ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36m11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
13MG2_ECOLI (P04395) DNA-3-methyladenine glycosylase 2 (EC 3.2.2.... 29 3.0
2SWC5_USTMA (Q4P6D5) SWR1-complex protein 5 28 8.7

>3MG2_ECOLI (P04395) DNA-3-methyladenine glycosylase 2 (EC 3.2.2.21)|
           (DNA-3-methyladenine glycosylase II)
           (3-methyladenine-DNA glycosylase II, inducible) (TAG II)
           (DNA-3-methyladenine glycosidase II)
          Length = 282

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   LLTAIGRIARNRXHINLGKDLQAADAEC 85
           ++TAI  IAR+  HINL   L+   AEC
Sbjct: 47  VVTAIPDIARHTLHINLSAGLEPVAAEC 74



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>SWC5_USTMA (Q4P6D5) SWR1-complex protein 5|
          Length = 376

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 16  RADREEQVSHKPGKRSAGSRRRMLYXKSHGSD 111
           R +REE V+   G++  G RRR+ +    G+D
Sbjct: 123 RKEREELVAAAGGEQRLGKRRRLAHVSESGAD 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,317,081
Number of Sequences: 219361
Number of extensions: 410534
Number of successful extensions: 834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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