ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37c18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 163 bits (82), Expect = 9e-37 Identities = 127/142 (89%) Strand = Plus / Plus Query: 346 ccctcaattgctgtgttccattgattttgccaacttggtggcaattaacagttcatttgt 405 ||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 91588 ccctcaactgctgttttccagggattttgccaacttggtggcaattaacatttcatttgt 91647 Query: 406 ctctttacataatcgctagctagtgtcttgatgactaaaccaaaagggcacaaactccaa 465 |||||| ||||| ||||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 91648 ttctttagataattgctagctagagtcttgaggactaaaccaaaaggccagaaactccaa 91707 Query: 466 aagttggcatttacataatcct 487 || ||||||||||| |||||| Sbjct: 91708 aaagtggcatttacaaaatcct 91729
>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence Length = 144792 Score = 135 bits (68), Expect = 2e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 369 attttgccaacttggtggcaattaacagttcatttgtctctttacataatcgctagctag 428 ||||||||| |||||||||||||| || ||||||||| |||||| ||||| ||||||||| Sbjct: 83253 attttgccatcttggtggcaattagcatttcatttgtttctttagataattgctagctag 83312 Query: 429 tgtcttgatgactaaaccaaaagggcacaaactccaaaagttggcatttaca 480 ||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 83313 agtcttgatgactaaaccaaaaggccagaaactccaaaaagtggcatttaca 83364
>dbj|AK103238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123G15, full insert sequence Length = 744 Score = 97.6 bits (49), Expect = 4e-17 Identities = 119/142 (83%), Gaps = 9/142 (6%) Strand = Plus / Minus Query: 357 tgtgttccattgattttgccaacttggtggcaattaacagttca--tttgtctctttaca 414 ||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||||| | Sbjct: 365 tgtgttccagcgattttgccgacttggtggcaattaacagttcaattttttttctttata 306 Query: 415 taatcgctagctagtgtcttgatga-------ctaaaccaaaagggcacaaactccaaaa 467 |||| |||||||| ||||||| || |||||||||||||||| | ||||||||| Sbjct: 305 taattgctagctatagtcttgaggaatggagactaaaccaaaagggcagacactccaaaa 246 Query: 468 gttggcatttacataatcctga 489 |||||||||||||||||||| Sbjct: 245 agtggcatttacataatcctga 224
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 95.6 bits (48), Expect = 2e-16 Identities = 118/141 (83%), Gaps = 9/141 (6%) Strand = Plus / Minus Query: 357 tgtgttccattgattttgccaacttggtggcaattaacagttca--tttgtctctttaca 414 ||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||||| | Sbjct: 2014444 tgtgttccagcgattttgccgacttggtggcaattaacagttcaattttttttctttata 2014385 Query: 415 taatcgctagctagtgtcttga-------tgactaaaccaaaagggcacaaactccaaaa 467 |||| |||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 2014384 taattgctagctatagtcttgaggaatggagactaaaccaaaagggcagacactccaaaa 2014325 Query: 468 gttggcatttacataatcctg 488 ||||||||||||||||||| Sbjct: 2014324 agtggcatttacataatcctg 2014304
>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1613_G04 Length = 135357 Score = 95.6 bits (48), Expect = 2e-16 Identities = 118/141 (83%), Gaps = 9/141 (6%) Strand = Plus / Minus Query: 357 tgtgttccattgattttgccaacttggtggcaattaacagttca--tttgtctctttaca 414 ||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||||| | Sbjct: 7974 tgtgttccagcgattttgccgacttggtggcaattaacagttcaattttttttctttata 7915 Query: 415 taatcgctagctagtgtcttga-------tgactaaaccaaaagggcacaaactccaaaa 467 |||| |||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 7914 taattgctagctatagtcttgaggaatggagactaaaccaaaagggcagacactccaaaa 7855 Query: 468 gttggcatttacataatcctg 488 ||||||||||||||||||| Sbjct: 7854 agtggcatttacataatcctg 7834
>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0680F05 Length = 185495 Score = 95.6 bits (48), Expect = 2e-16 Identities = 118/141 (83%), Gaps = 9/141 (6%) Strand = Plus / Minus Query: 357 tgtgttccattgattttgccaacttggtggcaattaacagttca--tttgtctctttaca 414 ||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||||| | Sbjct: 139642 tgtgttccagcgattttgccgacttggtggcaattaacagttcaattttttttctttata 139583 Query: 415 taatcgctagctagtgtcttga-------tgactaaaccaaaagggcacaaactccaaaa 467 |||| |||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 139582 taattgctagctatagtcttgaggaatggagactaaaccaaaagggcagacactccaaaa 139523 Query: 468 gttggcatttacataatcctg 488 ||||||||||||||||||| Sbjct: 139522 agtggcatttacataatcctg 139502
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 63589 ctgacaaagtgacaattagtct 63610
>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0051D10, complete sequence Length = 140272 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 9166 ctgacaaagtgacaattagtct 9145
>emb|AL136128.9| Human DNA sequence from clone RP1-84N20 on chromosome 6 Contains a novel gene, the 5' end of the TPD52L1 gene encoding two variants of tumor protein D52-like 1 protein and two CpG islands, complete sequence Length = 151875 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 353 ttgctgtgttccattgattttg 374 |||||||||||||||||||||| Sbjct: 82950 ttgctgtgttccattgattttg 82971
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 26594386 ctgacaaagtgacaattagtct 26594365
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 25336576 ctgacaaagtgacaattagtct 25336597
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 65542 ctgacaaagtgacaattagtct 65521
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 64841 ctgacaaagtgacaattagtct 64820
>dbj|AK103150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120N24, full insert sequence Length = 2347 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 1151 ctgacaaagtgacaattagtct 1172
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 25655246 ctgacaaagtgacaattagtct 25655267
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 26522555 ctgacaaagtgacaattagtct 26522534
>emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727_H11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 85710 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 64393 ctgacaaagtgacaattagtct 64372
>emb|AL731891.2|CNS08C8V Oryza sativa chromosome 12, . BAC OJ1374_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101173 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 ctgacaaagtgacaattagtct 344 |||||||||||||||||||||| Sbjct: 13256 ctgacaaagtgacaattagtct 13235
>gb|AC109585.4| Homo sapiens chromosome 3 clone RP11-802J21, complete sequence Length = 213077 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 464 aaaagttggcatttacataatcctg 488 |||||||| |||||||||||||||| Sbjct: 43271 aaaagttgacatttacataatcctg 43247
>gb|AC126689.4| Mus musculus BAC clone RP23-166P10 from chromosome 8, complete sequence Length = 206377 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 tctgatgtaaaattatctcat 77 ||||||||||||||||||||| Sbjct: 79406 tctgatgtaaaattatctcat 79426
>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence Length = 192062 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 aatactaaagtttaattttta 294 ||||||||||||||||||||| Sbjct: 49669 aatactaaagtttaattttta 49689
>gb|AC108486.2| Homo sapiens chromosome 3 clone RP11-114C6, complete sequence Length = 157904 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 464 aaaagttggcatttacataatcctg 488 |||||||| |||||||||||||||| Sbjct: 116197 aaaagttgacatttacataatcctg 116173
>gb|AC154220.1| Mus musculus BAC clone RP24-364C6 from chromosome 13, complete sequence Length = 175727 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 493 tgtaccccaagttgtcctgag 513 ||||||||||||||||||||| Sbjct: 18988 tgtaccccaagttgtcctgag 19008
>emb|BX005435.16| Zebrafish DNA sequence from clone CH211-154E15 in linkage group 17, complete sequence Length = 166247 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 aagctaaatctaaaatctagg 158 ||||||||||||||||||||| Sbjct: 20061 aagctaaatctaaaatctagg 20041
>gb|AC153947.3| Mus musculus 10 BAC RP24-408C20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 209414 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ttatctcattacaacaacact 89 ||||||||||||||||||||| Sbjct: 64708 ttatctcattacaacaacact 64688
>gb|AC122860.5| Mus musculus BAC clone RP23-135A22 from 12, complete sequence Length = 233864 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 caagagcatctgatgtcccaa 548 ||||||||||||||||||||| Sbjct: 155449 caagagcatctgatgtcccaa 155429
>emb|CR626962.9| Zebrafish DNA sequence from clone CH211-15D5 in linkage group 17, complete sequence Length = 117015 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aagctaaatctaaaatctagg 158 ||||||||||||||||||||| Sbjct: 4209 aagctaaatctaaaatctagg 4229
>ref|NM_005599.2| Homo sapiens nescient helix loop helix 2 (NHLH2), mRNA Length = 2518 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 923 gggcggggtgcgccgcgggg 942
>gb|AC121146.8| Mus musculus chromosome 3, clone RP24-297G3, complete sequence Length = 157105 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 acaccactgcttcttttcta 126 |||||||||||||||||||| Sbjct: 113568 acaccactgcttcttttcta 113549
>gb|AC135361.3| Mus musculus BAC clone RP23-216A21 from chromosome 14, complete sequence Length = 203946 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gaaagctaaatctaaaatct 155 |||||||||||||||||||| Sbjct: 4835 gaaagctaaatctaaaatct 4854
>gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome 9, complete sequence Length = 170896 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 309 agagaccttgggcactgacaaagtgaca 336 |||||| |||| |||||||||||||||| Sbjct: 71946 agagacattggacactgacaaagtgaca 71919
>gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, complete sequence Length = 168968 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gaaagctaaatctaaaatct 155 |||||||||||||||||||| Sbjct: 17467 gaaagctaaatctaaaatct 17448
>ref|XM_760776.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0342) partial mRNA Length = 5241 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aaattatctcattacaacaa 85 |||||||||||||||||||| Sbjct: 1398 aaattatctcattacaacaa 1417
>gb|U41279.1| Caenorhabditis elegans cosmid C17C3, complete sequence Length = 45355 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aacagttcatttgtctcttt 411 |||||||||||||||||||| Sbjct: 12444 aacagttcatttgtctcttt 12463
>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5' end of the CASQ2 gene for calsequestrin 2 (cardiac muscle), the NHLH2 gene for nescient helix loop helix 2, a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene and two CpG islands, complete sequence Length = 164655 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 104492 gggcggggtgcgccgcgggg 104473
>emb|AL731825.1|BTPBTOXIS Bacillus thuringiensis subsp. israelensis plasmid pBtoxis Length = 127923 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 actgcttcttttctacactt 131 |||||||||||||||||||| Sbjct: 1965 actgcttcttttctacactt 1946
>emb|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6 Length = 199386 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 aatactaaagtttaattttt 293 |||||||||||||||||||| Sbjct: 154985 aatactaaagtttaattttt 154966
>emb|CR450704.7| Zebrafish DNA sequence from clone DKEY-65O14 in linkage group 8, complete sequence Length = 191439 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aaagttggcatttacataat 484 |||||||||||||||||||| Sbjct: 144263 aaagttggcatttacataat 144282
>gb|BC028729.1| Homo sapiens cDNA clone IMAGE:4811590 Length = 4177 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 81 gggcggggtgcgccgcgggg 62
>gb|BC096361.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone MGC:117068 IMAGE:40010652), complete cds Length = 1051 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 870 gggcggggtgcgccgcgggg 889
>gb|BC096359.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone MGC:117066 IMAGE:40010648), complete cds Length = 1051 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 870 gggcggggtgcgccgcgggg 889
>gb|BC096362.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone MGC:117069 IMAGE:40010653), complete cds Length = 1051 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 870 gggcggggtgcgccgcgggg 889
>gb|BC096360.1| Homo sapiens nescient helix loop helix 2, mRNA (cDNA clone MGC:117067 IMAGE:40010649), complete cds Length = 1048 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 870 gggcggggtgcgccgcgggg 889
>emb|BX544876.8| Zebrafish DNA sequence from clone CH211-167B20 in linkage group 8, complete sequence Length = 154624 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aaagttggcatttacataat 484 |||||||||||||||||||| Sbjct: 13045 aaagttggcatttacataat 13064
>dbj|AK056621.1| Homo sapiens cDNA FLJ32059 fis, clone NTONG2001676, highly similar to HELIX-LOOP-HELIX PROTEIN 2 Length = 2657 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 1384 gggcggggtgcgccgcgggg 1403
>gb|AC155331.5| Mus musculus 6 BAC RP24-189G6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 160364 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tccatagacaaataacactc 58 |||||||||||||||||||| Sbjct: 121788 tccatagacaaataacactc 121769
>gb|AF345635.1| Mus musculus pirin gene, partial cds; and VEGF-D gene, promoter region and 5' UTR, partial sequence Length = 3448 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgtctccaactgcagagacc 315 |||||||||||||||||||| Sbjct: 1107 tgtctccaactgcagagacc 1088
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cactgacaaagtgacaatta 340 |||||||||||||||||||| Sbjct: 21893272 cactgacaaagtgacaatta 21893291
>gb|AC153994.8| Mus musculus 6 BAC RP24-178H18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179333 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tccatagacaaataacactc 58 |||||||||||||||||||| Sbjct: 4326 tccatagacaaataacactc 4307
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cactgacaaagtgacaatta 340 |||||||||||||||||||| Sbjct: 115757 cactgacaaagtgacaatta 115776
>gb|AC004082.1|AC004082 Homo sapiens PAC clone RP5-897G10 from 7q11.23-q21.1, complete sequence Length = 98029 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 ttacataatcctgaaactgt 495 |||||||||||||||||||| Sbjct: 57989 ttacataatcctgaaactgt 58008
>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20, complete sequence Length = 153344 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 atattcaacttattttccat 584 |||||||||||||||||||| Sbjct: 22790 atattcaacttattttccat 22771
>gb|M97508.1|HUMHEN2A Homo sapiens helix-loop-helix protein (HEN2) gene, complete cds Length = 2156 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 864 gggcggggtgcgccgcgggg 883
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete sequence Length = 165720 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgtctccaactgcagagacc 315 |||||||||||||||||||| Sbjct: 61579 tgtctccaactgcagagacc 61560
>gb|M96740.1|HUMNSCL2A Human NSCL-2 gene sequence Length = 2519 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 942 gggcggggtgcgccgcgggg 961
>dbj|AB007959.1| Homo sapiens mRNA, chromosome 1 specific transcript KIAA0490 Length = 6075 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 gggcggggtgcgccgcgggg 642 |||||||||||||||||||| Sbjct: 120 gggcggggtgcgccgcgggg 101 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,991,429 Number of Sequences: 3902068 Number of extensions: 6991429 Number of successful extensions: 134987 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134663 Number of HSP's gapped (non-prelim): 324 length of query: 650 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 627 effective length of database: 17,143,297,704 effective search space: 10748847660408 effective search space used: 10748847660408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
