPVYIHPSSAL----FQRQPDWVIYHDLVMTTKEYMREVTV 1117

Query: 361  VEQTWV 344
            ++  W+
Sbjct: 1118 IDPKWL 1123

>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
            protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 37/126 (29%), Positives = 68/126 (53%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C ++ +Q R ++ ++D+R Q+  I+ +       L      KS     ++++A+C G+  
Sbjct: 1062 CYENFIQARSLRRAQDIRKQMLGIMDR-----HKLDVVSCGKSTV---RVQKAICSGFFR 1113

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
              A++     GY T+    Q+V +HPSS L    + + P +VVYHEL+ TT+ +MR V  
Sbjct: 1114 NAAKKD-PQEGYRTL-IDQQVVYIHPSSAL----FNRQPEWVVYHELVLTTKEYMREVTT 1167

Query: 361  VEQTWV 344
            ++  W+
Sbjct: 1168 IDPRWL 1173

>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box
            protein 38)
          Length = 1227

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 6/197 (3%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKS-DPDYRKLRRALCVGYG 545
            C+DH +  + M+  ++VR QL  I+         +Q R    S   D+  +R+ +C  Y 
Sbjct: 1028 CNDHFIHAKAMRKVREVRAQLKDIM---------VQQRMSLASCGTDWDIVRKCICAAYF 1078

Query: 544  NQLAERMIHHNGYHTVGYRTQL-VQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNV 368
            +Q A+  +   G + V  RT +   +HP+S L G   G  P Y+VYHEL+ TT+ +M+ V
Sbjct: 1079 HQAAK--LKGIGEY-VNIRTGMPCHLHPTSSLFG--MGYTPDYIVYHELVMTTKEYMQCV 1133

Query: 367  CGVEQTWVK---PXXXXXXXXXXXXLSGGSSALTDSESLEEKQPGSPTKAAAAKQ-SDVD 200
              V+  W+    P                  A  ++ ++EE+   +  +  A +Q  +  
Sbjct: 1134 TAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKR 1193

Query: 199  SKIQAARERYLARKGKK 149
            S + + R   +   G+K
Sbjct: 1194 SPLGSVRSTKIYTPGRK 1210

>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-4 (EC 3.6.1.-) (Sex determination protein mog-4)
            (Masculinization of germ line protein 4)
          Length = 1008

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 35/126 (27%), Positives = 69/126 (54%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C ++ +Q R MK ++DVR+QL  +++++     +++     KS  D  K+R+A+  GY  
Sbjct: 864  CVENYVQHRTMKRARDVRDQLVGLLERV-----EIET----KSSTDTIKIRKAITAGYFY 914

Query: 541  QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
             +++  + + G++           HP+S L    + + P +VVY EL+ T++ FMR +  
Sbjct: 915  NVSK--LDNTGHYKTVKHKHTTHPHPNSCL----FEETPRWVVYFELVFTSKEFMREMSE 968

Query: 361  VEQTWV 344
            +E  W+
Sbjct: 969  IESGWL 974

>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 729

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQK--IAKGPTDLQARRGRKSDPDYRKLRRALCVGY 548
           C ++ +  R MK + +VR QL +I+ +  +    TD  +R        Y  +R+A+  GY
Sbjct: 575 CFENFVNNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSR------DYYVNIRKAMLAGY 628

Query: 547 GNQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNV 368
             Q+A   +   G++      Q+V +HPS+ L+       P +V+Y+E + TTR F+R V
Sbjct: 629 FMQVAH--LERTGHYLTVKDNQVVHLHPSNCLDHK-----PEWVIYNEYVLTTRNFIRTV 681

Query: 367 CGVEQTWV 344
             +   W+
Sbjct: 682 TDIRGEWL 689

>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 703

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
           C +H L  +G+  +  VR QL +++ K          R+  + DPD   + R +  G+  
Sbjct: 565 CQEHFLNYKGLVRAATVREQLKKLLVKFQV------PRKSSEGDPDL--VLRCIVSGFFA 616

Query: 541 QLAERMIHHNGYHTVG-YRT----QLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFM 377
             A        +H+ G YRT      + +HP+SVL  +   K P +V+Y+E+I T++ +M
Sbjct: 617 NAAR-------FHSTGAYRTIRDDHELHIHPASVLYAE---KPPRWVIYNEVIQTSKYYM 666

Query: 376 RNVCGVEQTWV 344
           R+V  +E  W+
Sbjct: 667 RDVTAIESAWL 677

>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16|
            (EC 3.6.1.-)
          Length = 1173

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            CS H L  + +K ++D+R QL +I+ K          +   +S  D+  +RR LC  Y +
Sbjct: 988  CSKHFLHSKTLKRARDIRQQLVEIMSK---------QKISLESVSDWDIVRRVLCSAYFH 1038

Query: 541  QLA-ERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVC 365
            Q A  + I    +   G    L   H +S L G   G LP YV+YHEL+ T++ +M  V 
Sbjct: 1039 QAACAKGIGEYVHLRSGMPCHL---HVTSSLYG--LGYLPDYVIYHELVLTSKEYMNIVT 1093

Query: 364  GVEQTWV 344
             V+  W+
Sbjct: 1094 SVDPYWL 1100

>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 720

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
           C +H L  +G+  +  VR QL +++ K          ++  + DPD   + R +  G+  
Sbjct: 565 CQEHFLNYKGLVRAATVREQLKKLLVKFQV------PKKSSEGDPD--PVLRCIVSGFFA 616

Query: 541 QLAERMIHHNGYHTVG-YRT----QLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFM 377
             A        +H+ G YRT      + +HP+SVL  +   K P +V+Y+E+I T++ +M
Sbjct: 617 NAAR-------FHSTGAYRTIRDDHELHIHPASVLYAE---KPPRWVIYNEVIQTSKYYM 666

Query: 376 RNVCGVEQTWV 344
           R+V  +E  W+
Sbjct: 667 RDVTAIESAWL 677

>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase|
            mog-1 (EC 3.6.1.-) (Sex determination protein mog-1)
            (Masculinization of germ line protein 1)
          Length = 1131

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C+D+ L V+ +K  ++VR QL +I+Q + K P          +  ++  +R+ +C  Y +
Sbjct: 938  CADNYLHVKALKKVREVRAQLKEIMQDL-KLPLI-------SNGSEWDIVRKCICSAYFH 989

Query: 541  QLAERMIHHNGYHTVGYRTQL-VQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVC 365
              A R+     Y  V  RT +   +HP+S L G   G +P YVVYHELI T + +M+ V 
Sbjct: 990  NAA-RLKGIGEY--VNVRTGIPCFLHPTSALFG--MGFMPDYVVYHELIMTAKEYMQCVT 1044

Query: 364  GVEQTWV 344
             V+  W+
Sbjct: 1045 AVDAIWL 1051

>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-) (DEAH|
            box protein 37)
          Length = 1157

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIA-KGPTDLQARRGRKSDPDYRKLRRALCVGYG 545
            C  + L+ + M   + +R QL+  +  +  +    +  +    ++     LR+ +  G G
Sbjct: 875  CEANGLRYKAMMEIRRLRGQLTTAVNAVCPEAELFVDPKMQPPTESQVTYLRQIVTAGLG 934

Query: 544  NQLAERMIHHNGYHTV---GYRTQLVQ----VHPSSVLEGDEYGKLPVYVVYHELINTTR 386
            + LA R+             Y+T L+     +HPSSVL    + +LP +VVY E++ TT+
Sbjct: 935  DHLARRVQSEEMLEDKWRNAYKTPLLDDPVFIHPSSVL----FKELPEFVVYQEIVETTK 990

Query: 385  PFMRNVCGVEQTWV 344
             +M+ V  VE  W+
Sbjct: 991  MYMKGVSSVEVQWI 1004

>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase prp43 (EC 3.6.1.-)
          Length = 735

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYR-KLRRALCVGYG 545
           C +H L  R +  + +VR QL + +++      +++       D +Y   +RRAL  G+ 
Sbjct: 581 CWNHFLSHRALISADNVRKQLRRTMER-----QEVELISTPFDDKNYYVNIRRALVSGFF 635

Query: 544 NQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVC 365
            Q+A++  +   Y T+    Q+V +HPS  L        P +VVY+E + TT+ F+RNV 
Sbjct: 636 MQVAKKSANGKNYVTMK-DNQVVSLHPSCGLS-----VTPEWVVYNEFVLTTKSFIRNVT 689

Query: 364 GVEQTWV 344
            +   W+
Sbjct: 690 AIRPEWL 696

>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)|
          Length = 1055

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 32/121 (26%), Positives = 60/121 (49%)
 Frame = -3

Query: 706  LQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGNQLAER 527
            LQ + +  ++DVR+QL+ + +++     +L        DP    +++A+  GY +  A  
Sbjct: 922  LQYKSLCRARDVRDQLANLCERVE---IELVTNSSESLDP----IKKAITAGYFSNAARL 974

Query: 526  MIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCGVEQTW 347
                + Y TV    Q V +HPSS +      K P  ++Y EL+ TT+ + R +  ++  W
Sbjct: 975  DRSGDSYRTVK-SNQTVYIHPSSSVAE----KKPKVIIYFELVLTTKEYCRQITEIQPEW 1029

Query: 346  V 344
            +
Sbjct: 1030 L 1030

>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2 (EC|
            3.6.1.-)
          Length = 876

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
 Frame = -3

Query: 721  CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
            C DH +Q + M   +++RNQL +  +K+     + QAR    +   Y   R   C   G 
Sbjct: 724  CQDHKIQFKTMLRVRNIRNQLFRCSEKVGLVEKNDQARMKIGNIAGYINARITRCFISGF 783

Query: 541  QLAERMIHHNGYHTVGYRT--QLVQVHPSSVL---EGDEYGKLPVYVVYHELINTTRPFM 377
             +    +   GY T+G  +    V VHP+S+L     ++  +   YV+Y +L+ T++ F+
Sbjct: 784  PMNIVQLGPTGYQTMGRSSGGLNVSVHPTSILFVNHKEKAQRPSKYVLYQQLMLTSKEFI 843

Query: 376  RN 371
            R+
Sbjct: 844  RD 845

>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)|
          Length = 719

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 34/126 (26%), Positives = 58/126 (46%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
           CS + +  R +K   D+R QL +      K   +L +     S+     L  +   GY  
Sbjct: 594 CSQNFINRRALKTILDIRKQLRE---HCLKDGWELNSSPEVNSE----NLLLSFLSGYIT 646

Query: 541 QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
             A  ++H +G +      Q + +HPSS L    +GK    ++YHEL+ TT+ ++R V  
Sbjct: 647 NTA--LLHPDGSYRTIIGNQTISIHPSSSL----FGKKVEAIMYHELVFTTKSYVRGVSS 700

Query: 361 VEQTWV 344
           +   W+
Sbjct: 701 IRSNWL 706

>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 34/126 (26%), Positives = 61/126 (48%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
           C ++ +  + M    +VR QL  I  K++     + + RG     D   +RR  C+ +  
Sbjct: 579 CKENFVNSKNMTLVAEVRAQLRDICLKMSM---PIASSRG-----DVESVRR--CLAHSL 628

Query: 541 QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
            ++   +  +G +      Q V +HPSSVL    +   P  VVY EL+ T + +MR++C 
Sbjct: 629 FMSTAELQPDGTYATTDTHQPVAIHPSSVL----FHCKPACVVYTELLYTNKCYMRDLCV 684

Query: 361 VEQTWV 344
           ++  W+
Sbjct: 685 IDAQWL 690

>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 698

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 34/126 (26%), Positives = 60/126 (47%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
           C ++ +  + M    +VR QL +I  K++     + + RG     D   +RR  C+ +  
Sbjct: 570 CKENFVNSKNMLLVAEVRAQLREICLKMSM---PIMSSRG-----DMESVRR--CMAHSL 619

Query: 541 QLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCG 362
            +    +  +G +      Q V +HPSSVL    +   P  VVY  L+ T + +MR++C 
Sbjct: 620 FMNTAELQTDGTYATTDTHQPVAIHPSSVL----FHCKPACVVYTSLLYTNKCYMRDLCV 675

Query: 361 VEQTWV 344
           V+  W+
Sbjct: 676 VDAEWL 681

>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC|
           3.6.1.-)
          Length = 732

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGN 542
           CSDH +  RG+  + +VR+QL +++++      +++    R        +R+ L  G+ +
Sbjct: 584 CSDHFVNYRGLMRADNVRSQLVRLLKRF-----EIEKVSSRGLINCSENIRQCLVTGFFS 638

Query: 541 QLAERMIHHNG-YHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVC 365
           Q A+   H+ G Y TV           SS++   +Y   P +V++ E++  +   +R+V 
Sbjct: 639 QAAQ--YHYTGKYMTVKESFPFNMYKGSSIMFKKDY---PKWVIFTEVMQDS---IRDVT 690

Query: 364 GVEQTWV 344
            +E  W+
Sbjct: 691 VIEPEWL 697

>HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC 3.6.1.-)|
          Length = 1304

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 22/83 (26%), Positives = 42/83 (50%)
 Frame = -3

Query: 586 DYRKLRRALCVGYGNQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYH 407
           +Y+++  AL  G  + +  +      Y  +G R     + P+SVL    + K P +V+  
Sbjct: 624 EYQQIHTALLSGLLSHIGLKEAEKQQY--LGARNAHFAIFPNSVL----FKKQPKWVMAA 677

Query: 406 ELINTTRPFMRNVCGVEQTWVKP 338
           EL+ T++ + R V  +E  W++P
Sbjct: 678 ELVETSKLWGRMVAEIEPEWIEP 700

>DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC 3.6.1.-)|
           (DEAH box RNA helicase DHR2) (Helicase JA2)
          Length = 735

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = -3

Query: 721 CSDHDLQVRGMKFSKDVRNQLSQIIQKIAKGPT--DLQARRGRKSDPDYRKLRRALCVGY 548
           C    + +RG K    VR+QL    +++    +  D ++++  +      K+ +    G+
Sbjct: 594 CKGLCISIRGFKNVIRVRDQLRVYCKRLFSSISEEDEESKKIGEDGELISKILKCFLTGF 653

Query: 547 GNQLAERMIHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNV 368
               A  M   + Y TV    + + +HPSS+L      K    ++Y E + TT+ + RNV
Sbjct: 654 IKNTAIGMPDRS-YRTVS-TGEPISIHPSSMLF---MNKSCPGIMYTEYVFTTKGYARNV 708

Query: 367 CGVEQTWVK 341
             +E +W++
Sbjct: 709 SRIELSWLQ 717

>HRPA_ECOLI (P43329) ATP-dependent RNA helicase hrpA (EC 3.6.1.-)|
          Length = 1300

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = -3

Query: 679 KDVRNQLSQIIQKIAKGPTDLQARRGRKSDP-DYRKLRRALCVGYGNQLAERMIHHNGYH 503
           +D+  QL Q+++++   P +        S+P +YR++  AL  G  + +  +      Y 
Sbjct: 595 QDIYTQLRQVVKELGI-PVN--------SEPAEYREIHIALLTGLLSHIGMKDADKQEY- 644

Query: 502 TVGYRTQLVQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRNVCGVEQTWVKP 338
             G R     + P S L    + K P +V+  EL+ T+R + R    ++  WV+P
Sbjct: 645 -TGARNARFSIFPGSGL----FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEP 694

>Y598_TREPA (O83607) Hypothetical protein TP0598|
          Length = 605

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 21/52 (40%), Positives = 24/52 (46%)
 Frame = -3

Query: 613 ARRGRKSDPDYRKLRRALCVGYGNQLAERMIHHNGYHTVGYRTQLVQVHPSS 458
           A  GR +  DY K      +     L   M+ HNG H VGYR Q V V  SS
Sbjct: 249 AESGRLTYVDYSKKTTVKRLLTEKNLLSPMLIHNGAHLVGYRDQRVYVIQSS 300

>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-) (DEAH|
            box protein 57)
          Length = 1388

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 478  VQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRN 371
            V +HPSSV     +   P Y++YHE I T+R F+R+
Sbjct: 1264 VHIHPSSVNYQVRHFDSP-YLLYHEKIKTSRVFIRD 1298

>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-) (DEAH|
            box protein 57)
          Length = 1386

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 478  VQVHPSSVLEGDEYGKLPVYVVYHELINTTRPFMRN 371
            V +HPSSV     +   P Y++YHE I T+R F+R+
Sbjct: 1262 VHIHPSSVNYQVRHFDSP-YLLYHEKIKTSRVFIRD 1296

>NOG2_KLULA (Q6CSP9) Nucleolar GTP-binding protein 2|
          Length = 513

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 289 SSALTDSESLEEKQPGSPTKAAAAKQSDVDSKIQAARE 176
           SS  TD+++ EEKQ    T     KQ + D   QAA+E
Sbjct: 162 SSTSTDNKTFEEKQELDSTLGLMGKQEEEDGWTQAAKE 199

>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3|
           subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 271 SESLEEKQPGSPTKAAAAKQSDVDS 197
           SES  EK PG P++ AA   SD DS
Sbjct: 189 SESKAEKSPGKPSEKAAVSDSDSDS 213

>NQO4_PARDE (P29916) NADH-quinone oxidoreductase chain 4 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain 4) (NDH-1, chain 4)
          Length = 412

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = -3

Query: 661 LSQIIQKIAKGPTDLQARRGRKSDPDYRKLRRALCVGYGNQLAERMIHHNGYHTVGYRTQ 482
           + Q +QK+   P      RG+ + P   +++R +         E +IHH   +T G++  
Sbjct: 291 MQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDM---------ESLIHHFKLYTEGFKVP 341

Query: 481 LVQVHPSSVLEGDEYGKLPVYVV 413
             +V+  + +EG + G+  VY+V
Sbjct: 342 AGEVY--AAVEGPK-GEFGVYLV 361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,111,517
Number of Sequences: 219361
Number of extensions: 2003736
Number of successful extensions: 5222
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 5006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5206
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)