ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37b04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 1229 bits (620), Expect = 0.0 Identities = 634/636 (99%), Gaps = 2/636 (0%) Strand = Plus / Minus Query: 1 atatattagaaaatacaaattggtatgtgtcaaggaaagacacttatttttcaactcgta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 atatattagaaaatacaaattggtatgtgtcaaggaaagacacttatttttcaactcgta 1791 Query: 61 ctgagttccatatagtatttgtagttgatagtagtccgctcgctcacatgggtgtctacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1790 ctgagttccatatagtatttgtagttgatagtagtccgctcgctcacatgggtgtctacc 1731 Query: 121 aagggtactccgaccataagattgtcacctcgaattcagcatcattgacaccaacaagac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1730 aagggtactccgaccataagattgtcacctcgaattcagcatcattgacaccaacaagac 1671 Query: 181 gtcctgtatggaggccgtcgatggcagttttgaactcaagctcgcctctaacaatttcat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1670 gtcctgtatggaggccgtcgatggcagttttgaactcaagctcgcctctaacaatttcat 1611 Query: 241 ctccggatccaccatgacgaatgtcaagctcaatcgtgagcggcatgtgcagcggcacgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1610 ctccggatccaccatgacgaatgtcaagctcaatcgtgagcggcatgtgcagcggcacgg 1551 Query: 301 caagcgcatgcctcgccaaggggaccagctccccaggtcgcacgcgcactccagcggcct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1550 caagcgcatgcctcgccaaggggaccagctccccaggtcgcacgcgcactccagcggcct 1491 Query: 361 cgttgtagaagagcacacagccgaaatcgaacagcttgctgcgagcaacgatcctgccga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1490 cgttgtagaagagcacacagccgaaatcgaacagcttgctgcgagcaacgatcctgccga 1431 Query: 421 cgagaaccacttcgtctcgggactgcaggccagcaagcttcacatcgacccggccttgga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1430 cgagaaccacttcgtctcgggactgcaggccagcaagcttcacatcgacccggccttgga 1371 Query: 481 cgccgttgcttagaactgcgtagatcacctccgcggggccgcagcgtgtgaggacagtct 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1370 cgccgttgcttagaactgcgtagatcacctccgcggggccgcagcgtgtgaggacagtct 1311 Query: 541 ctgatatggccttattatagttgggagaagtcgccgccaatggcgtcgcacactatcctt 600 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 1310 ctgatatggccttattatagtt-ggagaagtcgccgccaatggcgtcgcacactatcc-t 1253 Query: 601 cccggtgttcttttcatcctcctcctcgtcggcttg 636 |||||||||||||||||||||||||||||||||||| Sbjct: 1252 cccggtgttcttttcatcctcctcctcgtcggcttg 1217
>emb|AJ234729.1|HVU234729 Hordeum vulgare genomic DNA fragment; clone MWG2037.uni Length = 328 Score = 137 bits (69), Expect = 5e-29 Identities = 158/183 (86%), Gaps = 6/183 (3%) Strand = Plus / Plus Query: 455 aagcttcacatcgacccggccttggacgccgttgcttagaactgcgtagatcacctccgc 514 ||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||||||| Sbjct: 7 aagcttcacgtcgacccggccttggatgccattgcttaggacggcgtagatcacctccgc 66 Query: 515 ggggccgcagcgtgtg-aggacagtctctgatatggccttattatagttgggagaagtcg 573 |||||| ||| |||| | |||||||| ||||||||| | || ||||| ||||||||| Sbjct: 67 ggggccatagcctgtgccgtacagtctccgatatggccctgttgtagtt-agagaagtcg 125 Query: 574 ccgccaatggcgtcgcacactatccttcccggtgttcttttcatcctcctcctcgtcggc 633 |||||||||| |||||| ||||||| || |||||||| || ||||||||||||||||| Sbjct: 126 ccgccaatggtgtcgcagactatcc-tcgcggtgttc---tcttcctcctcctcgtcggc 181 Query: 634 ttg 636 ||| Sbjct: 182 ttg 184
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 117 bits (59), Expect = 5e-23 Identities = 136/161 (84%), Gaps = 3/161 (1%) Strand = Plus / Minus Query: 263 gtcaagctcaatcgtgagcggcatgtgcagcggcacggcaagcgcatgcctcgccaaggg 322 ||||||||||||||| ||||||||||||||||||||||| || || | ||||||||| | Sbjct: 706 gtcaagctcaatcgtcagcggcatgtgcagcggcacggcgagtgcttccctcgccaactg 647 Query: 323 gaccagctccccaggtcgcacgcgcactcca---gcggcctcgttgtagaagagcacaca 379 |||||| |||| ||||||||| ||||||| | |||| |||||||||||||| || Sbjct: 646 aaccagcccccccggtcgcacgttcactccattgtcaccctctttgtagaagagcacgca 587 Query: 380 gccgaaatcgaacagcttgctgcgagcaacgatcctgccga 420 ||| | || |||||||||||||||||||||||||| |||| Sbjct: 586 gccaacgtcaaacagcttgctgcgagcaacgatcctcccga 546 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 466 cgacccggccttggacgccgttgcttagaactgcgtagatcac 508 ||||||||||||||||||||||||| || || || |||||||| Sbjct: 485 cgacccggccttggacgccgttgctcaggacggcatagatcac 443
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 117 bits (59), Expect = 5e-23 Identities = 241/302 (79%), Gaps = 6/302 (1%) Strand = Plus / Plus Query: 117 taccaagggtactccgaccataagattgtcacctcgaattcagcatcattgacaccaaca 176 ||||||||||||| ||||||| | |||| ||| || |||||||| |||| | |||||| Sbjct: 169 taccaagggtactgcgaccatgaaattgccacttccaattcagcgccattttctccaaca 228 Query: 177 agacgtcctgtatggaggccgtcgatggcagttttgaactcaagctcgcctctaacaatt 236 || ||| | || || |||||| | | |||| ||||||||||| | |||| ||||||| Sbjct: 229 agtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctccaacaatt 288 Query: 237 tcatctccggatccaccatgacgaatgtcaagctcaatcgtgagcggcatgtgcagcggc 296 ||||| ||||| || || | | ||||||||||||||| |||||||||||||||||| Sbjct: 289 tcatcgccgga---acagcgatgcaggtcaagctcaatcgtcagcggcatgtgcagcggc 345 Query: 297 acggcaagcgcatgcctcgccaaggggaccagctccccaggtcgcacgcgcactcca--- 353 ||||| ||||| | ||||||||| | | ||||| ||||||||| ||||||| Sbjct: 346 acggcgagcgcttccctcgccaactgaatcagctnnnnnggtcgcacgttcactccattg 405 Query: 354 gcggcctcgttgtagaagagcacacagccgaaatcgaacagcttgctgcgagcaacgatc 413 | |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct: 406 tcaccctctttgtagaagagcacgcagccgacgtcgaacagcttgctgcgagcaacgatc 465 Query: 414 ct 415 || Sbjct: 466 ct 467 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 466 cgacccggccttggacgccgttgcttagaactgcgtagatcacctccgcggggcc 520 ||||||||||||||||||||||||| || || || |||||||| || |||||||| Sbjct: 533 cgacccggccttggacgccgttgctcaggacggcatagatcacttcagcggggcc 587
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 286 tgtgcagcggcacggcaagcgc 307 |||||||||||||||||||||| Sbjct: 1043253 tgtgcagcggcacggcaagcgc 1043232
>gb|AY135660.1| Aquifex pyrophilus hydrogenase small subunit (mbhS1) gene, partial cds; and hypothetical protein, phosphatidate cytidylytransferase (cds), undecaprenyl pyrophosphate (yaes), hypothetical protein, 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase (kdsA), molybdenum transport system permease (modB), riboflavin synthase beta subunit (ribH), transcription termination factor (nusB), hypothetical protein, NADH dehydrogenase (nuo), cytochrome c peroxidase (ccpR), heat shock protein 70 (dnaK), and hypothetical protein genes, complete cds Length = 12698 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ccgacgagaaccacttcgtct 437 ||||||||||||||||||||| Sbjct: 9770 ccgacgagaaccacttcgtct 9750
>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence Length = 105161 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 ttcttttcatcctcctcctcg 628 ||||||||||||||||||||| Sbjct: 79189 ttcttttcatcctcctcctcg 79209
>emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in linkage group 5, complete sequence Length = 149707 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 ggtatgtgtcaaggaaagaca 42 ||||||||||||||||||||| Sbjct: 27383 ggtatgtgtcaaggaaagaca 27363
>emb|AJ005800.1|APH5800 Aquifex pyrophilus dnaK gene, partial Length = 1820 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ccgacgagaaccacttcgtct 437 ||||||||||||||||||||| Sbjct: 1031 ccgacgagaaccacttcgtct 1011
>ref|XM_631318.1| Dictyostelium discoideum ADP-ribosylation factor-like protein (DDB0229377), partial mRNA Length = 588 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tatttgtagttgatagtagt 95 |||||||||||||||||||| Sbjct: 203 tatttgtagttgatagtagt 222
>gb|AE017140.1| Yersinia pestis biovar Medievalis str. 91001 section 14 of 16 of the complete genome Length = 290393 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gctcaatcgtgagcggcatg 287 |||||||||||||||||||| Sbjct: 215761 gctcaatcgtgagcggcatg 215780
>ref|XM_369803.1| Magnaporthe grisea 70-15 hypothetical protein (MG06318.4) partial mRNA Length = 3699 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 tcatcctcctcctcgtcggc 633 |||||||||||||||||||| Sbjct: 983 tcatcctcctcctcgtcggc 964
>ref|XM_421760.1| PREDICTED: Gallus gallus transcription factor Tcf4 (TCF4), mRNA Length = 4491 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 608 ttcttttcatcctcctcctcgtcg 631 |||||||| ||||||||||||||| Sbjct: 3979 ttcttttcctcctcctcctcgtcg 4002
>gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosome 16, complete sequence Length = 211002 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gaccagctccccaggtcgca 342 |||||||||||||||||||| Sbjct: 153238 gaccagctccccaggtcgca 153219
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gttgtagaagagcacacagc 381 |||||||||||||||||||| Sbjct: 159141 gttgtagaagagcacacagc 159160
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 gcagcggcacggcaagcgcatgcc 312 ||||||||||||||||||| |||| Sbjct: 2556779 gcagcggcacggcaagcgcgtgcc 2556802
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gctcaatcgtgagcggcatg 287 |||||||||||||||||||| Sbjct: 3650813 gctcaatcgtgagcggcatg 3650794
>gb|AC122509.2| Mus musculus BAC clone RP24-443G20 from chromosome 16, complete sequence Length = 178757 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gaccagctccccaggtcgca 342 |||||||||||||||||||| Sbjct: 51098 gaccagctccccaggtcgca 51079
>ref|XM_802673.1| Trypanosoma cruzi strain CL Brener DNA excision repair protein (Tc00.1047053508675.20) partial mRNA Length = 3357 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 tttcatcctcctcctcgtcg 631 |||||||||||||||||||| Sbjct: 2320 tttcatcctcctcctcgtcg 2301
>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 10 aaaatacaaattggtatgtgtcaaggaa 37 |||||| |||| |||||||||||||||| Sbjct: 35506 aaaataaaaataggtatgtgtcaaggaa 35533
>ref|XM_813897.1| Trypanosoma cruzi strain CL Brener cyclin (Tc00.1047053506945.270) partial mRNA Length = 636 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 ggtgttcttttcatcctcct 623 |||||||||||||||||||| Sbjct: 609 ggtgttcttttcatcctcct 590
>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence Length = 270722 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atatattagaaaatacaaat 20 |||||||||||||||||||| Sbjct: 67332 atatattagaaaatacaaat 67313
>emb|AL158046.12| Human DNA sequence from clone RP5-1092K5 on chromosome 10 Contains part of the gene for a novel protein (KIAA1617) and a cytochrome c oxidase subunit VIc (COX6) pseudogene, complete sequence Length = 119265 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 gttcttttcatcctcctcct 626 |||||||||||||||||||| Sbjct: 12175 gttcttttcatcctcctcct 12194
>emb|Y16952.3|AME16952 Amycolatopsis balhimycina biosynthetic gene cluster for balhimycin, strain DSM 5908 Length = 66669 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 gcgtagatcacctccgcggggccg 521 ||||||||||| |||||||||||| Sbjct: 44592 gcgtagatcacgtccgcggggccg 44569
>emb|Y14649.1|RLDNAKJ Rhizobium leguminosarum dnaK gene and partial dnaJ gene Length = 2934 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 ccgacgagaaccacttcgtc 436 |||||||||||||||||||| Sbjct: 1236 ccgacgagaaccacttcgtc 1217
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gaaatcgaacagcttgctgc 402 |||||||||||||||||||| Sbjct: 250392 gaaatcgaacagcttgctgc 250373
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gctcaatcgtgagcggcatg 287 |||||||||||||||||||| Sbjct: 3768518 gctcaatcgtgagcggcatg 3768499
>emb|AL645800.5| Zebrafish DNA sequence from clone XX-184L24 Contains three novel genes and the spi1 gene for transcription factor spi1, complete sequence Length = 98204 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atatattagaaaatacaaat 20 |||||||||||||||||||| Sbjct: 31343 atatattagaaaatacaaat 31362
>emb|AJ414145.1| Yersinia pestis strain CO92 complete genome; segment 5/20 Length = 208050 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gctcaatcgtgagcggcatg 287 |||||||||||||||||||| Sbjct: 111744 gctcaatcgtgagcggcatg 111725
>gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, complete sequence Length = 175627 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tatattagaaaatacaaatt 21 |||||||||||||||||||| Sbjct: 59078 tatattagaaaatacaaatt 59059
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 ggcgtcgcacactatccttc 601 |||||||||||||||||||| Sbjct: 1169085 ggcgtcgcacactatccttc 1169104
>gb|AY113531.1| Drosophila melanogaster RE60835 full insert cDNA Length = 925 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 tttcatcctcctcctcgtcg 631 |||||||||||||||||||| Sbjct: 699 tttcatcctcctcctcgtcg 680
>ref|NM_135833.2| Drosophila melanogaster CG16865-RA (CG16865), mRNA Length = 915 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 tttcatcctcctcctcgtcg 631 |||||||||||||||||||| Sbjct: 699 tttcatcctcctcctcgtcg 680
>gb|DQ311189.1| Bombyx mori heat shock protein 70 mRNA, complete cds Length = 2266 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 accaacaagacgtcctgtat 189 |||||||||||||||||||| Sbjct: 1270 accaacaagacgtcctgtat 1251
>gb|AC092236.1|AC092236 Drosophila melanogaster, chromosome 2L, region 34D-34D, BAC clone BACR30I21, complete sequence Length = 161682 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 tttcatcctcctcctcgtcg 631 |||||||||||||||||||| Sbjct: 142340 tttcatcctcctcctcgtcg 142321
>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone BACR16P12, complete sequence Length = 171598 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 tttcatcctcctcctcgtcg 631 |||||||||||||||||||| Sbjct: 9483 tttcatcctcctcctcgtcg 9464
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gttgtagaagagcacacagc 381 |||||||||||||||||||| Sbjct: 24090652 gttgtagaagagcacacagc 24090671
>gb|AC008744.6|AC008744 Homo sapiens chromosome 19 clone CTD-2561O20, complete sequence Length = 203200 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 actgcaggccagcaagcttc 461 |||||||||||||||||||| Sbjct: 104383 actgcaggccagcaagcttc 104364
>gb|AY752744.1| Rhizobium leguminosarum strain ATCC 10004 DnaK gene, complete cds Length = 1917 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 ccgacgagaaccacttcgtc 436 |||||||||||||||||||| Sbjct: 1007 ccgacgagaaccacttcgtc 988
>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete sequence Length = 304772 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 tttcatcctcctcctcgtcg 631 |||||||||||||||||||| Sbjct: 158855 tttcatcctcctcctcgtcg 158836
>emb|AL954855.8| Mouse DNA sequence from clone RP23-211L10 on chromosome X, complete sequence Length = 87910 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 agaaaatacaaattggtatg 27 |||||||||||||||||||| Sbjct: 35463 agaaaatacaaattggtatg 35482
>gb|AC169630.2| Mus musculus BAC clone RP23-465E13 from chromosome 16, complete sequence Length = 186404 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gaccagctccccaggtcgca 342 |||||||||||||||||||| Sbjct: 35474 gaccagctccccaggtcgca 35455 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,008,535 Number of Sequences: 3902068 Number of extensions: 5008535 Number of successful extensions: 97385 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97112 Number of HSP's gapped (non-prelim): 268 length of query: 636 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 613 effective length of database: 17,143,297,704 effective search space: 10508841492552 effective search space used: 10508841492552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
