ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
114KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 87 5e-17
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 78 2e-14
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 66 7e-11
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 54 3e-07
5ODFP_RAT (P21769) Outer dense fiber protein (Protein RT7) (RTS 5/1) 33 0.48
6ODFP_MOUSE (Q61999) Outer dense fiber protein 33 0.48
7ODFP_HUMAN (Q14990) Outer dense fiber protein 32 1.4
8C71BO_ARATH (Q9LTL8) Cytochrome P450 71B24 (EC 1.14.-.-) 30 6.9

>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 86.7 bits (213), Expect = 5e-17
 Identities = 37/54 (68%), Positives = 47/54 (87%)
 Frame = -1

Query: 597 PCCTLIQGLADLKAXVCLCTALKANILGINLNVPIDLSLLVNYCGKNVPAGFQC 436
           PCC+L++GL +L+A VCLCTA+KANILG NLN+PI LSL++N CGK VP GF+C
Sbjct: 83  PCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 31/55 (56%), Positives = 43/55 (78%)
 Frame = -1

Query: 594 CCTLIQGLADLKAXVCLCTALKANILGINLNVPIDLSLLVNYCGKNVPAGFQCPS 430
           CC L++GL DL A +CLCTA+KAN+LGI+LNVP+ L+ ++N CG+  P  F CP+
Sbjct: 75  CCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTCPN 129



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 27/55 (49%), Positives = 38/55 (69%)
 Frame = -1

Query: 594 CCTLIQGLADLKAXVCLCTALKANILGINLNVPIDLSLLVNYCGKNVPAGFQCPS 430
           CC L+ GL DL A +CLCT ++  +L IN+ +PI L +L++ CGK  P  F+CPS
Sbjct: 291 CCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = -1

Query: 594 CCTLIQGLADLKAXVCLCTALKANILGINLNVPIDLSLLVNYCGKNVPAGFQCP 433
           CC LI GL D++A VCLC  L+A  LGI LN+  +L L++N CG++ P+   CP
Sbjct: 28  CCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>ODFP_RAT (P21769) Outer dense fiber protein (Protein RT7) (RTS 5/1)|
          Length = 245

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 329 IHPWTSTDLQLVVYVICFIIYHRSC*FC*ALHMCVACTYLCVW*YRLYC 183
           +HP+   DL    Y +C+    RSC  C   + C  C       Y+LYC
Sbjct: 41  MHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCD------YKLYC 83



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>ODFP_MOUSE (Q61999) Outer dense fiber protein|
          Length = 247

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 329 IHPWTSTDLQLVVYVICFIIYHRSC*FC*ALHMCVACTYLCVW*YRLYC 183
           +HP+   DL    Y +C+    RSC  C   + C  C       Y+LYC
Sbjct: 41  MHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCD------YKLYC 83



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>ODFP_HUMAN (Q14990) Outer dense fiber protein|
          Length = 250

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 329 IHPWTSTDLQLVVYVICFIIYHRSC*FC*ALHMCVACTYLCVW*YRLYC 183
           +HP+   DL    Y +C+    RSC  C  L+ C  C       Y+LYC
Sbjct: 41  MHPYCCCDLHPYPYCLCYSKRSRSCGLC-DLYPCCLCD------YKLYC 82



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>C71BO_ARATH (Q9LTL8) Cytochrome P450 71B24 (EC 1.14.-.-)|
          Length = 498

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 376 LYYVRTYAHACMHDLQSIHGLVLI 305
           LY +R   H C+HDL   HG VL+
Sbjct: 39  LYQLRGLFHKCLHDLSKKHGPVLL 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,171,925
Number of Sequences: 219361
Number of extensions: 1436113
Number of successful extensions: 3252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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