ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36m04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT025546.10| Zebrafish DNA sequence from clone DKEY-105J11 i... 38 6.1
2emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chrom... 38 6.1
3gb|AC092965.4| Homo sapiens 3 BAC RP11-440K22 (Roswell Park Canc... 38 6.1
4gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, comple... 38 6.1
5emb|CR631129.10| Zebrafish DNA sequence from clone DKEY-218L8 in... 38 6.1
6emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chro... 38 6.1

>emb|CT025546.10| Zebrafish DNA sequence from clone DKEY-105J11 in linkage group 18,
             complete sequence
          Length = 210488

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 52    tacaccaccgccgccatac 70
             |||||||||||||||||||
Sbjct: 67243 tacaccaccgccgccatac 67225



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>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the 5'
             end of a novel pseudogene and a guanylate binding protein
             pseudogene, complete sequence
          Length = 68235

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aggtagatagataggcatg 44
             |||||||||||||||||||
Sbjct: 65819 aggtagatagataggcatg 65837



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>gb|AC092965.4| Homo sapiens 3 BAC RP11-440K22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187033

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    aggtagatagataggcatg 44
             |||||||||||||||||||
Sbjct: 52835 aggtagatagataggcatg 52853



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>gb|AC105460.4| Homo sapiens BAC clone RP11-297P16 from 4, complete sequence
          Length = 185755

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    aggtagatagataggcatg 44
             |||||||||||||||||||
Sbjct: 63728 aggtagatagataggcatg 63710



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>emb|CR631129.10| Zebrafish DNA sequence from clone DKEY-218L8 in linkage group 19,
             complete sequence
          Length = 63643

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    tacaccaccgccgccatac 70
             |||||||||||||||||||
Sbjct: 37169 tacaccaccgccgccatac 37187



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>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete
             sequence
          Length = 101854

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    aggtagatagataggcatg 44
             |||||||||||||||||||
Sbjct: 44147 aggtagatagataggcatg 44129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,354,305
Number of Sequences: 3902068
Number of extensions: 1354305
Number of successful extensions: 42591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42585
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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