ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1p02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRK31_ARATH (Q93WT0) Probable WRKY transcription factor 31 (WRKY... 41 0.002
2WRK47_ARATH (Q9ZSI7) Probable WRKY transcription factor 47 (WRKY... 37 0.043
3WRKY6_ARATH (Q9C519) WRKY transcription factor 6 (WRKY DNA-bindi... 36 0.056
4WRK42_ARATH (Q9XEC3) Probable WRKY transcription factor 42 (WRKY... 36 0.056
5WRK40_ARATH (Q9SAH7) Probable WRKY transcription factor 40 (WRKY... 32 1.1
6WRK61_ARATH (Q8VWV6) Probable WRKY transcription factor 61 (WRKY... 30 3.1
7EXOW_RHIME (P33702) Succinoglycan biosynthesis protein exoW (EC ... 29 9.0

>WRK31_ARATH (Q93WT0) Probable WRKY transcription factor 31 (WRKY DNA-binding|
           protein 31)
          Length = 538

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -3

Query: 488 PRQPMGLPG--QLSDSVSXXXXAITADPNFTVALAAAISSIMAG 363
           P QP+ +     +++SVS    AI +DPNF  ALAAAI+SIM G
Sbjct: 473 PAQPLQIAATSSVAESVSAASAAIASDPNFAAALAAAITSIMNG 516



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>WRK47_ARATH (Q9ZSI7) Probable WRKY transcription factor 47 (WRKY DNA-binding|
           protein 47)
          Length = 489

 Score = 36.6 bits (83), Expect = 0.043
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -3

Query: 479 PMGLPGQLSDSVSXXXXAITADPNFTVALAAAISSIMAG 363
           P   P ++ DSV      I  DPNFT ALAAAIS+I+ G
Sbjct: 413 PQAPPREMVDSVRAA---IAMDPNFTAALAAAISNIIGG 448



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>WRKY6_ARATH (Q9C519) WRKY transcription factor 6 (WRKY DNA-binding protein 6)|
           (AtWRKY6)
          Length = 553

 Score = 36.2 bits (82), Expect = 0.056
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -3

Query: 455 SDSVSXXXXAITADPNFTVALAAAISSIMAG 363
           S +V+    A+TADPNFT ALAA ISS++ G
Sbjct: 510 SHAVADTITALTADPNFTAALAAVISSMING 540



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>WRK42_ARATH (Q9XEC3) Probable WRKY transcription factor 42 (WRKY DNA-binding|
           protein 42)
          Length = 528

 Score = 36.2 bits (82), Expect = 0.056
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = -3

Query: 488 PRQPMGLPGQLSDSVSXXXXAITADPNFTVALAAAISSIMAGQH 357
           P QP+       +SVS    AI ++PNF  ALAAAI+SI+ G +
Sbjct: 468 PSQPLNA----GESVSAATAAIASNPNFAAALAAAITSIINGSN 507



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>WRK40_ARATH (Q9SAH7) Probable WRKY transcription factor 40 (WRKY DNA-binding|
           protein 40)
          Length = 302

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 518 DSVDAGQFAQPRQPMGLPGQLSDSVSXXXXAITADPNFTVALAAAISSIMAGQH 357
           D +++ +   P   +  P      V     ++T DPNFT ALAAA++  +  Q+
Sbjct: 245 DMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQN 298



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>WRK61_ARATH (Q8VWV6) Probable WRKY transcription factor 61 (WRKY DNA-binding|
           protein 61)
          Length = 480

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 425 ITADPNFTVALAAAISSIMAG 363
           IT DP+F  ALA A+SSIM G
Sbjct: 443 ITTDPSFQSALATALSSIMGG 463



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>EXOW_RHIME (P33702) Succinoglycan biosynthesis protein exoW (EC 2.-.-.-)|
          Length = 319

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -1

Query: 190 WMVFHSSLVRIS---FSRSLFGLDTKHDIRSLLFFCDFAAAKKKVVL 59
           W   H S + I    F +  F    K     +LFFCD   A K+VVL
Sbjct: 166 WSFLHMSCMVIGRKLFEKVRFEATLKLAAEDVLFFCDCVLASKRVVL 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,878,358
Number of Sequences: 219361
Number of extensions: 896400
Number of successful extensions: 2368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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