ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37b13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 94 4e-19
2CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 86 7e-17
3CALX_PEA (O82709) Calnexin homolog precursor 85 2e-16
4CALX_HELTU (Q39994) Calnexin homolog precursor 79 8e-15
5CALX1_ARATH (P29402) Calnexin homolog 1 precursor 75 2e-13
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 1.9
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 3.3
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.3

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 45/78 (57%), Positives = 55/78 (70%)
 Frame = -1

Query: 617 KQKXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISIL 438
           K K        S+ +S FQKK+F +LYKIADIPFL  +K KI DLIEK EKQPN+TI IL
Sbjct: 420 KLKAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGIL 479

Query: 437 ASVAVILVTVLFRTIFGG 384
            +V V+ V++ FR IFGG
Sbjct: 480 VAVVVVFVSIFFRLIFGG 497



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 41/99 (41%), Positives = 59/99 (59%)
 Frame = -1

Query: 617 KQKXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISIL 438
           KQK       E++ L  +QKK+F +LYK+ADI FL  YK KI++LIEK E QPN+TI +L
Sbjct: 413 KQKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVL 472

Query: 437 ASVAVILVTVLFRTIFGGXXXXXXXXXXXXXXXPSATEA 321
            S+ ++ +++ F+ IFGG                S +EA
Sbjct: 473 ISIVIVFLSLFFKLIFGGAKAKVEKKKPETAAETSTSEA 511



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>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 40/67 (59%), Positives = 51/67 (76%)
 Frame = -1

Query: 584 SEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVL 405
           SE ++  QKK F +LYKIADI FL   K KII++IEKGEKQPN+TI I+ SV ++ V++ 
Sbjct: 436 SEGIAGIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIF 495

Query: 404 FRTIFGG 384
           FR IFGG
Sbjct: 496 FRLIFGG 502



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 33/66 (50%), Positives = 50/66 (75%)
 Frame = -1

Query: 581 EDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLF 402
           + L   QK +F VLYKIAD+PFL  +K+K+++LIEK E QPNITI ++ S+ V++ ++L 
Sbjct: 426 DGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILL 485

Query: 401 RTIFGG 384
           + +FGG
Sbjct: 486 KLLFGG 491



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 33/78 (42%), Positives = 50/78 (64%)
 Frame = -1

Query: 617 KQKXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISIL 438
           KQK        ++ L  +QK +F +L K+AD+ FL  YK KI +LIEK E+QPN+TI +L
Sbjct: 411 KQKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVL 470

Query: 437 ASVAVILVTVLFRTIFGG 384
            ++ V+  ++  + IFGG
Sbjct: 471 VAIVVVFFSLFLKLIFGG 488



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -3

Query: 441 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 316
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 432 SCCHPCYCALQNHFRWQEGSGTCEARCC 349
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 417 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 322
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,235,686
Number of Sequences: 219361
Number of extensions: 1111572
Number of successful extensions: 3415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3410
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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