| Clone Name | rbags36n02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024C12, full insert sequence Length = 2350 Score = 157 bits (79), Expect = 2e-35 Identities = 141/163 (86%) Strand = Plus / Minus Query: 139 attgccatgggttcttcttccgccccgctgcaagcgtcgaactagttttggcactagatt 198 ||||||||||||||||||| || ||||| ||| ||| || |||| ||||| | ||||| Sbjct: 2053 attgccatgggttcttctttcggcccgccgcattcgttgagctagctttggagccagatt 1994 Query: 199 tcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaatccgga 258 ||||||||||||||||||||| | ||||||||||||||||||||||| || |||| Sbjct: 1993 tcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatatacgga 1934 Query: 259 ccatccagtgatgggttgtgaaaacctactcaaaatgtgttag 301 |||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 1933 ccatccagtggtgggttgtgaaaacctcctcaaaatgtgttag 1891 Score = 46.1 bits (23), Expect = 0.065 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 62 ttctagttcttttgagctt-ggtgcagttgagcta 95 ||||||||||||||||||| | ||||||||||||| Sbjct: 2139 ttctagttcttttgagcttagttgcagttgagcta 2105
>dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L06, full insert sequence Length = 2758 Score = 157 bits (79), Expect = 2e-35 Identities = 141/163 (86%) Strand = Plus / Minus Query: 139 attgccatgggttcttcttccgccccgctgcaagcgtcgaactagttttggcactagatt 198 ||||||||||||||||||| || ||||| ||| ||| || |||| ||||| | ||||| Sbjct: 2430 attgccatgggttcttctttcggcccgccgcattcgttgagctagctttggagccagatt 2371 Query: 199 tcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaatccgga 258 ||||||||||||||||||||| | ||||||||||||||||||||||| || |||| Sbjct: 2370 tcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatatacgga 2311 Query: 259 ccatccagtgatgggttgtgaaaacctactcaaaatgtgttag 301 |||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 2310 ccatccagtggtgggttgtgaaaacctcctcaaaatgtgttag 2268 Score = 46.1 bits (23), Expect = 0.065 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 62 ttctagttcttttgagctt-ggtgcagttgagcta 95 ||||||||||||||||||| | ||||||||||||| Sbjct: 2516 ttctagttcttttgagcttagttgcagttgagcta 2482
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 111 bits (56), Expect = 1e-21 Identities = 82/92 (89%) Strand = Plus / Plus Query: 194 agatttcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaat 253 |||||||||||||||||||||||||| | ||||||||||||||||||||||| || Sbjct: 127795 agatttcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatat 127854 Query: 254 ccggaccatccagtgatgggttgtgaaaacct 285 |||||||||||||| |||||||||||||||| Sbjct: 127855 acggaccatccagtggtgggttgtgaaaacct 127886 Score = 46.1 bits (23), Expect = 0.065 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 62 ttctagttcttttgagctt-ggtgcagttgagcta 95 ||||||||||||||||||| | ||||||||||||| Sbjct: 127562 ttctagttcttttgagcttagttgcagttgagcta 127596 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 attgccatgggttcttcttccgccccgc 166 ||||||||||||||||||| || ||||| Sbjct: 127648 attgccatgggttcttctttcggcccgc 127675
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 111 bits (56), Expect = 1e-21 Identities = 82/92 (89%) Strand = Plus / Plus Query: 194 agatttcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaat 253 |||||||||||||||||||||||||| | ||||||||||||||||||||||| || Sbjct: 23757 agatttcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatat 23816 Query: 254 ccggaccatccagtgatgggttgtgaaaacct 285 |||||||||||||| |||||||||||||||| Sbjct: 23817 acggaccatccagtggtgggttgtgaaaacct 23848 Score = 46.1 bits (23), Expect = 0.065 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 62 ttctagttcttttgagctt-ggtgcagttgagcta 95 ||||||||||||||||||| | ||||||||||||| Sbjct: 23524 ttctagttcttttgagcttagttgcagttgagcta 23558 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 attgccatgggttcttcttccgccccgc 166 ||||||||||||||||||| || ||||| Sbjct: 23610 attgccatgggttcttctttcggcccgc 23637
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 1e-21 Identities = 82/92 (89%) Strand = Plus / Plus Query: 194 agatttcaacttcttcaacttgccccnnnttntgttcttttgaggtttcagtttataaat 253 |||||||||||||||||||||||||| | ||||||||||||||||||||||| || Sbjct: 25611388 agatttcaacttcttcaacttgccccgaaccctattcttttgaggtttcagtttatatat 25611447 Query: 254 ccggaccatccagtgatgggttgtgaaaacct 285 |||||||||||||| |||||||||||||||| Sbjct: 25611448 acggaccatccagtggtgggttgtgaaaacct 25611479 Score = 46.1 bits (23), Expect = 0.065 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 62 ttctagttcttttgagctt-ggtgcagttgagcta 95 ||||||||||||||||||| | ||||||||||||| Sbjct: 25611155 ttctagttcttttgagcttagttgcagttgagcta 25611189 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 attgccatgggttcttcttccgccccgc 166 ||||||||||||||||||| || ||||| Sbjct: 25611241 attgccatgggttcttctttcggcccgc 25611268
>gb|AY112495.1| Zea mays CL38436_1 mRNA sequence Length = 888 Score = 105 bits (53), Expect = 8e-20 Identities = 127/153 (83%) Strand = Plus / Plus Query: 153 ttcttccgccccgctgcaagcgtcgaactagttttggcactagatttcaacttcttcaac 212 ||||| ||||| || ||||| || | ||||||||||||||| | ||||||||||||| | Sbjct: 507 ttctttcgccctgccgcaagtgtgggactagttttggcactggccttcaacttcttcagc 566 Query: 213 ttgccccnnnttntgttcttttgaggtttcagtttataaatccggaccatccagtgatgg 272 ||||| | ||||||| || |||||||||||||| || ||||||||||| || ||| Sbjct: 567 ttgcctcgaaccctgttcttctggggtttcagtttatatatgcggaccatccaatggtgg 626 Query: 273 gttgtgaaaacctactcaaaatgtgttagcttg 305 ||||| || |||| ||||||||||||||||||| Sbjct: 627 gttgtaaatacctcctcaaaatgtgttagcttg 659 Score = 46.1 bits (23), Expect = 0.065 Identities = 29/31 (93%) Strand = Plus / Plus Query: 40 tctctaatctagttctgtagtattctagttc 70 ||||||||||||||||||||| |||| |||| Sbjct: 399 tctctaatctagttctgtagttttctggttc 429
>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete sequence Length = 227942 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 98 atatcaagtctctcatgtaaaatg 121 |||||||||||||||||||||||| Sbjct: 191409 atatcaagtctctcatgtaaaatg 191386
>gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromosome unknown, complete sequence Length = 163279 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 98 atatcaagtctctcatgtaaaatg 121 |||||||||||||||||||||||| Sbjct: 152426 atatcaagtctctcatgtaaaatg 152449
>emb|AL158014.20| Human DNA sequence from clone RP11-88I10 on chromosome 10q25.2-26.2 Contains the 5' end of a novel gene, the 5' end of the SAC2 gene for Sac domain-containing inositol phosphatase 2 and three CpG islands, complete sequence Length = 114244 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 tcaagtctctcatgtaaaatgg 122 |||||||||||||||||||||| Sbjct: 96930 tcaagtctctcatgtaaaatgg 96909
>gb|AC005874.3|AC005874 citb_175_g_20, complete sequence Length = 177750 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 tcaagtctctcatgtaaaatgg 122 |||||||||||||||||||||| Sbjct: 168072 tcaagtctctcatgtaaaatgg 168051
>gb|AF134471.2| Homo sapiens chromosome 10 clone citb_175_g_20_Contig902E_1999.01.14, complete sequence Length = 177747 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 tcaagtctctcatgtaaaatgg 122 |||||||||||||||||||||| Sbjct: 168069 tcaagtctctcatgtaaaatgg 168048
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctcatgtaaaatggaacatt 128 |||||||||||||||||||| Sbjct: 560476 ctcatgtaaaatggaacatt 560495
>gb|AC131983.11| Mus musculus chromosome 7, clone RP24-173C11, complete sequence Length = 158500 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ttcttttgaggtttcagttt 247 |||||||||||||||||||| Sbjct: 116724 ttcttttgaggtttcagttt 116705
>emb|AL732507.6| Mouse DNA sequence from clone RP23-67E13 on chromosome 2, complete sequence Length = 197132 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 atggaacattgtttctcttc 138 |||||||||||||||||||| Sbjct: 108273 atggaacattgtttctcttc 108292 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,785,451 Number of Sequences: 3902068 Number of extensions: 2785451 Number of successful extensions: 59187 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59112 Number of HSP's gapped (non-prelim): 75 length of query: 305 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 283 effective length of database: 17,147,199,772 effective search space: 4852657535476 effective search space used: 4852657535476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)