ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags37c06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009421.1| Triticum aestivum clone wlmk1.pk0015.g6:fis, full insert mRNA sequence Length = 2253 Score = 1057 bits (533), Expect = 0.0 Identities = 647/683 (94%), Gaps = 4/683 (0%) Strand = Plus / Minus Query: 1 gcaaatttctttt-agacatcatcctgctgaactgagcagacttaaaatacatcgcggcg 59 ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2173 gcaaacttcttttcagacatcatcctgctgaactgagcagtcttaaaatacatcgcggcg 2114 Query: 60 acaacgccgattatttgaaccaccctggctagacttacaactcaataggtgaaataacaa 119 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 2113 acaacgccgattatttgaagaaccctggctagacttacaactcaataggtgaaacaacaa 2054 Query: 120 agaaatgaaggcaacaagaaccaaatcaacaccccatgactaataata---tctgaacac 176 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 2053 agaaatgaaggcaacaagaaccaaatcaccaccccatgactaataataatatctgaacac 1994 Query: 177 cctacaaaatgtgtaactattttttccctgggtaccatgatgtggcaccagctggctgca 236 ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| Sbjct: 1993 gctacaaaatgtgtaactatattttccctgggcaccatgatgtggcaccagcaggctgca 1934 Query: 237 aaagctccttgtcaggctaggggtgccgatcttgttgcagggaagacagcaggctcgtaa 296 |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| | Sbjct: 1933 aaagctccttgtcaggctagggttgccgatctcgttgcggggaagacagcaggctcgtga 1874 Query: 297 tgaaactaagggccttcaagagaggctggggtggatgattttgctcgcgttcctgcccgt 356 ||||||||||| |||||||||| |||||||||||||||||| |||| || |||||||||| Sbjct: 1873 tgaaactaaggaccttcaagagcggctggggtggatgatttggctcacgctcctgcccgt 1814 Query: 357 ctttaggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagct 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1813 ctttaggctgcaactggttcatttacagaatgagagacacctgaattaaccttggccgct 1754 Query: 417 ttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagt 476 ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 1753 ttgaagagttcgtcgagcacttcggataatgttgggtgtgcatggacagcaagcttaagt 1694 Query: 477 tcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcg 536 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1693 tcttgcaaccgagttcctagggcaatggcatttgatgcctcatggatgaggtcagcagcg 1634 Query: 537 tgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatctta 596 |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| Sbjct: 1633 tgcaaacccaagatgtgaacaccaagaatttctcccgtgtcaggtctgtagatcatctta 1574 Query: 597 gcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtctta 656 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1573 gcaattccatcgccttcattttctgccaaagcttttgtgttggccttaaaactggtctta 1514 Query: 657 acaacacttacctcgaacccttc 679 |||||||||||||| || ||||| Sbjct: 1513 acaacacttacctcaaatccttc 1491
>gb|BT009304.1| Triticum aestivum clone wlm1.pk0015.c4:fis, full insert mRNA sequence Length = 1511 Score = 1057 bits (533), Expect = 0.0 Identities = 647/683 (94%), Gaps = 4/683 (0%) Strand = Plus / Minus Query: 1 gcaaatttctttt-agacatcatcctgctgaactgagcagacttaaaatacatcgcggcg 59 ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1488 gcaaacttcttttcagacatcatcctgctgaactgagcagtcttaaaatacatcgcggcg 1429 Query: 60 acaacgccgattatttgaaccaccctggctagacttacaactcaataggtgaaataacaa 119 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 1428 acaacgccgattatttgaagaaccctggctagacttacaactcaataggtgaaacaacaa 1369 Query: 120 agaaatgaaggcaacaagaaccaaatcaacaccccatgactaataata---tctgaacac 176 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 1368 agaaatgaaggcaacaagaaccaaatcaccaccccatgactaataataatatctgaacac 1309 Query: 177 cctacaaaatgtgtaactattttttccctgggtaccatgatgtggcaccagctggctgca 236 ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| Sbjct: 1308 gctacaaaatgtgtaactatattttccctgggcaccatgatgtggcaccagcaggctgca 1249 Query: 237 aaagctccttgtcaggctaggggtgccgatcttgttgcagggaagacagcaggctcgtaa 296 |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| | Sbjct: 1248 aaagctccttgtcaggctagggttgccgatctcgttgcggggaagacagcaggctcgtga 1189 Query: 297 tgaaactaagggccttcaagagaggctggggtggatgattttgctcgcgttcctgcccgt 356 ||||||||||| |||||||||| |||||||||||||||||| |||| || |||||||||| Sbjct: 1188 tgaaactaaggaccttcaagagcggctggggtggatgatttggctcacgctcctgcccgt 1129 Query: 357 ctttaggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagct 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1128 ctttaggctgcaactggttcatttacagaatgagagacacctgaattaaccttggccgct 1069 Query: 417 ttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagt 476 ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 1068 ttgaagagttcgtcgagcacttcggataatgttgggtgtgcatggacagcaagcttaagt 1009 Query: 477 tcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcg 536 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1008 tcttgcaaccgagttcctagggcaatggcatttgatgcctcatggatgaggtcagcagcg 949 Query: 537 tgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatctta 596 |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| Sbjct: 948 tgcaaacccaagatgtgaacaccaagaatttctcccgtgtcaggtctgtagatcatctta 889 Query: 597 gcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtctta 656 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 888 gcaattccatcgccttcattttctgccaaagcttttgtgttggccttaaaactggtctta 829 Query: 657 acaacacttacctcgaacccttc 679 |||||||||||||| || ||||| Sbjct: 828 acaacacttacctcaaatccttc 806
>gb|BT018798.1| Zea mays clone EL01N0528G06.d mRNA sequence Length = 2247 Score = 369 bits (186), Expect = 8e-99 Identities = 291/326 (89%) Strand = Plus / Minus Query: 360 taggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagctttg 419 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 1828 taggctgcaactggttcatttacagaatgagaaacaccggaattaaccttggctgctttg 1769 Query: 420 aagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagttct 479 |||||||| || || || ||||| ||||| |||||||| |||||||||| ||| | ||| Sbjct: 1768 aagagttcatccaggacctcagacaatgtagggtgtgcgtgaacagcaaacttgatgtct 1709 Query: 480 tgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgc 539 |||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 1708 tgcacacgagttcctagggcgatggcatttgatgcctcgtgaatgagatcagcagcatgc 1649 Query: 540 aaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatcttagca 599 |||||||| |||||||| || |||||||| ||||||||||||||||| |||| ||||||| Sbjct: 1648 aaacccaaaatgtgaaccccaagaatttcacccgtgtcaggtcggtaaatcaacttagca 1589 Query: 600 ataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtcttaaca 659 || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| Sbjct: 1588 atcccatctccttcattttctgccaaagctttagtgttagccttaaagctagtcttcaca 1529 Query: 660 acacttacctcgaacccttcattatc 685 ||| ||||||| || ||||| ||||| Sbjct: 1528 acatttacctcaaatccttctttatc 1503
>gb|BT017765.1| Zea mays clone EL01N0502A07.c mRNA sequence Length = 1284 Score = 369 bits (186), Expect = 8e-99 Identities = 291/326 (89%) Strand = Plus / Minus Query: 360 taggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagctttg 419 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 826 taggctgcaactggttcatttacagaatgagaaacaccggaattaaccttggctgctttg 767 Query: 420 aagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagttct 479 |||||||| || || || ||||| ||||| |||||||| |||||||||| ||| | ||| Sbjct: 766 aagagttcatccaggacctcagacaatgtagggtgtgcgtgaacagcaaacttgatgtct 707 Query: 480 tgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgc 539 |||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 706 tgcacacgagttcctagggcgatggcatttgatgcctcgtgaatgagatcagcagcatgc 647 Query: 540 aaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatcttagca 599 |||||||| |||||||| || |||||||| ||||||||||||||||| |||| ||||||| Sbjct: 646 aaacccaaaatgtgaaccccaagaatttcacccgtgtcaggtcggtaaatcaacttagca 587 Query: 600 ataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtcttaaca 659 || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| Sbjct: 586 atcccatctccttcattttctgccaaagctttagtgttagccttaaagctagtcttcaca 527 Query: 660 acacttacctcgaacccttcattatc 685 ||| ||||||| || ||||| ||||| Sbjct: 526 acatttacctcaaatccttctttatc 501
>gb|AY104528.1| Zea mays PCO111841 mRNA sequence Length = 2186 Score = 369 bits (186), Expect = 8e-99 Identities = 291/326 (89%) Strand = Plus / Minus Query: 360 taggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagctttg 419 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 1814 taggctgcaactggttcatttacagaatgagaaacaccggaattaaccttggctgctttg 1755 Query: 420 aagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagttct 479 |||||||| || || || ||||| ||||| |||||||| |||||||||| ||| | ||| Sbjct: 1754 aagagttcatccaggacctcagacaatgtagggtgtgcgtgaacagcaaacttgatgtct 1695 Query: 480 tgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgc 539 |||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct: 1694 tgcacacgagttcctagggcgatggcatttgatgcctcgtgaatgagatcagcagcatgc 1635 Query: 540 aaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatcttagca 599 |||||||| |||||||| || |||||||| ||||||||||||||||| |||| ||||||| Sbjct: 1634 aaacccaaaatgtgaaccccaagaatttcacccgtgtcaggtcggtaaatcaacttagca 1575 Query: 600 ataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtcttaaca 659 || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| Sbjct: 1574 atcccatctccttcattttctgccaaagctttagtgttagccttaaagctagtcttcaca 1515 Query: 660 acacttacctcgaacccttcattatc 685 ||| ||||||| || ||||| ||||| Sbjct: 1514 acatttacctcaaatccttctttatc 1489
>ref|NM_185283.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1692 Score = 319 bits (161), Expect = 7e-84 Identities = 251/281 (89%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| ||||||||||| || || || || ||||||||||||||||||||| Sbjct: 1658 accttggctgctttaaagagttcgtccagcacctcggacaatgttgggtgtgcatgaaca 1599 Query: 465 gcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatg 524 |||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 gcaaacttgatgtcttgcaaccgagttcctagggcaatggcatttgatgcctcgtggatg 1539 Query: 525 aggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcgg 584 ||||||||||||||||||||||| ||||| || || ||||||||||| |||||||| ||| Sbjct: 1538 aggtcagcagcgtgcaaacccaaaatgtgcacaccaagaatttctccagtgtcaggccgg 1479 Query: 585 tagatcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggcctta 644 || |||| |||||||| ||||| ||||||||||||||||| |||||||| || |||||| Sbjct: 1478 taaatcaacttagcaagtccatctccttcattttctgccaatgcttttgtattagcctta 1419 Query: 645 aagctggtcttaacaacacttacctcgaacccttcattatc 685 |||||||||||||||||||||| ||| || ||||| ||||| Sbjct: 1418 aagctggtcttaacaacacttatctcaaatccttctttatc 1378
>ref|NM_183915.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1686 Score = 297 bits (150), Expect = 2e-77 Identities = 282/326 (86%) Strand = Plus / Minus Query: 360 taggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagctttg 419 |||||||| || || |||||||| ||||||| ||||||| ||||||||||||||||||| Sbjct: 1685 taggctgcgacgggctcatttacggaatgaggaacacctgcattaaccttggcagctttg 1626 Query: 420 aagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagttct 479 ||||| || || || || ||||| || |||||||||||||||||||||| ||| | ||| Sbjct: 1625 aagagctcatccagaacctcagacaaagttgggtgtgcatgaacagcaaacttgatgtct 1566 Query: 480 tgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgc 539 || | ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 1565 tgtacacgagttccgagggcaatggcgtttgatgcctcgtggatgaggtcagcagcatgc 1506 Query: 540 aaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatcttagca 599 ||||| || |||||||| || ||||||||||| |||||||| ||||| |||||||||||| Sbjct: 1505 aaacctaatatgtgaactccaagaatttctccagtgtcaggccggtaaatcatcttagca 1446 Query: 600 ataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtcttaaca 659 | ||||| |||||||| || |||| ||| || ||||| ||||| ||||||||||||||| Sbjct: 1445 agtccatctccttcattctcagccagagccttcgtgtttgccttgaagctggtcttaaca 1386 Query: 660 acacttacctcgaacccttcattatc 685 ||||||| ||| || ||||| ||||| Sbjct: 1385 acacttatctcaaatccttccttatc 1360
>dbj|AK120645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155F12, full insert sequence Length = 2140 Score = 297 bits (150), Expect = 2e-77 Identities = 282/326 (86%) Strand = Plus / Minus Query: 360 taggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagctttg 419 |||||||| || || |||||||| ||||||| ||||||| ||||||||||||||||||| Sbjct: 1860 taggctgcgacgggctcatttacggaatgaggaacacctgcattaaccttggcagctttg 1801 Query: 420 aagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaagcttaagttct 479 ||||| || || || || ||||| || |||||||||||||||||||||| ||| | ||| Sbjct: 1800 aagagctcatccagaacctcagacaaagttgggtgtgcatgaacagcaaacttgatgtct 1741 Query: 480 tgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgc 539 || | ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 1740 tgtacacgagttccgagggcaatggcgtttgatgcctcgtggatgaggtcagcagcatgc 1681 Query: 540 aaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatcttagca 599 ||||| || |||||||| || ||||||||||| |||||||| ||||| |||||||||||| Sbjct: 1680 aaacctaatatgtgaactccaagaatttctccagtgtcaggccggtaaatcatcttagca 1621 Query: 600 ataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggtcttaaca 659 | ||||| |||||||| || |||| ||| || ||||| ||||| ||||||||||||||| Sbjct: 1620 agtccatctccttcattctcagccagagccttcgtgtttgccttgaagctggtcttaaca 1561 Query: 660 acacttacctcgaacccttcattatc 685 ||||||| ||| || ||||| ||||| Sbjct: 1560 acacttatctcaaatccttccttatc 1535
>gb|AY105982.1| Zea mays PCO127232 mRNA sequence Length = 1258 Score = 232 bits (117), Expect = 1e-57 Identities = 228/265 (86%) Strand = Plus / Minus Query: 402 ttaaccttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatga 461 |||||||||||||| ||||||||||| || || |||||||| || ||||||||||||||| Sbjct: 1023 ttaaccttggcagccttgaagagttcatccagaacttcagacaacgttgggtgtgcatga 964 Query: 462 acagcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtgg 521 ||||||| ||| | || |||| | | ||||| ||||||||||||||||||||||| ||| Sbjct: 963 acagcaaacttgatgtcctgcacatgggttccaagggcaatggcatttgatgcctcatgg 904 Query: 522 atgaggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggt 581 ||||| |||||||| ||||| ||||| || ||||| || ||||||||||| |||||||| Sbjct: 903 atgagatcagcagcatgcaagcccaaaatatgaactccaagaatttctccggtgtcaggg 844 Query: 582 cggtagatcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggcc 641 || || ||||||||||||| ||||| |||||||| ||||||| || |||||||| ||| Sbjct: 843 cgataaatcatcttagcaagtccatctccttcattctctgccagggcctttgtgttagcc 784 Query: 642 ttaaagctggtcttaacaacactta 666 ||||| |||||||| |||||||||| Sbjct: 783 ttaaaactggtctttacaacactta 759
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 163 bits (82), Expect = 9e-37 Identities = 106/114 (92%) Strand = Plus / Plus Query: 478 cttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgt 537 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131479 cttgcaaccgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgt 131538 Query: 538 gcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatca 591 |||||||||| ||||| || || ||||||||||| |||||||| ||||| |||| Sbjct: 131539 gcaaacccaaaatgtgcacaccaagaatttctccagtgtcaggccggtaaatca 131592 Score = 113 bits (57), Expect = 8e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 284 agcaggctcgtaatgaaactaagggccttcaagagaggctggggtggatgattttgctcg 343 ||||||| ||| | |||||||||| |||||| ||| || || |||||||| ||| ||| | Sbjct: 131093 agcaggcgcgtgacgaaactaaggaccttcaggagtggttgtggtggatgctttggcttg 131152 Query: 344 cgttcctgcccgtctttaggctgcaactggttcatttacagaatgagagacacctgaatt 403 || ||| |||| ||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 131153 cgctccggcccttctctaggctgcaactggttcatttacagaatgagaaacacccgaatt 131212 Query: 404 aacct 408 ||||| Sbjct: 131213 aacct 131217 Score = 105 bits (53), Expect = 2e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 593 cttagcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggt 652 |||||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 131767 cttagcaagtccatctccttcattttctgccaatgcttttgtattagccttaaagctggt 131826 Query: 653 cttaacaacacttacctcgaacccttcattatc 685 |||||||||||||| ||| || ||||| ||||| Sbjct: 131827 cttaacaacacttatctcaaatccttctttatc 131859 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| ||||||||||| || || || || ||||||||||||||||||||| Sbjct: 131310 accttggctgctttaaagagttcgtccagcacctcggacaatgttgggtgtgcatgaaca 131369 Query: 465 gcaa 468 |||| Sbjct: 131370 gcaa 131373
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 163 bits (82), Expect = 9e-37 Identities = 106/114 (92%) Strand = Plus / Plus Query: 478 cttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgt 537 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3253762 cttgcaaccgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgt 3253821 Query: 538 gcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatca 591 |||||||||| ||||| || || ||||||||||| |||||||| ||||| |||| Sbjct: 3253822 gcaaacccaaaatgtgcacaccaagaatttctccagtgtcaggccggtaaatca 3253875 Score = 113 bits (57), Expect = 8e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 284 agcaggctcgtaatgaaactaagggccttcaagagaggctggggtggatgattttgctcg 343 ||||||| ||| | |||||||||| |||||| ||| || || |||||||| ||| ||| | Sbjct: 3253376 agcaggcgcgtgacgaaactaaggaccttcaggagtggttgtggtggatgctttggcttg 3253435 Query: 344 cgttcctgcccgtctttaggctgcaactggttcatttacagaatgagagacacctgaatt 403 || ||| |||| ||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 3253436 cgctccggcccttctctaggctgcaactggttcatttacagaatgagaaacacccgaatt 3253495 Query: 404 aacct 408 ||||| Sbjct: 3253496 aacct 3253500 Score = 105 bits (53), Expect = 2e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 593 cttagcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggt 652 |||||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 3254050 cttagcaagtccatctccttcattttctgccaatgcttttgtattagccttaaagctggt 3254109 Query: 653 cttaacaacacttacctcgaacccttcattatc 685 |||||||||||||| ||| || ||||| ||||| Sbjct: 3254110 cttaacaacacttatctcaaatccttctttatc 3254142 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| ||||||||||| || || || || ||||||||||||||||||||| Sbjct: 3253593 accttggctgctttaaagagttcgtccagcacctcggacaatgttgggtgtgcatgaaca 3253652 Query: 465 gcaa 468 |||| Sbjct: 3253653 gcaa 3253656
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 163 bits (82), Expect = 9e-37 Identities = 106/114 (92%) Strand = Plus / Plus Query: 478 cttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgt 537 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47586 cttgcaaccgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgt 47645 Query: 538 gcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatca 591 |||||||||| ||||| || || ||||||||||| |||||||| ||||| |||| Sbjct: 47646 gcaaacccaaaatgtgcacaccaagaatttctccagtgtcaggccggtaaatca 47699 Score = 113 bits (57), Expect = 8e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 284 agcaggctcgtaatgaaactaagggccttcaagagaggctggggtggatgattttgctcg 343 ||||||| ||| | |||||||||| |||||| ||| || || |||||||| ||| ||| | Sbjct: 47200 agcaggcgcgtgacgaaactaaggaccttcaggagtggttgtggtggatgctttggcttg 47259 Query: 344 cgttcctgcccgtctttaggctgcaactggttcatttacagaatgagagacacctgaatt 403 || ||| |||| ||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 47260 cgctccggcccttctctaggctgcaactggttcatttacagaatgagaaacacccgaatt 47319 Query: 404 aacct 408 ||||| Sbjct: 47320 aacct 47324 Score = 105 bits (53), Expect = 2e-19 Identities = 83/93 (89%) Strand = Plus / Plus Query: 593 cttagcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaagctggt 652 |||||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 47874 cttagcaagtccatctccttcattttctgccaatgcttttgtattagccttaaagctggt 47933 Query: 653 cttaacaacacttacctcgaacccttcattatc 685 |||||||||||||| ||| || ||||| ||||| Sbjct: 47934 cttaacaacacttatctcaaatccttctttatc 47966 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| ||||||||||| || || || || ||||||||||||||||||||| Sbjct: 47417 accttggctgctttaaagagttcgtccagcacctcggacaatgttgggtgtgcatgaaca 47476 Query: 465 gcaa 468 |||| Sbjct: 47477 gcaa 47480
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 139 bits (70), Expect = 1e-29 Identities = 100/110 (90%) Strand = Plus / Minus Query: 485 acgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgcaaacc 544 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 13264332 acgagttccgagggcaatggcgtttgatgcctcgtggatgaggtcagcagcatgcaaacc 13264273 Query: 545 caagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatct 594 || |||||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct: 13264272 taatatgtgaactccaagaatttctccagtgtcaggccggtaaatcatct 13264223 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 588 atcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaag 647 |||| |||||||| ||||| |||||||| || |||| ||| || ||||| ||||| ||| Sbjct: 13264070 atcaccttagcaagtccatctccttcattctcagccagagccttcgtgtttgccttgaag 13264011 Query: 648 ctggtcttaacaacacttacctcgaacccttcattatc 685 ||||||||||||||||||| ||| || ||||| ||||| Sbjct: 13264010 ctggtcttaacaacacttatctcaaatccttccttatc 13263973 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||||||||||||||| || || || || ||||| || |||||||||||||||||| Sbjct: 13264479 accttggcagctttgaagagctcatccagaacctcagacaaagttgggtgtgcatgaaca 13264420 Query: 465 gcaa 468 |||| Sbjct: 13264419 gcaa 13264416 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 acaaagaaatgaaggcaaca 135 |||||||||||||||||||| Sbjct: 42301280 acaaagaaatgaaggcaaca 42301299
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 139 bits (70), Expect = 1e-29 Identities = 100/110 (90%) Strand = Plus / Minus Query: 485 acgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgcaaacc 544 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 4690 acgagttccgagggcaatggcgtttgatgcctcgtggatgaggtcagcagcatgcaaacc 4631 Query: 545 caagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatct 594 || |||||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct: 4630 taatatgtgaactccaagaatttctccagtgtcaggccggtaaatcatct 4581 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 588 atcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaag 647 |||| |||||||| ||||| |||||||| || |||| ||| || ||||| ||||| ||| Sbjct: 4428 atcaccttagcaagtccatctccttcattctcagccagagccttcgtgtttgccttgaag 4369 Query: 648 ctggtcttaacaacacttacctcgaacccttcattatc 685 ||||||||||||||||||| ||| || ||||| ||||| Sbjct: 4368 ctggtcttaacaacacttatctcaaatccttccttatc 4331 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||||||||||||||| || || || || ||||| || |||||||||||||||||| Sbjct: 4837 accttggcagctttgaagagctcatccagaacctcagacaaagttgggtgtgcatgaaca 4778 Query: 465 gcaa 468 |||| Sbjct: 4777 gcaa 4774
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 139 bits (70), Expect = 1e-29 Identities = 100/110 (90%) Strand = Plus / Minus Query: 485 acgagttcctagggcaatggcatttgatgcctcgtggatgaggtcagcagcgtgcaaacc 544 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 136633 acgagttccgagggcaatggcgtttgatgcctcgtggatgaggtcagcagcatgcaaacc 136574 Query: 545 caagatgtgaacgccgagaatttctcccgtgtcaggtcggtagatcatct 594 || |||||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct: 136573 taatatgtgaactccaagaatttctccagtgtcaggccggtaaatcatct 136524 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 588 atcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggccttaaag 647 |||| |||||||| ||||| |||||||| || |||| ||| || ||||| ||||| ||| Sbjct: 136371 atcaccttagcaagtccatctccttcattctcagccagagccttcgtgtttgccttgaag 136312 Query: 648 ctggtcttaacaacacttacctcgaacccttcattatc 685 ||||||||||||||||||| ||| || ||||| ||||| Sbjct: 136311 ctggtcttaacaacacttatctcaaatccttccttatc 136274 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||||||||||||||| || || || || ||||| || |||||||||||||||||| Sbjct: 136780 accttggcagctttgaagagctcatccagaacctcagacaaagttgggtgtgcatgaaca 136721 Query: 465 gcaa 468 |||| Sbjct: 136720 gcaa 136717
>gb|DQ083195.1| Oryza sativa (indica cultivar-group) clone 5S8A06 mRNA sequence Length = 386 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 360 taggctgcaactggttcatttacagaatgagagacacctgaattaaccttggcagctttg 419 |||||||| || || |||||||| ||||||| ||||||| ||||||||||||||||||| Sbjct: 117 taggctgcgacgggctcatttacggaatgaggaacacctgcattaaccttggcagctttg 58 Query: 420 aagagttcgtcgagtacttcagataatgttgggtgtgcatgaacagcaa 468 ||||| || || || || ||||| || |||||||||||||||||||||| Sbjct: 57 aagagctcatccagaacctcagacaaagttgggtgtgcatgaacagcaa 9
>ref|NM_112571.2| Arabidopsis thaliana LPD1 (LIPOAMIDE DEHYDROGENASE 1); FAD binding / dihydrolipoyl dehydrogenase/ disulfide oxidoreductase/ oxidoreductase AT3G16950 (LPD1) mRNA, complete cds Length = 2231 Score = 89.7 bits (45), Expect = 1e-14 Identities = 207/261 (79%) Strand = Plus / Minus Query: 404 aaccttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaac 463 ||||||||| |||||||| ||||||||||| || ||||| | |||||| ||||||||||| Sbjct: 1807 aaccttggctgctttgaacagttcgtcgaggacctcagagagtgttggatgtgcatgaac 1748 Query: 464 agcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggat 523 || | || | || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct: 1747 tgccaattttatgtcctgaatacgcgttcctagagcaatcgcattagaagcttcatggat 1688 Query: 524 gaggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcg 583 |||||||| || |||| || || || ||||| || | ||||| || |||||||||| Sbjct: 1687 aaggtcagctgcatgcagtccaaatatatgaactcctaagatttcaccattgtcaggtcg 1628 Query: 584 gtagatcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggcctt 643 ||| ||||||||||| || || || ||||||||||| || | || |||||||| ||||| Sbjct: 1627 gtatatcatcttagctattccttctccttcattttcagctagggcctttgtgttagcctt 1568 Query: 644 aaagctggtcttaacaacact 664 || || ||||| |||||||| Sbjct: 1567 gaaacttgtcttgacaacact 1547
>gb|AY120695.1| Arabidopsis thaliana AT3g16950/K14A17_7 mRNA, complete cds Length = 1713 Score = 89.7 bits (45), Expect = 1e-14 Identities = 207/261 (79%) Strand = Plus / Minus Query: 404 aaccttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaac 463 ||||||||| |||||||| ||||||||||| || ||||| | |||||| ||||||||||| Sbjct: 1665 aaccttggctgctttgaacagttcgtcgaggacctcagagagtgttggatgtgcatgaac 1606 Query: 464 agcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggat 523 || | || | || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct: 1605 tgccaattttatgtcctgaatacgcgttcctagagcaatcgcattagaagcttcatggat 1546 Query: 524 gaggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcg 583 |||||||| || |||| || || || ||||| || | ||||| || |||||||||| Sbjct: 1545 aaggtcagctgcatgcagtccaaatatatgaactcctaagatttcaccattgtcaggtcg 1486 Query: 584 gtagatcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggcctt 643 ||| ||||||||||| || || || ||||||||||| || | || |||||||| ||||| Sbjct: 1485 gtatatcatcttagctattccttctccttcattttcagctagggcctttgtgttagcctt 1426 Query: 644 aaagctggtcttaacaacact 664 || || ||||| |||||||| Sbjct: 1425 gaaacttgtcttgacaacact 1405
>gb|AY050376.1| Arabidopsis thaliana AT3g16950/K14A17_7 mRNA, complete cds Length = 2128 Score = 89.7 bits (45), Expect = 1e-14 Identities = 207/261 (79%) Strand = Plus / Minus Query: 404 aaccttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaac 463 ||||||||| |||||||| ||||||||||| || ||||| | |||||| ||||||||||| Sbjct: 1707 aaccttggctgctttgaacagttcgtcgaggacctcagagagtgttggatgtgcatgaac 1648 Query: 464 agcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggat 523 || | || | || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct: 1647 tgccaattttatgtcctgaatacgcgttcctagagcaatcgcattagaagcttcatggat 1588 Query: 524 gaggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcg 583 |||||||| || |||| || || || ||||| || | ||||| || |||||||||| Sbjct: 1587 aaggtcagctgcatgcagtccaaatatatgaactcctaagatttcaccattgtcaggtcg 1528 Query: 584 gtagatcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggcctt 643 ||| ||||||||||| || || || ||||||||||| || | || |||||||| ||||| Sbjct: 1527 gtatatcatcttagctattccttctccttcattttcagctagggcctttgtgttagcctt 1468 Query: 644 aaagctggtcttaacaacact 664 || || ||||| |||||||| Sbjct: 1467 gaaacttgtcttgacaacact 1447
>gb|AF228637.1|AF228637 Arabidopsis thaliana lipoamide dehydrogenase (lpd1) mRNA, complete cds; nuclear gene for chloroplast product Length = 2205 Score = 89.7 bits (45), Expect = 1e-14 Identities = 207/261 (79%) Strand = Plus / Minus Query: 404 aaccttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaac 463 ||||||||| |||||||| ||||||||||| || ||||| | |||||| ||||||||||| Sbjct: 1771 aaccttggctgctttgaacagttcgtcgaggacctcagagagtgttggatgtgcatgaac 1712 Query: 464 agcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggat 523 || | || | || || | ||| |||||||| ||||| ||||| || || || ||||| Sbjct: 1711 tgccaattttatgtcctgaatacgcgttcctagagcaatcgcattagaagcttcatggat 1652 Query: 524 gaggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcg 583 |||||||| || |||| || || || ||||| || | ||||| || |||||||||| Sbjct: 1651 aaggtcagctgcatgcagtccaaatatatgaactcctaagatttcaccattgtcaggtcg 1592 Query: 584 gtagatcatcttagcaataccatcgccttcattttctgccaaagcttttgtgttggcctt 643 ||| ||||||||||| || || || ||||||||||| || | || |||||||| ||||| Sbjct: 1591 gtatatcatcttagctattccttctccttcattttcagctagggcctttgtgttagcctt 1532 Query: 644 aaagctggtcttaacaacact 664 || || ||||| |||||||| Sbjct: 1531 gaaacttgtcttgacaacact 1511
>ref|NM_117711.3| Arabidopsis thaliana FAD binding / disulfide oxidoreductase/ oxidoreductase AT4G16155 mRNA, complete cds Length = 2033 Score = 85.7 bits (43), Expect = 2e-13 Identities = 172/215 (80%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 1784 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 1725 Query: 465 gcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatg 524 ||||| || | || || | ||| ||||||| ||||| || |||||||| || ||||| Sbjct: 1724 gcaagttttatgtcctgaatacgtgttcctaaagcaatcgcgtttgatgcttcatggata 1665 Query: 525 aggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcgg 584 || |||||||| ||||| || || || ||||| || || ||||| || ||||||||| | Sbjct: 1664 agatcagcagcatgcaatccaaatatatgaactccaaggatttcaccattgtcaggtctg 1605 Query: 585 tagatcatcttagcaataccatcgccttcattttc 619 || ||||||||||| | || || ||||||||||| Sbjct: 1604 tatatcatcttagcgagtccttctccttcattttc 1570
>gb|AY113958.1| Arabidopsis thaliana unknown protein (At4g16155) mRNA, complete cds Length = 1735 Score = 85.7 bits (43), Expect = 2e-13 Identities = 172/215 (80%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 1655 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 1596 Query: 465 gcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatg 524 ||||| || | || || | ||| ||||||| ||||| || |||||||| || ||||| Sbjct: 1595 gcaagttttatgtcctgaatacgtgttcctaaagcaatcgcgtttgatgcttcatggata 1536 Query: 525 aggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcgg 584 || |||||||| ||||| || || || ||||| || || ||||| || ||||||||| | Sbjct: 1535 agatcagcagcatgcaatccaaatatatgaactccaaggatttcaccattgtcaggtctg 1476 Query: 585 tagatcatcttagcaataccatcgccttcattttc 619 || ||||||||||| | || || ||||||||||| Sbjct: 1475 tatatcatcttagcgagtccttctccttcattttc 1441
>gb|AY050877.1| Arabidopsis thaliana unknown protein (At4g16155) mRNA, complete cds Length = 1986 Score = 85.7 bits (43), Expect = 2e-13 Identities = 172/215 (80%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 1722 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 1663 Query: 465 gcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatg 524 ||||| || | || || | ||| ||||||| ||||| || |||||||| || ||||| Sbjct: 1662 gcaagttttatgtcctgaatacgtgttcctaaagcaatcgcgtttgatgcttcatggata 1603 Query: 525 aggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcgg 584 || |||||||| ||||| || || || ||||| || || ||||| || ||||||||| | Sbjct: 1602 agatcagcagcatgcaatccaaatatatgaactccaaggatttcaccattgtcaggtctg 1543 Query: 585 tagatcatcttagcaataccatcgccttcattttc 619 || ||||||||||| | || || ||||||||||| Sbjct: 1542 tatatcatcttagcgagtccttctccttcattttc 1508
>gb|AY054195.1| Arabidopsis thaliana AT3g16950/K14A17_7 mRNA, complete cds Length = 1981 Score = 85.7 bits (43), Expect = 2e-13 Identities = 172/215 (80%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 1725 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 1666 Query: 465 gcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatg 524 ||||| || | || || | ||| ||||||| ||||| || |||||||| || ||||| Sbjct: 1665 gcaagttttatgtcctgaatacgtgttcctaaagcaatcgcgtttgatgcttcatggata 1606 Query: 525 aggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcgg 584 || |||||||| ||||| || || || ||||| || || ||||| || ||||||||| | Sbjct: 1605 agatcagcagcatgcaatccaaatatatgaactccaaggatttcaccattgtcaggtctg 1546 Query: 585 tagatcatcttagcaataccatcgccttcattttc 619 || ||||||||||| | || || ||||||||||| Sbjct: 1545 tatatcatcttagcgagtccttctccttcattttc 1511
>gb|AF228638.1|AF228638 Arabidopsis thaliana lipoamide dehydrogenase (lpd2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1840 Score = 85.7 bits (43), Expect = 2e-13 Identities = 172/215 (80%) Strand = Plus / Minus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 1662 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 1603 Query: 465 gcaagcttaagttcttgcaaacgagttcctagggcaatggcatttgatgcctcgtggatg 524 ||||| || | || || | ||| ||||||| ||||| || |||||||| || ||||| Sbjct: 1602 gcaagttttatgtcctgaatacgtgttcctaaagcaatcgcgtttgatgcttcatggata 1543 Query: 525 aggtcagcagcgtgcaaacccaagatgtgaacgccgagaatttctcccgtgtcaggtcgg 584 || |||||||| ||||| || || || ||||| || || ||||| || ||||||||| | Sbjct: 1542 agatcagcagcatgcaatccaaatatatgaactccaaggatttcaccattgtcaggtctg 1483 Query: 585 tagatcatcttagcaataccatcgccttcattttc 619 || ||||||||||| | || || ||||||||||| Sbjct: 1482 tatatcatcttagcgagtccttctccttcattttc 1448
>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17 Length = 92620 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaac 463 |||||||| |||||||| ||||||||||| || ||||| | |||||| ||||||||||| Sbjct: 18734 accttggctgctttgaacagttcgtcgaggacctcagagagtgttggatgtgcatgaac 18792
>emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5 Length = 209164 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 120370 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 120429 Query: 465 gcaag 469 ||||| Sbjct: 120430 gcaag 120434
>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43 Length = 198226 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 405 accttggcagctttgaagagttcgtcgagtacttcagataatgttgggtgtgcatgaaca 464 |||||||| ||||| || |||||||| | |||||||| | |||||| |||||||||||| Sbjct: 89360 accttggctgctttaaacagttcgtctacaacttcagacagtgttggatgtgcatgaaca 89419 Query: 465 gcaag 469 ||||| Sbjct: 89420 gcaag 89424
>emb|X17482.1|ACSHS Anabaena cylindrica gene for soluble hydrogenase subunit Length = 7237 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 594 ttagcaataccatcgccttcattttctgccaaagcttt 631 |||||||||||||| |||| ||||||||||||||||| Sbjct: 1012 ttagcaataccatcagcttcgttttctgccaaagcttt 975
>gb|BT013553.1| Lycopersicon esculentum clone 132290R, mRNA sequence Length = 2204 Score = 46.1 bits (23), Expect = 0.15 Identities = 113/143 (79%) Strand = Plus / Minus Query: 501 atggcatttgatgcctcgtggatgaggtcagcagcgtgcaaacccaagatgtgaacgccg 560 ||||| || ||||| || || |||||||||||||| |||| || || |||||||| ||| Sbjct: 1712 atggcgttggatgcttcatgaatgaggtcagcagcatgcattccaaaaatgtgaacaccg 1653 Query: 561 agaatttctcccgtgtcaggtcggtagatcatcttagcaataccatcgccttcattttct 620 || || || || |||| |||| || |||| ||| |||| || || ||||||||||| Sbjct: 1652 aggatctccccactgtcgggtctatatatcaactttgcaagtccctccccttcattttca 1593 Query: 621 gccaaagcttttgtgttggcctt 643 || | ||||||||||||||||| Sbjct: 1592 gcaagggcttttgtgttggcctt 1570
>gb|AC126778.9| Medicago truncatula clone mth2-32j21, complete sequence Length = 110448 Score = 46.1 bits (23), Expect = 0.15 Identities = 65/79 (82%) Strand = Plus / Plus Query: 504 gcatttgatgcctcgtggatgaggtcagcagcgtgcaaacccaagatgtgaacgccgaga 563 |||||||| |||||||||||||| || ||||| ||||| || || || ||||| || || Sbjct: 108075 gcatttgaagcctcgtggatgagatctgcagcatgcaacccaaatatatgaactcctagt 108134 Query: 564 atttctcccgtgtcaggtc 582 || ||||| ||||||||| Sbjct: 108135 atctctccgttgtcaggtc 108153
>gb|AC149491.2| Medicago truncatula chromosome 2 BAC clone mth2-46o19, complete sequence Length = 106587 Score = 46.1 bits (23), Expect = 0.15 Identities = 65/79 (82%) Strand = Plus / Plus Query: 504 gcatttgatgcctcgtggatgaggtcagcagcgtgcaaacccaagatgtgaacgccgaga 563 |||||||| |||||||||||||| || ||||| ||||| || || || ||||| || || Sbjct: 6770 gcatttgaagcctcgtggatgagatctgcagcatgcaacccaaatatatgaactcctagt 6829 Query: 564 atttctcccgtgtcaggtc 582 || ||||| ||||||||| Sbjct: 6830 atctctccgttgtcaggtc 6848
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 409 tggcagctttgaagagttcgtcgagt 434 |||||||||||| ||||||||||||| Sbjct: 494873 tggcagctttgatgagttcgtcgagt 494848
>gb|AC107798.10| Mus musculus chromosome 8, clone RP23-4D24, complete sequence Length = 234420 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 97 caactcaataggtgaaataacaaagaaat 125 ||||||||||||| ||| ||||||||||| Sbjct: 13759 caactcaataggttaaaaaacaaagaaat 13731
>emb|Z81457.1|CEC01G12 Caenorhabditis elegans Cosmid C01G12, complete sequence Length = 36609 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 616 tttctgccaaagcttttgtgttggc 640 |||||||||||| |||||||||||| Sbjct: 30801 tttctgccaaagtttttgtgttggc 30777
>gb|AC110255.10| Mus musculus, clone RP23-274K7, complete sequence Length = 170587 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 97 caactcaataggtgaaataacaaagaaat 125 ||||||||||||| ||| ||||||||||| Sbjct: 35932 caactcaataggttaaaaaacaaagaaat 35904
>emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on chromosome 11 Contains a novel gene (2210415F13Rik), an NADH dehydrogenase (ubiquinone) Fe-S protein 3 (Ndufs3) pseudogene, a novel pseudogene, a novel gene (1810065E05Rik), a novel gene similar to rat solute carrier family 11 member 1 (Slc11a1), a novel gene, the Olfr30 gene for olfactory receptor 30, an olfactory receptor (MOR284-1P) pseudogene, the gene for olfactory receptor MOR284-2 (LOC216774), a novel gene similar to MOR275 (LOC193140), a ribosomal protein L24 (Rpl24) pseudogene, the gene for olfactory receptor MOR275-1, a DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5) pseudogene, an olfactory receptor (MOR275-3) pseudogene and a CpG island, complete sequence Length = 191700 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 aataggtgaaataacaaagaa 123 ||||||||||||||||||||| Sbjct: 128351 aataggtgaaataacaaagaa 128331
>emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86L3, complete sequence Length = 154099 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 637 tggccttaaagctggtcttaa 657 ||||||||||||||||||||| Sbjct: 42273 tggccttaaagctggtcttaa 42253
>emb|AL713897.7| Mouse DNA sequence from clone RP23-373J8 on chromosome X, complete sequence Length = 166240 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 tggttcatttacagaatgaga 391 ||||||||||||||||||||| Sbjct: 153666 tggttcatttacagaatgaga 153646
>gb|AC154052.1| Drosophila melanogaster clone BACR01B21, complete sequence Length = 167163 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 acaaaatgtgtaactatttt 199 |||||||||||||||||||| Sbjct: 95855 acaaaatgtgtaactatttt 95836
>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete sequence Length = 218177 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 5990 tgaaggcaacaagaaccaaa 6009
>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence Length = 187629 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 135150 agataatgttgggtgtgcat 135169 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 112493 agataatgttgggtgtgcat 112474
>gb|AC132297.4| Mus musculus chromosome 7 clone RP24-330M18, complete sequence Length = 152941 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 60327 tgaaggcaacaagaaccaaa 60308
>gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, complete sequence Length = 227026 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tgaaataacaaagaaatgaa 128 |||||||||||||||||||| Sbjct: 120188 tgaaataacaaagaaatgaa 120207
>gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196723 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gtgtgcatgaacagcaagct 471 |||||||||||||||||||| Sbjct: 21041 gtgtgcatgaacagcaagct 21060
>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence Length = 209207 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 82366 agataatgttgggtgtgcat 82385 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 59709 agataatgttgggtgtgcat 59690
>emb|AL032645.1|CEY67A6A Caenorhabditis elegans YAC Y67A6A, complete sequence Length = 27185 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gaaatgaaggcaacaagaac 140 |||||||||||||||||||| Sbjct: 677 gaaatgaaggcaacaagaac 696
>gb|AC098723.3| Mus musculus BAC clone RP23-3D10 from 7, complete sequence Length = 227968 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 172469 tgaaggcaacaagaaccaaa 172488
>ref|XM_722616.1| Plasmodium yoelii yoelii str. 17XNL rhoptry protein (PY06945) partial mRNA Length = 6011 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 aaaatgtgtaactatttttt 201 |||||||||||||||||||| Sbjct: 4504 aaaatgtgtaactatttttt 4485
>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence Length = 170201 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 117538 agataatgttgggtgtgcat 117557 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 94885 agataatgttgggtgtgcat 94866
>gb|AC142301.1| Pan troglodytes BAC clone RP43-127N2 from Y, complete sequence Length = 108043 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 71480 agataatgttgggtgtgcat 71499 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 48823 agataatgttgggtgtgcat 48804
>gb|AC139193.1| Pan troglodytes BAC clone RP43-131F11 from Y, complete sequence Length = 36650 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 35975 agataatgttgggtgtgcat 35994 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 13319 agataatgttgggtgtgcat 13300
>emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chromosome 6 Contains a novel gene, complete sequence Length = 88711 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 tcaataggtgaaataacaaagaaa 124 ||||||||||||| |||||||||| Sbjct: 32561 tcaataggtgaaagaacaaagaaa 32538
>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the 5' end of the SLIT1 gene for slit homolog 1 (Drosophila), a novel gene and a CpG island, complete sequence Length = 172510 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttcctgcccgtctttaggc 364 |||||||||||||||||||| Sbjct: 13601 gttcctgcccgtctttaggc 13620
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 tgctcgcgttcctgcccgtc 357 |||||||||||||||||||| Sbjct: 639191 tgctcgcgttcctgcccgtc 639172
>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3 Contains the 5' end of the F13A1 gene for coagulation factor XIII A chain precursor, a SNAP19 (sRNA activating protein complex 19kDa subunit) pseudogene and two putative novel gene, complete sequence Length = 147038 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aacaaagaaatgaaggcaac 134 |||||||||||||||||||| Sbjct: 117630 aacaaagaaatgaaggcaac 117649
>emb|AJ404872.2|CCR404872 Caiman crocodylus complete mitochondrial genome Length = 17900 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 666 acctcgaacccttcattatc 685 |||||||||||||||||||| Sbjct: 1634 acctcgaacccttcattatc 1653
>emb|AL157811.1|SPAC186 S.pombe chromosome I cosmid c186 Length = 30176 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 cattttctgccaaagctttt 632 |||||||||||||||||||| Sbjct: 5996 cattttctgccaaagctttt 6015
>emb|CR749745.16| Zebrafish DNA sequence from clone DKEY-7O20 in linkage group 5, complete sequence Length = 110199 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gtaatgaaactaagggcctt 312 |||||||||||||||||||| Sbjct: 48166 gtaatgaaactaagggcctt 48185
>gb|AC069458.2| Drosophila melanogaster 3L BAC RP98-23N10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169863 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 acaaaatgtgtaactatttt 199 |||||||||||||||||||| Sbjct: 168058 acaaaatgtgtaactatttt 168077
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 11288537 agataatgttgggtgtgcat 11288556 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 11265880 agataatgttgggtgtgcat 11265861 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 3397137 agataatgttgggtgtgcat 3397156 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 3374480 agataatgttgggtgtgcat 3374461 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 3309856 agataatgttgggtgtgcat 3309837
>dbj|AK159260.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420013F22 product:ring finger protein 121, full insert sequence Length = 2242 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 2169 tgaaggcaacaagaaccaaa 2188
>dbj|AK159032.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K530038F17 product:ring finger protein 121, full insert sequence Length = 2345 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 2280 tgaaggcaacaagaaccaaa 2299
>dbj|AK168821.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920057P05 product:ring finger protein 121, full insert sequence Length = 2235 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 2156 tgaaggcaacaagaaccaaa 2175
>gb|DP000002.1| Sminthopsis macroura target 1 genomic scaffold Length = 305394 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 taaccttggcagctttgaag 422 |||||||||||||||||||| Sbjct: 116638 taaccttggcagctttgaag 116619
>dbj|AK169089.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920079L04 product:ring finger protein 121, full insert sequence Length = 2235 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 2156 tgaaggcaacaagaaccaaa 2175
>ref|NM_001020451.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC186.02c), partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 cattttctgccaaagctttt 632 |||||||||||||||||||| Sbjct: 202 cattttctgccaaagctttt 183
>dbj|AK078509.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820427D03 product:hypothetical RING finger containing protein, full insert sequence Length = 2177 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 2104 tgaaggcaacaagaaccaaa 2123
>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete sequence Length = 170833 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 161762 agataatgttgggtgtgcat 161781 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 139105 agataatgttgggtgtgcat 139086
>gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y, complete sequence Length = 103356 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 98526 agataatgttgggtgtgcat 98545 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 75860 agataatgttgggtgtgcat 75841
>gb|AC053490.2|AC053490 Homo sapiens BAC clone RP11-140H23 from Y, complete sequence Length = 103432 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 84956 agataatgttgggtgtgcat 84975 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 62291 agataatgttgggtgtgcat 62272
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 acaaagaaatgaaggcaaca 135 |||||||||||||||||||| Sbjct: 73237 acaaagaaatgaaggcaaca 73256
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 3024103 agataatgttgggtgtgcat 3024122 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 3001437 agataatgttgggtgtgcat 3001418 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 1409717 agataatgttgggtgtgcat 1409736 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 1387052 agataatgttgggtgtgcat 1387033
>gb|AC123968.2| Sminthopsis macroura clone 284J17, complete sequence Length = 61023 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 taaccttggcagctttgaag 422 |||||||||||||||||||| Sbjct: 6820 taaccttggcagctttgaag 6801
>emb|CR855380.7| Zebrafish DNA sequence from clone CH211-253G6 in linkage group 18, complete sequence Length = 71474 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 acttcagataatgttgggtgtgca 458 ||||||||||||||||| |||||| Sbjct: 19180 acttcagataatgttggttgtgca 19203
>gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I14 from Deleted in Azoospermia (DAZ) locus Length = 85674 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agataatgttgggtgtgcat 459 |||||||||||||||||||| Sbjct: 2392 agataatgttgggtgtgcat 2411
>gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69 of 83 of the complete sequence Length = 305312 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 acaaaatgtgtaactatttt 199 |||||||||||||||||||| Sbjct: 301388 acaaaatgtgtaactatttt 301407
>dbj|AB093583.1| Pseudomonas sp. B11-1 PsEst1 gene for esterase, complete cds Length = 1914 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 ggtcagcagcgtgcaaaccc 545 |||||||||||||||||||| Sbjct: 543 ggtcagcagcgtgcaaaccc 562
>emb|CT010588.10| Mouse DNA sequence from clone RP23-150H18 on chromosome 12, complete sequence Length = 158004 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 619 ctgccaaagcttttgtgttg 638 |||||||||||||||||||| Sbjct: 30886 ctgccaaagcttttgtgttg 30905
>gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, complete sequence Length = 148006 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gtgtgcatgaacagcaagct 471 |||||||||||||||||||| Sbjct: 48139 gtgtgcatgaacagcaagct 48158
>gb|AC140403.3| Mus musculus BAC clone RP23-144M22 from 15, complete sequence Length = 192144 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aaataacaaagaaatgaagg 130 |||||||||||||||||||| Sbjct: 105558 aaataacaaagaaatgaagg 105577
>gb|AC150275.2| Mus musculus BAC clone RP23-409M16 from 7, complete sequence Length = 224935 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tgaaggcaacaagaaccaaa 144 |||||||||||||||||||| Sbjct: 156905 tgaaggcaacaagaaccaaa 156886
>emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on chromosome 17, complete sequence Length = 122522 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 aagagaggctggggtggatg 333 |||||||||||||||||||| Sbjct: 112918 aagagaggctggggtggatg 112937
>gb|AC115744.9| Mus musculus chromosome 12, clone RP23-479M19, complete sequence Length = 211776 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 619 ctgccaaagcttttgtgttg 638 |||||||||||||||||||| Sbjct: 88757 ctgccaaagcttttgtgttg 88776 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,329,052 Number of Sequences: 3902068 Number of extensions: 6329052 Number of successful extensions: 121612 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 121187 Number of HSP's gapped (non-prelim): 417 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
