ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
2dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
3gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 111 1e-21
4gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome... 111 1e-21
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
6gb|AY112495.1| Zea mays CL38436_1 mRNA sequence 105 8e-20
7dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 48 0.016
8gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromo... 48 0.016
9emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chr... 44 0.26
10gb|AC005874.3|AC005874 citb_175_g_20, complete sequence 44 0.26
11gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Co... 44 0.26
12gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 4.0
13gb|AC131983.11| Mus musculus chromosome 7, clone RP24-173C11, co... 40 4.0
14emb|AL732507.6| Mouse DNA sequence from clone RP23-67E13 on chro... 40 4.0

>dbj|AK101078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024C12, full
            insert sequence
          Length = 2350

 Score =  157 bits (79), Expect = 2e-35
 Identities = 141/163 (86%)
 Strand = Plus / Minus

                                                                        
Query: 139  attgccatgggttcttcttccgccccgctgcaagcgtcgaactagttttggcactagatt 198
            ||||||||||||||||||| || ||||| |||  ||| || |||| |||||  | |||||
Sbjct: 2053 attgccatgggttcttctttcggcccgccgcattcgttgagctagctttggagccagatt 1994

                                                                        
Query: 199  tcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaatccgga 258
            |||||||||||||||||||||      | ||||||||||||||||||||||| || ||||
Sbjct: 1993 tcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatatacgga 1934

                                                       
Query: 259  ccatccagtgatgggttgtgaaaacctactcaaaatgtgttag 301
            |||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 1933 ccatccagtggtgggttgtgaaaacctcctcaaaatgtgttag 1891



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 62   ttctagttcttttgagctt-ggtgcagttgagcta 95
            ||||||||||||||||||| | |||||||||||||
Sbjct: 2139 ttctagttcttttgagcttagttgcagttgagcta 2105



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>dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L06, full
            insert sequence
          Length = 2758

 Score =  157 bits (79), Expect = 2e-35
 Identities = 141/163 (86%)
 Strand = Plus / Minus

                                                                        
Query: 139  attgccatgggttcttcttccgccccgctgcaagcgtcgaactagttttggcactagatt 198
            ||||||||||||||||||| || ||||| |||  ||| || |||| |||||  | |||||
Sbjct: 2430 attgccatgggttcttctttcggcccgccgcattcgttgagctagctttggagccagatt 2371

                                                                        
Query: 199  tcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaatccgga 258
            |||||||||||||||||||||      | ||||||||||||||||||||||| || ||||
Sbjct: 2370 tcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatatacgga 2311

                                                       
Query: 259  ccatccagtgatgggttgtgaaaacctactcaaaatgtgttag 301
            |||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 2310 ccatccagtggtgggttgtgaaaacctcctcaaaatgtgttag 2268



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 62   ttctagttcttttgagctt-ggtgcagttgagcta 95
            ||||||||||||||||||| | |||||||||||||
Sbjct: 2516 ttctagttcttttgagcttagttgcagttgagcta 2482



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>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
              complete sequence
          Length = 169073

 Score =  111 bits (56), Expect = 1e-21
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                          
Query: 194    agatttcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaat 253
              ||||||||||||||||||||||||||      | ||||||||||||||||||||||| ||
Sbjct: 127795 agatttcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatat 127854

                                              
Query: 254    ccggaccatccagtgatgggttgtgaaaacct 285
               |||||||||||||| ||||||||||||||||
Sbjct: 127855 acggaccatccagtggtgggttgtgaaaacct 127886



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                 
Query: 62     ttctagttcttttgagctt-ggtgcagttgagcta 95
              ||||||||||||||||||| | |||||||||||||
Sbjct: 127562 ttctagttcttttgagcttagttgcagttgagcta 127596



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 139    attgccatgggttcttcttccgccccgc 166
              ||||||||||||||||||| || |||||
Sbjct: 127648 attgccatgggttcttctttcggcccgc 127675



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>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07,
             complete sequence
          Length = 147122

 Score =  111 bits (56), Expect = 1e-21
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                         
Query: 194   agatttcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaat 253
             ||||||||||||||||||||||||||      | ||||||||||||||||||||||| ||
Sbjct: 23757 agatttcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatat 23816

                                             
Query: 254   ccggaccatccagtgatgggttgtgaaaacct 285
              |||||||||||||| ||||||||||||||||
Sbjct: 23817 acggaccatccagtggtgggttgtgaaaacct 23848



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                
Query: 62    ttctagttcttttgagctt-ggtgcagttgagcta 95
             ||||||||||||||||||| | |||||||||||||
Sbjct: 23524 ttctagttcttttgagcttagttgcagttgagcta 23558



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 139   attgccatgggttcttcttccgccccgc 166
             ||||||||||||||||||| || |||||
Sbjct: 23610 attgccatgggttcttctttcggcccgc 23637



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 1e-21
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                            
Query: 194      agatttcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaat 253
                ||||||||||||||||||||||||||      | ||||||||||||||||||||||| ||
Sbjct: 25611388 agatttcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatat 25611447

                                                
Query: 254      ccggaccatccagtgatgggttgtgaaaacct 285
                 |||||||||||||| ||||||||||||||||
Sbjct: 25611448 acggaccatccagtggtgggttgtgaaaacct 25611479



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                   
Query: 62       ttctagttcttttgagctt-ggtgcagttgagcta 95
                ||||||||||||||||||| | |||||||||||||
Sbjct: 25611155 ttctagttcttttgagcttagttgcagttgagcta 25611189



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 139      attgccatgggttcttcttccgccccgc 166
                ||||||||||||||||||| || |||||
Sbjct: 25611241 attgccatgggttcttctttcggcccgc 25611268



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>gb|AY112495.1| Zea mays CL38436_1 mRNA sequence
          Length = 888

 Score =  105 bits (53), Expect = 8e-20
 Identities = 127/153 (83%)
 Strand = Plus / Plus

                                                                       
Query: 153 ttcttccgccccgctgcaagcgtcgaactagttttggcactagatttcaacttcttcaac 212
           ||||| ||||| || ||||| || | ||||||||||||||| |  ||||||||||||| |
Sbjct: 507 ttctttcgccctgccgcaagtgtgggactagttttggcactggccttcaacttcttcagc 566

                                                                       
Query: 213 ttgccccnnnttntgttcttttgaggtttcagtttataaatccggaccatccagtgatgg 272
           ||||| |      ||||||| || |||||||||||||| || ||||||||||| || |||
Sbjct: 567 ttgcctcgaaccctgttcttctggggtttcagtttatatatgcggaccatccaatggtgg 626

                                            
Query: 273 gttgtgaaaacctactcaaaatgtgttagcttg 305
           ||||| || |||| |||||||||||||||||||
Sbjct: 627 gttgtaaatacctcctcaaaatgtgttagcttg 659



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 40  tctctaatctagttctgtagtattctagttc 70
           ||||||||||||||||||||| |||| ||||
Sbjct: 399 tctctaatctagttctgtagttttctggttc 429



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>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete
              sequence
          Length = 227942

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 98     atatcaagtctctcatgtaaaatg 121
              ||||||||||||||||||||||||
Sbjct: 191409 atatcaagtctctcatgtaaaatg 191386



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>gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromosome unknown, complete
              sequence
          Length = 163279

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 98     atatcaagtctctcatgtaaaatg 121
              ||||||||||||||||||||||||
Sbjct: 152426 atatcaagtctctcatgtaaaatg 152449



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>emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chromosome 10q25.2-26.2
             Contains the 5' end of a novel gene, the 5' end of the
             SAC2 gene for Sac domain-containing inositol phosphatase 2
             and three CpG islands, complete sequence
          Length = 114244

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 101   tcaagtctctcatgtaaaatgg 122
             ||||||||||||||||||||||
Sbjct: 96930 tcaagtctctcatgtaaaatgg 96909



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>gb|AC005874.3|AC005874 citb_175_g_20, complete sequence
          Length = 177750

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 101    tcaagtctctcatgtaaaatgg 122
              ||||||||||||||||||||||
Sbjct: 168072 tcaagtctctcatgtaaaatgg 168051



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>gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Contig902E_1999.01.14,
              complete sequence
          Length = 177747

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 101    tcaagtctctcatgtaaaatgg 122
              ||||||||||||||||||||||
Sbjct: 168069 tcaagtctctcatgtaaaatgg 168048



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ctcatgtaaaatggaacatt 128
              ||||||||||||||||||||
Sbjct: 560476 ctcatgtaaaatggaacatt 560495



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>gb|AC131983.11| Mus musculus chromosome 7, clone RP24-173C11, complete sequence
          Length = 158500

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    ttcttttgaggtttcagttt 247
              ||||||||||||||||||||
Sbjct: 116724 ttcttttgaggtttcagttt 116705



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>emb|AL732507.6| Mouse DNA sequence from clone RP23-67E13 on chromosome 2, complete
              sequence
          Length = 197132

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    atggaacattgtttctcttc 138
              ||||||||||||||||||||
Sbjct: 108273 atggaacattgtttctcttc 108292


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,785,451
Number of Sequences: 3902068
Number of extensions: 2785451
Number of successful extensions: 59187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59112
Number of HSP's gapped (non-prelim): 75
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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