ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
2dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
3dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
4dbj|AK120796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
5dbj|AK059623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
6gb|AY112572.1| Zea mays CL32597_1 mRNA sequence 151 3e-33
7gb|AC101778.9| Mus musculus chromosome 1, clone RP24-125B8, comp... 40 8.6
8emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chr... 40 8.6
9ref|XM_822909.1| Trypanosoma brucei TREU927 hypothetical protein... 40 8.6
10gb|AC122032.4| Mus musculus BAC clone RP24-402M18 from chromosom... 40 8.6
11emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on ch... 40 8.6
12gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosom... 40 8.6
13gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-3... 40 8.6
14dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, ... 40 8.6
15emb|BX088720.8| Zebrafish DNA sequence from clone CH211-195M2 in... 40 8.6
16dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.6
17dbj|AP000159.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 8.6
18dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 8.6
19dbj|AP001410.1| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 40 8.6 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                           
Query: 308     ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 367
               ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 8971054 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 8971113

                                                                           
Query: 368     aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 427
               ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 8971114 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 8971173

                                                                           
Query: 428     gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 487
               ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 8971174 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 8971233

                                            
Query: 488     tttggatggaacgatcttcgagcaggcca 516
               ||||||||||| |||||||||||||||||
Sbjct: 8971234 tttggatggaatgatcttcgagcaggcca 8971262
to top
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0084K06
          Length = 177895

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                         
Query: 308   ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 367
             ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 18372 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 18431

                                                                         
Query: 368   aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 427
             ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 18432 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 18491

                                                                         
Query: 428   gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 487
             ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 18492 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 18551

                                          
Query: 488   tttggatggaacgatcttcgagcaggcca 516
             ||||||||||| |||||||||||||||||
Sbjct: 18552 tttggatggaatgatcttcgagcaggcca 18580
to top
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528B02
          Length = 144495

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                          
Query: 308    ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 367
              ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 136683 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 136742

                                                                          
Query: 368    aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 427
              ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 136743 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 136802

                                                                          
Query: 428    gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 487
              ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 136803 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 136862

                                           
Query: 488    tttggatggaacgatcttcgagcaggcca 516
              ||||||||||| |||||||||||||||||
Sbjct: 136863 tttggatggaatgatcttcgagcaggcca 136891
to top
>dbj|AK120796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D20, full
            insert sequence
          Length = 1994

 Score =  224 bits (113), Expect = 3e-55
 Identities = 185/209 (88%)
 Strand = Plus / Minus

                                                                        
Query: 308  ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 367
            ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 1764 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 1705

                                                                        
Query: 368  aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 427
            ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 1704 aatgcattaacaacgttctgtagtcgggcaacaaactcgattagaagggaggcaaatgtg 1645

                                                                        
Query: 428  gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 487
            ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 1644 gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 1585

                                         
Query: 488  tttggatggaacgatcttcgagcaggcca 516
            ||||||||||| |||||||||||||||||
Sbjct: 1584 tttggatggaatgatcttcgagcaggcca 1556
to top
>dbj|AK059623.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H05, full
            insert sequence
          Length = 1222

 Score =  216 bits (109), Expect = 7e-53
 Identities = 184/209 (88%)
 Strand = Plus / Minus

                                                                        
Query: 308  ctaactgtaacaggctcctccacagggtccttgaaattagccttctcactcagctcctcg 367
            ||||||| ||||||||||| |||||| || ||||| |||||||| ||||||| ||| |  
Sbjct: 1015 ctaactgcaacaggctcctgcacaggctctttgaagttagccttatcactcaactcttga 956

                                                                        
Query: 368  aatgcgttaacaacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgtt 427
            ||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||| 
Sbjct: 955  aatgcattaacaacgttctgcagtcgggcaacaaactcgattagaagggaggcaaatgtg 896

                                                                        
Query: 428  gccaaggacaaggcacttgcactttcatatgtttttgactcctcgtcttcaagcggtaag 487
            ||||||||||  |||||||||||||||||||||||||  |||||||||||||| || |  
Sbjct: 895  gccaaggacagagcacttgcactttcatatgtttttgtttcctcgtcttcaagtggcaga 836

                                         
Query: 488  tttggatggaacgatcttcgagcaggcca 516
            ||||||||||| |||||||||||||||||
Sbjct: 835  tttggatggaatgatcttcgagcaggcca 807
to top
>gb|AY112572.1| Zea mays CL32597_1 mRNA sequence
          Length = 480

 Score =  151 bits (76), Expect = 3e-33
 Identities = 139/160 (86%)
 Strand = Plus / Plus

                                                                       
Query: 319 aggctcctccacagggtccttgaaattagccttctcactcagctcctcgaatgcgttaac 378
           ||||||| ||||||| ||||| || |||||||||||||||| ||| || |||||||||||
Sbjct: 321 aggctccaccacaggatccttaaagttagccttctcactcaactcttcaaatgcgttaac 380

                                                                       
Query: 379 aacgttctgtagccgggcaacaaactcgattaggagcgaggcaaatgttgccaaggacaa 438
           ||| |||||||| | |||||||||||| || ||||| || |||||||| |||||||||||
Sbjct: 381 aacattctgtagtctggcaacaaactcaatcaggagtgatgcaaatgtagccaaggacaa 440

                                                   
Query: 439 ggcacttgcactttcatatgtttttgactcctcgtcttca 478
           |||||| || |||||||||||||  || ||||| ||||||
Sbjct: 441 ggcactcgcgctttcatatgtttgggaatcctcatcttca 480
to top
>gb|AC101778.9| Mus musculus chromosome 1, clone RP24-125B8, complete sequence
          Length = 173893

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   ctttcatatgtttttgactc 468
             ||||||||||||||||||||
Sbjct: 44010 ctttcatatgtttttgactc 43991
to top
>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete
             sequence
          Length = 154367

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tcttctcattgcacacacac 139
             ||||||||||||||||||||
Sbjct: 17836 tcttctcattgcacacacac 17855
to top
>ref|XM_822909.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.61.1190)
            partial mRNA
          Length = 4938

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  tgaaattagccttctcactc 358
            ||||||||||||||||||||
Sbjct: 3879 tgaaattagccttctcactc 3898
to top
>gb|AC122032.4| Mus musculus BAC clone RP24-402M18 from chromosome 1, complete sequence
          Length = 161153

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   ctttcatatgtttttgactc 468
             ||||||||||||||||||||
Sbjct: 10553 ctttcatatgtttttgactc 10534
to top
>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
             sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   gtccaaaattattaaacaaa 185
             ||||||||||||||||||||
Sbjct: 24310 gtccaaaattattaaacaaa 24329
to top
>gb|AC162900.3| Mus musculus BAC clone RP23-416N10 from chromosome 1, complete sequence
          Length = 186662

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   ctttcatatgtttttgactc 468
             ||||||||||||||||||||
Sbjct: 47027 ctttcatatgtttttgactc 47046
to top
>gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-39i23, complete
             sequence
          Length = 131165

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   aatcatatcggctaagaaac 574
             ||||||||||||||||||||
Sbjct: 54062 aatcatatcggctaagaaac 54043
to top
>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete
             sequences
          Length = 207747

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ttaaacacagtaacttagaa 39
             ||||||||||||||||||||
Sbjct: 58768 ttaaacacagtaacttagaa 58787
to top
>emb|BX088720.8| Zebrafish DNA sequence from clone CH211-195M2 in linkage group 22,
              complete sequence
          Length = 190269

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    acagatctgcatattttagc 285
              ||||||||||||||||||||
Sbjct: 147786 acagatctgcatattttagc 147767
to top
>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ttaaacacagtaacttagaa 39
              ||||||||||||||||||||
Sbjct: 221154 ttaaacacagtaacttagaa 221173
to top
>dbj|AP000159.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 11/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ttaaacacagtaacttagaa 39
             ||||||||||||||||||||
Sbjct: 68571 ttaaacacagtaacttagaa 68590
to top
>dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment
            9/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   ttaaacacagtaacttagaa 39
            ||||||||||||||||||||
Sbjct: 2967 ttaaacacagtaacttagaa 2986
to top
>dbj|AP001410.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:7A4, LB7T-ERG
            region, complete sequence
          Length = 39834

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   ttaaacacagtaacttagaa 39
            ||||||||||||||||||||
Sbjct: 1661 ttaaacacagtaacttagaa 1680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,252,509
Number of Sequences: 3902068
Number of extensions: 5252509
Number of successful extensions: 91183
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91114
Number of HSP's gapped (non-prelim): 69
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top