ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37b22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188471.1| Oryza sativa (japonica cultivar-group), predic... 137 5e-29
2dbj|AK100463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 5e-29
3gb|AY112199.1| Zea mays CL62683_1 mRNA sequence 109 1e-20
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
5dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
6dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
7gb|AY335489.1| Brassica rapa subsp. pekinensis ThiJ-like protein... 54 6e-04
8ref|NM_180257.1| Arabidopsis thaliana catalytic AT3G14990 transc... 50 0.009
9ref|NM_112361.3| Arabidopsis thaliana catalytic AT3G14990 transc... 50 0.009
10ref|NM_001035621.1| Arabidopsis thaliana catalytic AT3G14990 tra... 50 0.009
11gb|AF349515.1| Arabidopsis thaliana putative 4-methyl-5(b-hydrox... 50 0.009
12gb|AF326856.1| Arabidopsis thaliana putative 4-methyl-5(b-hydrox... 50 0.009
13gb|AY129490.1| Arabidopsis thaliana AT3g14990/K15M2_13 mRNA, com... 50 0.009
14dbj|AK221026.1| Arabidopsis thaliana mRNA for 4-methyl-5(b-hydro... 50 0.009
15gb|AY039574.1| Arabidopsis thaliana AT3g14990/K15M2_13 mRNA, com... 50 0.009
16ref|NM_104206.2| Arabidopsis thaliana unknown protein AT1G53280 ... 48 0.035
17gb|AY091184.1| Arabidopsis thaliana unknown protein (At1g53280) ... 48 0.035
18gb|AY056268.1| Arabidopsis thaliana unknown protein (At1g53280) ... 48 0.035
19dbj|AK220863.1| Arabidopsis thaliana mRNA for hypothetical prote... 48 0.035
20gb|AY084268.1| Arabidopsis thaliana clone 101735 mRNA, complete ... 48 0.035
21gb|DQ226857.1| Boechera divaricarpa isolate SLW-C-E02 mRNA sequence 46 0.14
22gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 42 2.1
23gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.4
24gb|AY357734.1| Arabidopsis thaliana phosphoribosylanthranilate i... 40 8.4
25gb|AC135860.4| Mus musculus BAC clone RP24-441J10 from chromosom... 40 8.4
26gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome... 40 8.4
27gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, com... 40 8.4
28gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome... 40 8.4
29emb|AL954342.10| Human DNA sequence from clone RP11-343L13 on ch... 40 8.4
30gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Ca... 40 8.4
31dbj|AK092995.1| Homo sapiens cDNA FLJ35676 fis, clone SPLEN2018395 40 8.4
32gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome ... 40 8.4
33gb|AY256857.1| Cloning vector pDXM32 plasmid replication and sta... 40 8.4
34gb|AF336797.2|AF336797 Homo sapiens small-conductance calcium-ac... 40 8.4
35gb|AC007583.2|F24B9 Arabidopsis thaliana chromosome 1 BAC F24B9 ... 40 8.4
36gb|AF130878.1|AF130878 Arabidopsis thaliana phosphoribosylanthra... 40 8.4
37gb|U34757.2|ATU34757 Arabidopsis thaliana phosphoribosylanthrani... 40 8.4
38dbj|AB085948.1| Eleocharis vivipara pep1 mRNA for phosphoenolpyr... 40 8.4
39dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 8.4 
>ref|NM_188471.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score =  137 bits (69), Expect = 5e-29
 Identities = 216/265 (81%)
 Strand = Plus / Minus

                                                                        
Query: 260  tcacataaaaaccaactccttggctatggcgacggctttctccccaccaaatagcttctc 319
            ||||||||||| ||||||||| |||||   ||| |||||||| | |||||| ||||||||
Sbjct: 1554 tcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttctc 1495

                                                                        
Query: 320  ggcgattgccaaggcgaactctgtggcactccctggtgctctgctcgtgataaggttacc 379
              | || || |  ||||||||||| ||    ||||| ||| |||| ||||||||||||||
Sbjct: 1494 aacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttacc 1435

                                                                        
Query: 380  gtcgacgacgaccctgtattcgcacgcgctctggtctgcaagcaggtgtgccatgggtgg 439
             || || || |||||    || || || ||||| || | ||||||||||||||| |||||
Sbjct: 1434 atcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtgg 1375

                                                                        
Query: 440  aaatgatgttgctttcttacccttgagtaaaccgtggggttcgaggacgtaagcagggga 499
            |||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| ||
Sbjct: 1374 aaatgatgttgccttcttccccttcagtaaaccatggggctcgagaacataagcaggaga 1315

                                     
Query: 500  agcgcatattgcaccgtagggttta 524
            ||||||||||||||| || ||||||
Sbjct: 1314 agcgcatattgcaccatatggttta 1290



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 583  gagcaccaggaagaccacccggcatgac 610
            ||||||| || |||||||||||||||||
Sbjct: 1231 gagcacctggcagaccacccggcatgac 1204
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>dbj|AK100463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092A20, full
            insert sequence
          Length = 1723

 Score =  137 bits (69), Expect = 5e-29
 Identities = 216/265 (81%)
 Strand = Plus / Minus

                                                                        
Query: 260  tcacataaaaaccaactccttggctatggcgacggctttctccccaccaaatagcttctc 319
            ||||||||||| ||||||||| |||||   ||| |||||||| | |||||| ||||||||
Sbjct: 1542 tcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttctc 1483

                                                                        
Query: 320  ggcgattgccaaggcgaactctgtggcactccctggtgctctgctcgtgataaggttacc 379
              | || || |  ||||||||||| ||    ||||| ||| |||| ||||||||||||||
Sbjct: 1482 aacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttacc 1423

                                                                        
Query: 380  gtcgacgacgaccctgtattcgcacgcgctctggtctgcaagcaggtgtgccatgggtgg 439
             || || || |||||    || || || ||||| || | ||||||||||||||| |||||
Sbjct: 1422 atcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtgg 1363

                                                                        
Query: 440  aaatgatgttgctttcttacccttgagtaaaccgtggggttcgaggacgtaagcagggga 499
            |||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| ||
Sbjct: 1362 aaatgatgttgccttcttccccttcagtaaaccatggggctcgagaacataagcaggaga 1303

                                     
Query: 500  agcgcatattgcaccgtagggttta 524
            ||||||||||||||| || ||||||
Sbjct: 1302 agcgcatattgcaccatatggttta 1278



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 583  gagcaccaggaagaccacccggcatgac 610
            ||||||| || |||||||||||||||||
Sbjct: 1219 gagcacctggcagaccacccggcatgac 1192
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>gb|AY112199.1| Zea mays CL62683_1 mRNA sequence
          Length = 473

 Score =  109 bits (55), Expect = 1e-20
 Identities = 172/211 (81%)
 Strand = Plus / Minus

                                                                       
Query: 334 cgaactctgtggcactccctggtgctctgctcgtgataaggttaccgtcgacgacgaccc 393
           |||||||||| ||| | ||||| ||||| || |||||||||||||| || || || ||||
Sbjct: 372 cgaactctgtcgcagtgcctggggctctactggtgataaggttaccatctacaacaaccc 313

                                                                       
Query: 394 tgtattcgcacgcgctctggtctgcaagcaggtgtgccatgggtggaaatgatgttgctt 453
           | |  || || |||||||||||||  |||||||||| ||| |||||||||| |||||| |
Sbjct: 312 tatgctcacatgcgctctggtctgtgagcaggtgtgacataggtggaaatgctgttgcct 253

                                                                       
Query: 454 tcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgcatattgcac 513
           |||| ||||| ||||||||||| || || || || | ||| || || || ||||||||||
Sbjct: 252 tcttgcccttcagtaaaccgtgcggctcaagcacatgagctggagaggcacatattgcac 193

                                          
Query: 514 cgtagggtttaccggattccgcttgcttctt 544
           | || ||||||  |||||| ||||| |||||
Sbjct: 192 cataaggtttattggattctgcttgtttctt 162
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 162/203 (79%)
 Strand = Plus / Minus

                                                                           
Query: 260     tcacataaaaaccaactccttggctatggcgacggctttctccccaccaaatagcttctc 319
               ||||||||||| ||||||||| |||||   ||| |||||||| | |||||| ||||||||
Sbjct: 6434470 tcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttctc 6434411

                                                                           
Query: 320     ggcgattgccaaggcgaactctgtggcactccctggtgctctgctcgtgataaggttacc 379
                 | || || |  ||||||||||| ||    ||||| ||| |||| ||||||||||||||
Sbjct: 6434410 aacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttacc 6434351

                                                                           
Query: 380     gtcgacgacgaccctgtattcgcacgcgctctggtctgcaagcaggtgtgccatgggtgg 439
                || || || |||||    || || || ||||| || | ||||||||||||||| |||||
Sbjct: 6434350 atcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtgg 6434291

                                      
Query: 440     aaatgatgttgctttcttaccct 462
               |||||||||||| ||||| ||||
Sbjct: 6434290 aaatgatgttgccttcttcccct 6434268



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                           
Query: 460     ccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgcatattgcaccgtagg 519
               |||| |||||||| ||||| ||||| || |||||||| ||||||||||||||||| || |
Sbjct: 6434074 ccttcagtaaaccatggggctcgagaacataagcaggagaagcgcatattgcaccatatg 6434015

                    
Query: 520     gttta 524
               |||||
Sbjct: 6434014 gttta 6434010
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>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0489G09
          Length = 148707

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 162/203 (79%)
 Strand = Plus / Minus

                                                                        
Query: 260  tcacataaaaaccaactccttggctatggcgacggctttctccccaccaaatagcttctc 319
            ||||||||||| ||||||||| |||||   ||| |||||||| | |||||| ||||||||
Sbjct: 1950 tcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttctc 1891

                                                                        
Query: 320  ggcgattgccaaggcgaactctgtggcactccctggtgctctgctcgtgataaggttacc 379
              | || || |  ||||||||||| ||    ||||| ||| |||| ||||||||||||||
Sbjct: 1890 aacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttacc 1831

                                                                        
Query: 380  gtcgacgacgaccctgtattcgcacgcgctctggtctgcaagcaggtgtgccatgggtgg 439
             || || || |||||    || || || ||||| || | ||||||||||||||| |||||
Sbjct: 1830 atcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtgg 1771

                                   
Query: 440  aaatgatgttgctttcttaccct 462
            |||||||||||| ||||| ||||
Sbjct: 1770 aaatgatgttgccttcttcccct 1748



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                        
Query: 460  ccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgcatattgcaccgtagg 519
            |||| |||||||| ||||| ||||| || |||||||| ||||||||||||||||| || |
Sbjct: 1554 ccttcagtaaaccatggggctcgagaacataagcaggagaagcgcatattgcaccatatg 1495

                 
Query: 520  gttta 524
            |||||
Sbjct: 1494 gttta 1490
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 162/203 (79%)
 Strand = Plus / Minus

                                                                         
Query: 260   tcacataaaaaccaactccttggctatggcgacggctttctccccaccaaatagcttctc 319
             ||||||||||| ||||||||| |||||   ||| |||||||| | |||||| ||||||||
Sbjct: 56865 tcacataaaaatcaactccttcgctatactgaccgctttctctcgaccaaacagcttctc 56806

                                                                         
Query: 320   ggcgattgccaaggcgaactctgtggcactccctggtgctctgctcgtgataaggttacc 379
               | || || |  ||||||||||| ||    ||||| ||| |||| ||||||||||||||
Sbjct: 56805 aacaatggctagcgcgaactctgtcgcggagcctggggctttgctagtgataaggttacc 56746

                                                                         
Query: 380   gtcgacgacgaccctgtattcgcacgcgctctggtctgcaagcaggtgtgccatgggtgg 439
              || || || |||||    || || || ||||| || | ||||||||||||||| |||||
Sbjct: 56745 atcaacaaccaccctactgtcacatgcactctgatcagtaagcaggtgtgccattggtgg 56686

                                    
Query: 440   aaatgatgttgctttcttaccct 462
             |||||||||||| ||||| ||||
Sbjct: 56685 aaatgatgttgccttcttcccct 56663



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 460   ccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgcatattgcaccgtagg 519
             |||| |||||||| ||||| ||||| || |||||||| ||||||||||||||||| || |
Sbjct: 56469 ccttcagtaaaccatggggctcgagaacataagcaggagaagcgcatattgcaccatatg 56410

                  
Query: 520   gttta 524
             |||||
Sbjct: 56409 gttta 56405
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>gb|AY335489.1| Brassica rapa subsp. pekinensis ThiJ-like protein (TJLP1) mRNA,
           complete cds
          Length = 1361

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 447 gttgctttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgcat 506
           ||||| |||||||||||||||||||| || || || | ||||||| |||| || ||||||
Sbjct: 997 gttgccttcttacccttgagtaaaccatgaggctcaaagacgtaaacaggcgatgcgcat 938

              
Query: 507 att 509
           |||
Sbjct: 937 att 935
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>ref|NM_180257.1| Arabidopsis thaliana catalytic AT3G14990 transcript variant
            AT3G14990.2 mRNA, complete cds
          Length = 1460

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 453  ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
            |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 1014 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 962
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>ref|NM_112361.3| Arabidopsis thaliana catalytic AT3G14990 transcript variant
            AT3G14990.1 mRNA, complete cds
          Length = 1531

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 453  ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
            |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 1085 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 1033
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>ref|NM_001035621.1| Arabidopsis thaliana catalytic AT3G14990 transcript variant
            AT3G14990.3 mRNA, complete cds
          Length = 1547

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 453  ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
            |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 1101 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 1049
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>gb|AF349515.1| Arabidopsis thaliana putative 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein (At3g14990) mRNA,
           complete cds
          Length = 1229

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 453 ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
           |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 989 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 937
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>gb|AF326856.1| Arabidopsis thaliana putative 4-methyl-5(b-hydroxyethyl)-thiazole
            monophosphate biosynthesis protein (At3g14990) mRNA,
            complete cds
          Length = 1422

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 453  ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
            |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 1048 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 996
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>gb|AY129490.1| Arabidopsis thaliana AT3g14990/K15M2_13 mRNA, complete cds
          Length = 1179

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 453 ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
           |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 989 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 937
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>dbj|AK221026.1| Arabidopsis thaliana mRNA for 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, partial cds, clone:
           RAFL22-70-N13
          Length = 585

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 453 ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
           |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 217 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 165
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>gb|AY039574.1| Arabidopsis thaliana AT3g14990/K15M2_13 mRNA, complete cds
          Length = 1406

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 453  ttcttacccttgagtaaaccgtggggttcgaggacgtaagcaggggaagcgca 505
            |||||||||||||||||||| |  || |||| |||||||||||| || |||||
Sbjct: 1048 ttcttacccttgagtaaaccattaggctcgaagacgtaagcaggcgatgcgca 996
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>ref|NM_104206.2| Arabidopsis thaliana unknown protein AT1G53280 mRNA, complete cds
          Length = 2007

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 437  tggaaatgatgttgctttcttacccttgagtaaacc 472
            |||||| | |||||| ||||||||||||||||||||
Sbjct: 1191 tggaaacgctgttgccttcttacccttgagtaaacc 1156
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>gb|AY091184.1| Arabidopsis thaliana unknown protein (At1g53280) mRNA, complete cds
          Length = 1348

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 437  tggaaatgatgttgctttcttacccttgagtaaacc 472
            |||||| | |||||| ||||||||||||||||||||
Sbjct: 1143 tggaaacgctgttgccttcttacccttgagtaaacc 1108
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>gb|AY056268.1| Arabidopsis thaliana unknown protein (At1g53280) mRNA, complete cds
          Length = 1555

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 437  tggaaatgatgttgctttcttacccttgagtaaacc 472
            |||||| | |||||| ||||||||||||||||||||
Sbjct: 1191 tggaaacgctgttgccttcttacccttgagtaaacc 1156
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>dbj|AK220863.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-41-G20
          Length = 607

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 437 tggaaatgatgttgctttcttacccttgagtaaacc 472
           |||||| | |||||| ||||||||||||||||||||
Sbjct: 272 tggaaacgctgttgccttcttacccttgagtaaacc 237
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>gb|AY084268.1| Arabidopsis thaliana clone 101735 mRNA, complete sequence
          Length = 1518

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 437  tggaaatgatgttgctttcttacccttgagtaaacc 472
            |||||| | |||||| ||||||||||||||||||||
Sbjct: 1177 tggaaacgctgttgccttcttacccttgagtaaacc 1142
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>gb|DQ226857.1| Boechera divaricarpa isolate SLW-C-E02 mRNA sequence
          Length = 617

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 446 tgttgctttcttacccttgagtaaacc 472
           |||||| ||||||||||||||||||||
Sbjct: 349 tgttgccttcttacccttgagtaaacc 323
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 303     ccaccaaatagcttctcggcg 323
               |||||||||||||||||||||
Sbjct: 1944223 ccaccaaatagcttctcggcg 1944203
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 592     gaagaccacccggcatgacgatga 615
               |||||||||||||| |||||||||
Sbjct: 4841093 gaagaccacccggcctgacgatga 4841116
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>gb|AY357734.1| Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1)
            gene, PAI1-invpai1 allele, complete cds
          Length = 6309

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  aatgatgttgctttcttacc 460
            ||||||||||||||||||||
Sbjct: 5975 aatgatgttgctttcttacc 5956
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>gb|AC135860.4| Mus musculus BAC clone RP24-441J10 from chromosome 7, complete sequence
          Length = 196609

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     cacaccctcgacaaatatgt 48
              ||||||||||||||||||||
Sbjct: 155205 cacaccctcgacaaatatgt 155186
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>gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome 9, complete sequence
          Length = 184917

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    ttctcagtgcttgtgaactt 580
              ||||||||||||||||||||
Sbjct: 122608 ttctcagtgcttgtgaactt 122627
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>gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, complete sequence
          Length = 242288

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    ttctcagtgcttgtgaactt 580
              ||||||||||||||||||||
Sbjct: 158891 ttctcagtgcttgtgaactt 158910
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>gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome 7, complete
            sequence
          Length = 185494

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   cacaccctcgacaaatatgt 48
            ||||||||||||||||||||
Sbjct: 7625 cacaccctcgacaaatatgt 7606
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>emb|AL954342.10| Human DNA sequence from clone RP11-343L13 on chromosome 1 Contains part
             of the KCNN3 gene for potassium intermediate/small
             conductance calcium-activated channel, subfamily N, member
             3, complete sequence
          Length = 28342

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   gttgtcacataaaaaccaac 275
             ||||||||||||||||||||
Sbjct: 10246 gttgtcacataaaaaccaac 10265
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>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192046

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    gagcctagatggagccccat 238
              ||||||||||||||||||||
Sbjct: 167147 gagcctagatggagccccat 167128
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>dbj|AK092995.1| Homo sapiens cDNA FLJ35676 fis, clone SPLEN2018395
          Length = 2073

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gagcctagatggagccccat 238
           ||||||||||||||||||||
Sbjct: 825 gagcctagatggagccccat 806
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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   ctctgtggcactccctggtgctct 361
             |||||| |||||||||||||||||
Sbjct: 89019 ctctgttgcactccctggtgctct 89042
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>gb|AY256857.1| Cloning vector pDXM32 plasmid replication and stability functions
            region, partial sequence
          Length = 5443

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 601  ccggcatgacgatgaggtcg 620
            ||||||||||||||||||||
Sbjct: 982  ccggcatgacgatgaggtcg 1001
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>gb|AF336797.2|AF336797 Homo sapiens small-conductance calcium-activated potassium channel
              (KCNN3) gene, complete cds
          Length = 163217

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    gttgtcacataaaaaccaac 275
              ||||||||||||||||||||
Sbjct: 102853 gttgtcacataaaaaccaac 102834
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>gb|AC007583.2|F24B9 Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, complete sequence
          Length = 107234

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   aatgatgttgctttcttacc 460
             ||||||||||||||||||||
Sbjct: 31438 aatgatgttgctttcttacc 31419
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>gb|AF130878.1|AF130878 Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1)
            gene, complete cds
          Length = 7484

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  aatgatgttgctttcttacc 460
            ||||||||||||||||||||
Sbjct: 2563 aatgatgttgctttcttacc 2544
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>gb|U34757.2|ATU34757 Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1) and
            (PAI4) genes, complete cds
          Length = 10784

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  aatgatgttgctttcttacc 460
            ||||||||||||||||||||
Sbjct: 8924 aatgatgttgctttcttacc 8905



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  aatgatgttgctttcttacc 460
            ||||||||||||||||||||
Sbjct: 2102 aatgatgttgctttcttacc 2083
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>dbj|AB085948.1| Eleocharis vivipara pep1 mRNA for phosphoenolpyruvate carboxylase,
            complete cds
          Length = 3303

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    atatatatggaaggttacacaaca 24
            |||||||| |||||||||||||||
Sbjct: 3247 atatatatagaaggttacacaaca 3224
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>dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-567F3, complete
            sequences
          Length = 157385

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 577  acttgagagcaccaggaaga 596
            ||||||||||||||||||||
Sbjct: 3727 acttgagagcaccaggaaga 3708


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,967,648
Number of Sequences: 3902068
Number of extensions: 3967648
Number of successful extensions: 68692
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68559
Number of HSP's gapped (non-prelim): 132
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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