ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37b20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK060594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
2ref|NM_193202.1| Oryza sativa (japonica cultivar-group), predic... 159 1e-35
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
5gb|AC159130.5| Mus musculus BAC clone RP23-401J13 from chromosom... 42 1.8
6ref|XM_390454.1| Gibberella zeae PH-1 chromosome 1 predicted pro... 42 1.8
7emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chr... 42 1.8
8gb|AC131708.3| Mus musculus BAC clone RP24-127P5 from chromosome... 42 1.8
9gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer... 40 7.0
10ref|XM_451028.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A00682g ... 40 7.0
11gb|AC161603.4| Mus musculus BAC clone RP23-304M9 from chromosome... 40 7.0
12gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CI... 40 7.0
13emb|Z81095.1|CEF59F4 Caenorhabditis elegans Cosmid F59F4, comple... 40 7.0
14ref|XM_758356.1| Theileria parva strain Muguga chromosome 3 40S ... 40 7.0
15gb|AC141322.24| Medicago truncatula clone mth2-8e1, complete seq... 40 7.0
16emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 7.0
17gb|AC161451.4| Mus musculus BAC clone RP23-405D12 from chromosom... 40 7.0
18emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on ch... 40 7.0
19gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 40 7.0
20gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, co... 40 7.0
21gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 7.0
22gb|BC102316.1| Bos taurus cDNA clone MGC:127580 IMAGE:7949886, c... 40 7.0
23gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete... 40 7.0
24gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380... 40 7.0
25gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, comp... 40 7.0
26gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 40 7.0
27gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, co... 40 7.0
28emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chro... 40 7.0
29gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosom... 40 7.0 
>dbj|AK060594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F04, full
           insert sequence
          Length = 1112

 Score =  170 bits (86), Expect = 3e-39
 Identities = 131/146 (89%)
 Strand = Plus / Minus

                                                                       
Query: 372 ttcctgcagatcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaa 431
           ||||||||| |||||||| | |||||||||||  |||||||||||||||||||| || ||
Sbjct: 755 ttcctgcaggtcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaa 696

                                                                       
Query: 432 ggcatgaacatccacttgcttcgatactttgtcatattgtacatcaatcttattgacctg 491
           |||||||||||| ||||| || ||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 695 ggcatgaacatcgacttgttttgataccttgtcatattgtatatcaatcttgttgacctg 636

                                     
Query: 492 tcttggtttggcaataagatttactg 517
           ||||||||||| |||||||| |||||
Sbjct: 635 tcttggtttggtaataagatctactg 610



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                       
Query: 160 gattacttcacaagcggtgaagtcagaatgtatatgtcgatctcatccaacgtcgggcgg 219
           ||||||||||| || | |||||   ||||||||||||| || |||||||| || || || 
Sbjct: 967 gattacttcacgagagatgaagcaggaatgtatatgtcaatttcatccaatgttggacga 908

                                                                      
Query: 220 tcgcgtagcgtcaagctgtgttcatttgccagatgcaagagacaaatgaaatagaggtg 278
           || ||||  ||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 907 tcacgtaaggtcaagctgtgctcatttgccaaatgcaagaggcaaatgaaatataggtg 849
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>ref|NM_193202.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2055

 Score =  159 bits (80), Expect = 1e-35
 Identities = 122/136 (89%)
 Strand = Plus / Minus

                                                                        
Query: 382  tcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaaggcatgaaca 441
            |||||||| | |||||||||||  |||||||||||||||||||| || ||||||||||||
Sbjct: 1838 tcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaaggcatgaaca 1779

                                                                        
Query: 442  tccacttgcttcgatactttgtcatattgtacatcaatcttattgacctgtcttggtttg 501
            || ||||| || ||||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1778 tcgacttgttttgataccttgtcatattgtatatcaatcttgttgacctgtcttggtttg 1719

                            
Query: 502  gcaataagatttactg 517
            | |||||||| |||||
Sbjct: 1718 gtaataagatctactg 1703



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                        
Query: 185  gaatgtatatgtcgatctcatccaacgtcgggcggtcgcgtagcgtcaagctgtgttcat 244
            ||||||||||||| || |||||||| || || || || ||||  ||||||||||| ||||
Sbjct: 2032 gaatgtatatgtcaatttcatccaatgttggacgatcacgtaaggtcaagctgtgctcat 1973

                                              
Query: 245  ttgccagatgcaagagacaaatgaaatagaggtg 278
            |||||| ||||||||| ||||||||||| |||||
Sbjct: 1972 ttgccaaatgcaagaggcaaatgaaatataggtg 1939
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 382      tcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaaggcatgaaca 441
                |||||||| | |||||||||||  |||||||||||||||||||| || ||||||||||||
Sbjct: 19252173 tcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaaggcatgaaca 19252114

                                                                 
Query: 442      tccacttgcttcgatactttgtcatattgtacatcaatcttattgacct 490
                || ||||| || ||||| ||||||||||||| ||||||||| |||||||
Sbjct: 19252113 tcgacttgttttgataccttgtcatattgtatatcaatcttgttgacct 19252065



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                            
Query: 160      gattacttcacaagcggtgaagtcagaatgtatatgtcgatctcatccaacgtcgggcgg 219
                ||||||||||| || | |||||   ||||||||||||| || |||||||| || || || 
Sbjct: 19253285 gattacttcacgagagatgaagcaggaatgtatatgtcaatttcatccaatgttggacga 19253226

                                                                           
Query: 220      tcgcgtagcgtcaagctgtgttcatttgccagatgcaagagacaaatgaaatagaggtg 278
                || ||||  ||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 19253225 tcacgtaaggtcaagctgtgctcatttgccaaatgcaagaggcaaatgaaatataggtg 19253167



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 487      acctgtcttggtttggcaataagatttactg 517
                |||||||||||||||| |||||||| |||||
Sbjct: 19251168 acctgtcttggtttggtaataagatctactg 19251138
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>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1619_F12
          Length = 133028

 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                         
Query: 382   tcatcagtcttagcagatgtatgaatgtgattccagagcacttcctttaaggcatgaaca 441
             |||||||| | |||||||||||  |||||||||||||||||||| || ||||||||||||
Sbjct: 71794 tcatcagtgtcagcagatgtattgatgtgattccagagcacttctttcaaggcatgaaca 71735

                                                              
Query: 442   tccacttgcttcgatactttgtcatattgtacatcaatcttattgacct 490
             || ||||| || ||||| ||||||||||||| ||||||||| |||||||
Sbjct: 71734 tcgacttgttttgataccttgtcatattgtatatcaatcttgttgacct 71686



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                         
Query: 160   gattacttcacaagcggtgaagtcagaatgtatatgtcgatctcatccaacgtcgggcgg 219
             ||||||||||| || | |||||   ||||||||||||| || |||||||| || || || 
Sbjct: 72906 gattacttcacgagagatgaagcaggaatgtatatgtcaatttcatccaatgttggacga 72847

                                                                        
Query: 220   tcgcgtagcgtcaagctgtgttcatttgccagatgcaagagacaaatgaaatagaggtg 278
             || ||||  ||||||||||| |||||||||| ||||||||| ||||||||||| |||||
Sbjct: 72846 tcacgtaaggtcaagctgtgctcatttgccaaatgcaagaggcaaatgaaatataggtg 72788



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 487   acctgtcttggtttggcaataagatttactg 517
             |||||||||||||||| |||||||| |||||
Sbjct: 70789 acctgtcttggtttggtaataagatctactg 70759
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>gb|AC159130.5| Mus musculus BAC clone RP23-401J13 from chromosome 6, complete sequence
          Length = 201901

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     ataaatacatgatacaaaatg 103
              |||||||||||||||||||||
Sbjct: 172217 ataaatacatgatacaaaatg 172197
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>ref|XM_390454.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG10278.1)
            partial mRNA
          Length = 1293

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 261  acaaatgaaatagaggtgtgg 281
            |||||||||||||||||||||
Sbjct: 1169 acaaatgaaatagaggtgtgg 1149
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>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
              ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene for
              transcription factor AP-2 alpha (activating
              enhancer-binding protein 2 alpha), four novel genes, a
              mitochondrial ribosomal protein L47 (MRPL47) pseudogene and
              11 CpG islands, complete sequence
          Length = 180133

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 395    cagatgtatgaatgtgattccagag 419
              ||||||||||||| |||||||||||
Sbjct: 122707 cagatgtatgaatctgattccagag 122683
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>gb|AC131708.3| Mus musculus BAC clone RP24-127P5 from chromosome 6, complete sequence
          Length = 185214

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     ataaatacatgatacaaaatg 103
              |||||||||||||||||||||
Sbjct: 112100 ataaatacatgatacaaaatg 112080
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>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aaatacatgatacaaaatgt 104
             ||||||||||||||||||||
Sbjct: 70122 aaatacatgatacaaaatgt 70141
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>ref|XM_451028.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A00682g predicted mRNA
          Length = 2127

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  ctggtactgcatggaagatc 326
            ||||||||||||||||||||
Sbjct: 1115 ctggtactgcatggaagatc 1134
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>gb|AC161603.4| Mus musculus BAC clone RP23-304M9 from chromosome 15, complete sequence
          Length = 199419

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ttgccagatgcaagagacaa 264
              ||||||||||||||||||||
Sbjct: 186176 ttgccagatgcaagagacaa 186195
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>gb|AC004131.1|HUAC004131 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-69G12, complete
             sequence
          Length = 77713

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    caaataaatacatgatacaa 99
             ||||||||||||||||||||
Sbjct: 24705 caaataaatacatgatacaa 24724
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>emb|Z81095.1|CEF59F4 Caenorhabditis elegans Cosmid F59F4, complete sequence
          Length = 20712

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 81   aaataaatacatgatacaaaatgt 104
            ||||||| ||||||||||||||||
Sbjct: 9371 aaataaaaacatgatacaaaatgt 9394
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>ref|XM_758356.1| Theileria parva strain Muguga chromosome 3 40S ribosomal protein S4
           (TP03_0429) partial mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  aataaatacatgatacaaaa 101
           ||||||||||||||||||||
Sbjct: 97  aataaatacatgatacaaaa 116
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>gb|AC141322.24| Medicago truncatula clone mth2-8e1, complete sequence
          Length = 87559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 461   tgtcatattgtacatcaatcttat 484
             ||||||||| ||||||||||||||
Sbjct: 47651 tgtcatattttacatcaatcttat 47628
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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ctggtactgcatggaagatc 326
             ||||||||||||||||||||
Sbjct: 68799 ctggtactgcatggaagatc 68818
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>gb|AC161451.4| Mus musculus BAC clone RP23-405D12 from chromosome 15, complete
             sequence
          Length = 190621

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ttgccagatgcaagagacaa 264
             ||||||||||||||||||||
Sbjct: 30360 ttgccagatgcaagagacaa 30379
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>emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on chromosome 11 Contains
             part of a novel gene and a CpG island, complete sequence
          Length = 218414

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   tgcatggaagatcatgcagt 333
             ||||||||||||||||||||
Sbjct: 53837 tgcatggaagatcatgcagt 53818
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ttacttcacaagcggtgaag 181
              ||||||||||||||||||||
Sbjct: 510579 ttacttcacaagcggtgaag 510598
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>gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, complete sequence
          Length = 171191

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    cagatcatcagtcttagcag 397
              ||||||||||||||||||||
Sbjct: 118418 cagatcatcagtcttagcag 118437
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 472     acatcaatcttattgacctg 491
               ||||||||||||||||||||
Sbjct: 5435073 acatcaatcttattgacctg 5435054
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>gb|BC102316.1| Bos taurus cDNA clone MGC:127580 IMAGE:7949886, complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 378  cagatcatcagtcttagcagatgt 401
            ||||||||||||||| ||||||||
Sbjct: 1464 cagatcatcagtctttgcagatgt 1487
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>gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete sequence
          Length = 136159

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     aataaatacatgatacaaaa 101
              ||||||||||||||||||||
Sbjct: 125046 aataaatacatgatacaaaa 125065
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>gb|AC027130.5|AC027130 Homo sapiens chromosome 16 clone CTD-2380F24, complete sequence
          Length = 134640

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     caaataaatacatgatacaa 99
              ||||||||||||||||||||
Sbjct: 112990 caaataaatacatgatacaa 113009
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>gb|AC134300.3| Homo sapiens chromosome 16 clone CTC-496I23, complete sequence
          Length = 171048

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    caaataaatacatgatacaa 99
             ||||||||||||||||||||
Sbjct: 88601 caaataaatacatgatacaa 88582
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>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   cagatcatcagtcttagcag 397
             ||||||||||||||||||||
Sbjct: 12918 cagatcatcagtcttagcag 12937
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>gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, complete sequence
          Length = 181434

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   cagatcatcagtcttagcag 397
             ||||||||||||||||||||
Sbjct: 22455 cagatcatcagtcttagcag 22436
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>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete
             sequence
          Length = 226251

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tgaagtcagaatgtatatgt 196
             ||||||||||||||||||||
Sbjct: 69043 tgaagtcagaatgtatatgt 69024
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>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 358   tctatgccatctctttcctgcaga 381
             |||||||||||||||| |||||||
Sbjct: 45365 tctatgccatctcttttctgcaga 45342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,325,616
Number of Sequences: 3902068
Number of extensions: 4325616
Number of successful extensions: 75483
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75396
Number of HSP's gapped (non-prelim): 87
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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