ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37d02 |
|---|---|
| Clone Library Name | barley_pub |
>RPB6_RAT (O88828) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 133 bits (334), Expect = 6e-31 Identities = 65/77 (84%), Positives = 70/77 (90%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA+KEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 295 PDGSYEDWGVDELIVED 245 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIISD 127
>RPB6_MOUSE (P61219) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 133 bits (334), Expect = 6e-31 Identities = 65/77 (84%), Positives = 70/77 (90%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA+KEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 295 PDGSYEDWGVDELIVED 245 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIISD 127
>RPB6_PONPY (Q5R592) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 132 bits (333), Expect = 7e-31 Identities = 65/77 (84%), Positives = 70/77 (90%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA+KEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 295 PDGSYEDWGVDELIVED 245 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIITD 127
>RPB6_HUMAN (P61218) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) (RPABC2) Length = 127 Score = 132 bits (333), Expect = 7e-31 Identities = 65/77 (84%), Positives = 70/77 (90%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA+KEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 295 PDGSYEDWGVDELIVED 245 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIITD 127
>RPB6_CRIGR (P61217) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4) Length = 127 Score = 132 bits (333), Expect = 7e-31 Identities = 65/77 (84%), Positives = 70/77 (90%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IA+KEL+ARKIP IRRYL Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110 Query: 295 PDGSYEDWGVDELIVED 245 PDGSYEDWGVDELI+ D Sbjct: 111 PDGSYEDWGVDELIITD 127
>RPB6_YEAST (P20435) DNA-directed RNA polymerases I, II, and III 23 kDa| polypeptide (EC 2.7.7.6) (ABC23) Length = 155 Score = 126 bits (316), Expect = 7e-29 Identities = 61/76 (80%), Positives = 67/76 (88%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERARILGTRALQISMNAPV V+LEGETDPL IA+KEL +KIP IRRYL Sbjct: 79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 138 Query: 295 PDGSYEDWGVDELIVE 248 PDGS+EDW V+ELIV+ Sbjct: 139 PDGSFEDWSVEELIVD 154
>RPB6_DROME (Q24320) DNA-directed RNA polymerases I, II, and III 14.4 kDa| polypeptide (EC 2.7.7.6) (RPB6) Length = 131 Score = 125 bits (315), Expect = 9e-29 Identities = 59/78 (75%), Positives = 70/78 (89%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TTKYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IA+KEL+ +KIP IRRYL Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYL 113 Query: 295 PDGSYEDWGVDELIVEDS 242 PD SYEDW +DELI+ D+ Sbjct: 114 PDHSYEDWSIDELIMVDN 131
>RPB6_SCHPO (P36595) DNA-directed RNA polymerases I, II, and III 15 kDa| polypeptide (EC 2.7.7.6) (RPABC6) Length = 142 Score = 125 bits (314), Expect = 1e-28 Identities = 60/74 (81%), Positives = 66/74 (89%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R TT YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KEL +KIP +RRYL Sbjct: 69 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYL 128 Query: 295 PDGSYEDWGVDELI 254 PDGSYEDW V ELI Sbjct: 129 PDGSYEDWSVAELI 142
>RPB6_CAEEL (Q17684) Probable DNA-directed RNA polymerases I, II, and III 14.4| kDa polypeptide (EC 2.7.7.6) (RPB6) Length = 137 Score = 120 bits (301), Expect = 4e-27 Identities = 57/75 (76%), Positives = 65/75 (86%) Frame = -1 Query: 469 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYLPD 290 TT +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL+ R+IP +RRYLPD Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121 Query: 289 GSYEDWGVDELIVED 245 GSYEDW D+L + D Sbjct: 122 GSYEDWPTDQLQLAD 136
>RPOK_METMA (Q8PW42) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 83 Score = 66.6 bits (161), Expect = 6e-11 Identities = 31/51 (60%), Positives = 42/51 (82%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++ERARI+G RALQI+M APV+VE +G DPL +AI+EL+A IP T++R Sbjct: 30 TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>RPOK_METAC (Q8TT40) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 60 Score = 65.1 bits (157), Expect = 2e-10 Identities = 30/51 (58%), Positives = 41/51 (80%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++ERARI+G RALQI+M APV+V+ +G DPL +AI EL+A IP T++R Sbjct: 7 TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>RPOK_AERPE (Q9YDJ9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 89 Score = 61.2 bits (147), Expect = 3e-09 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Frame = -1 Query: 460 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAIKELRARKIPFTIRRYLPDG 287 Y+TKYERARI+G RA Q+S+ AP +V+ E G +PL+IA E+ +P +I RYLP G Sbjct: 7 YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66 Query: 286 SYEDWGVDELI 254 + + L+ Sbjct: 67 GGQSLSLSRLV 77
>RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.7.7.6)| Length = 396 Score = 60.8 bits (146), Expect = 4e-09 Identities = 31/73 (42%), Positives = 42/73 (57%) Frame = -1 Query: 475 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRRYL 296 R T +T YE RILGTRA Q + A +++ P ++A EL A+ F +RR+L Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHL 246 Query: 295 PDGSYEDWGVDEL 257 P YEDW +DEL Sbjct: 247 PGKKYEDWRIDEL 259
>RPOK_ARCFU (O29134) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 75 Score = 60.1 bits (144), Expect = 6e-09 Identities = 28/51 (54%), Positives = 41/51 (80%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++E+ARI+G RALQI+M APV++E + +T+PLEIA++E IP T+RR Sbjct: 12 TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>RPOK_METTH (O26148) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 61 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/55 (49%), Positives = 41/55 (74%) Frame = -1 Query: 466 TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 +K +T++ERAR++G RALQISM A +VE++ DP++IA KEL + +P +RR Sbjct: 5 SKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>RPOK_PYRAE (Q8ZTF9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 106 Score = 57.4 bits (137), Expect = 4e-08 Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 2/59 (3%) Frame = -1 Query: 457 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAIKELRARKIPFTIRRYLPDG 287 +TKYE ARI+G RALQ++M A +V+++ G DP+ IA++ELR + F I R +PDG Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDG 89
>RPOK_HALSA (Q9HQJ0) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 60 Score = 56.2 bits (134), Expect = 9e-08 Identities = 25/55 (45%), Positives = 43/55 (78%) Frame = -1 Query: 466 TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 +++ ++YE+ARI+G RALQ++ APV+V+ + +T+P+ IA +E A +PFT+RR Sbjct: 4 SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>RPOK_PICTO (Q6L1M4) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 60 Score = 55.5 bits (132), Expect = 1e-07 Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 1/53 (1%) Frame = -1 Query: 457 MTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAIKELRARKIPFTIRR 302 +TK+E+ARI+G RALQI+M APV++++ + DP++IA+ E IP TI+R Sbjct: 6 LTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>RPOK_SULSO (Q97ZJ9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 95 Score = 55.1 bits (131), Expect = 2e-07 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%) Frame = -1 Query: 457 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAIKELRARKIPFTIRRYLPDG 287 +T+YE AR++ RALQ++M AP ++++ TD + IA +E R +P TIRR LP+G Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85
>RPOK_PYRFU (Q8U0E8) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 53.5 bits (127), Expect = 6e-07 Identities = 26/51 (50%), Positives = 35/51 (68%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++E+ARI+G RALQISM APV++++ PLE AI E IP T+ R Sbjct: 5 TRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>RPOK_THEVO (P58232) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 61 Score = 53.1 bits (126), Expect = 7e-07 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAIKELRARKIPFTIRR 302 TK+E+ARI+G RALQI+M APV++++ + DP++IA E IP TI+R Sbjct: 4 TKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>RPOK_PYRHO (P62015) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 52.8 bits (125), Expect = 1e-06 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++E+ARI+G RALQI+M APV++++ PLE AI E IP T+ R Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>RPOK_PYRAB (P62014) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 52.8 bits (125), Expect = 1e-06 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++E+ARI+G RALQI+M APV++++ PLE AI E IP T+ R Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>RPOK_THEAC (Q9HJ14) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 61 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/52 (48%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAIKELRARKIPFTIRR 302 TK+E+ARI+G RALQI+M APV++++ + DP++IA+ E IP TI++ Sbjct: 4 TKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>RPOK_SULAC (P39463) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 89 Score = 50.4 bits (119), Expect = 5e-06 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Frame = -1 Query: 472 NTTKYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAIKELRARKIPFTIRRY 299 N +TKYE ARI+ RALQ+SM A +++ D + IA +EL+ +P TIRR Sbjct: 13 NWKNKLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRI 72 Query: 298 LPDGSYE 278 P+G E Sbjct: 73 YPNGQVE 79
>RPOK_PYRKO (Q5JJD0) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 50.4 bits (119), Expect = 5e-06 Identities = 23/51 (45%), Positives = 35/51 (68%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 T++E+ARI+G RALQI+M APV++++ PL+ A+ E IP T+ R Sbjct: 5 TRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>RPOK_HALMA (P29200) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 50.1 bits (118), Expect = 6e-06 Identities = 25/51 (49%), Positives = 36/51 (70%) Frame = -1 Query: 454 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIPFTIRR 302 ++YE+AR LG RALQ++ APV++E E T P+ IA +E A +PFT+ R Sbjct: 6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>RPOK_SULTO (Q972B1) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 86 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%) Frame = -1 Query: 457 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAIKELRARKIPFTIRRYLPDGS 284 +TKYE ARI+ RALQ++M A +++ D + IA +EL+ +P T+RR P+G Sbjct: 15 LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74 Query: 283 YE 278 E Sbjct: 75 IE 76
>RPOK_METJA (Q57650) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)| Length = 57 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/47 (44%), Positives = 33/47 (70%) Frame = -1 Query: 457 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKELRARKIP 317 +TK+E ARILG R+LQIS A +E + ++ L+IA +E++ K+P Sbjct: 3 LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVP 48
>RPOZ_BRUME (Q8YG64) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 133 Score = 30.8 bits (68), Expect = 3.9 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = -1 Query: 463 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAIKEL 335 K ++E + G RA QIS AP+ V+ + + +P+ +A++E+ Sbjct: 12 KVENRFELVLLAGHRARQISQGAPITVDRDNDKNPV-VALREI 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,071,090 Number of Sequences: 219361 Number of extensions: 1517931 Number of successful extensions: 4197 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4185 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
