ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 3e-55
2gb|AY107890.1| Zea mays PCO143404 mRNA sequence 145 2e-31
3ref|XM_472288.1| Oryza sativa (japonica cultivar-group), predic... 123 8e-25
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 105 2e-19
6emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 ... 56 2e-04
7gb|AE006470.1| Chlorobium tepidum TLS, complete genome 46 0.15
8gb|AC109778.8| Homo sapiens 3 BAC RP11-17O13 (Roswell Park Cance... 44 0.59
9gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H... 44 0.59
10gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, compl... 44 0.59
11gb|AC166099.2| Mus musculus BAC clone RP24-254H22 from chromosom... 44 0.59
12gb|AC166360.4| Mus musculus BAC clone RP24-497L5 from chromosome... 44 0.59
13emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chr... 44 0.59
14ref|NM_112491.5| Arabidopsis thaliana unknown protein AT3G16200 ... 42 2.3
15ref|XM_368087.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 2.3
16gb|AC087675.9| Homo sapiens chromosome 18, clone RP11-871M19, co... 42 2.3
17gb|AC087399.7| Homo sapiens chromosome 18, clone RP11-451L19, co... 42 2.3
18gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosom... 42 2.3
19emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in... 42 2.3
20gb|AY128888.1| Arabidopsis thaliana unknown protein (At3g16200) ... 42 2.3
21gb|AC108516.5| Homo sapiens BAC clone RP11-529H2 from 4, complet... 42 2.3
22gb|AY099696.1| Arabidopsis thaliana unknown protein (At3g16200) ... 42 2.3
23emb|BX822287.1|CNS0A73V Arabidopsis thaliana Full-length cDNA Co... 42 2.3
24emb|BX822858.1|CNS0A71O Arabidopsis thaliana Full-length cDNA Co... 42 2.3
25emb|BX823343.1|CNS0A6IT Arabidopsis thaliana Full-length cDNA Co... 42 2.3
26dbj|AB023046.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.3
27gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 40 9.3
28gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, co... 40 9.3
29gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, compl... 40 9.3
30emb|Z81479.1|CEC34F6 Caenorhabditis elegans Cosmid C34F6, comple... 40 9.3
31gb|AC107883.6| Homo sapiens chromosome 15, clone CTD-2318C11, co... 40 9.3
32gb|AC127365.4| Mus musculus BAC clone RP23-8K10 from 3, complete... 40 9.3
33gb|AC107806.10| Mus musculus chromosome 3, clone RP23-55C1, comp... 40 9.3
34gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 9.3
35gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 9.3
36gb|AC110003.2| Homo sapiens chromosome 5 clone RP11-166A12, comp... 40 9.3
37emb|AL645702.14| Mouse DNA sequence from clone RP23-163J17 on ch... 40 9.3
38gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Can... 40 9.3
39gb|AC011484.7| Homo sapiens chromosome 19 clone CTB-158D10, comp... 40 9.3
40gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, comp... 40 9.3
41gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 ma... 40 9.3
42gb|AC009036.7| Homo sapiens chromosome 16 clone RP11-142L23, com... 40 9.3
43gb|AC013526.7| Homo sapiens, clone RP11-114I24, complete sequence 40 9.3
44gb|AC009063.8| Homo sapiens chromosome 16 clone RP11-298D21, com... 40 9.3
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
46emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in ... 40 9.3
47gb|AC022692.11| Homo sapiens chromosome 15, clone RP11-530L17, c... 40 9.3
48gb|AC012320.6|AC012320 Homo sapiens chromosome 16 clone RP11-280... 40 9.3
49gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complet... 40 9.3
50gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, co... 40 9.3
51dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
52dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
53gb|BC070710.1| Xenopus laevis Myc binding protein Xmax2, mRNA (c... 40 9.3
54ref|XM_318505.2| Anopheles gambiae str. PEST ENSANGP00000021750 ... 40 9.3
55gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 40 9.3
56emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in... 40 9.3
57emb|BX296531.5| Mouse DNA sequence from clone RP24-82I9 on chrom... 40 9.3
58emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chr... 40 9.3
59dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 9.3
60gb|AC165416.12| Mus musculus chromosome 3, clone RP23-86I19, com... 40 9.3
61gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 9.3 
>dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D01, full
            insert sequence
          Length = 1310

 Score =  224 bits (113), Expect = 3e-55
 Identities = 224/261 (85%)
 Strand = Plus / Minus

                                                                        
Query: 417  tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 476
            ||||||||||||||| || |||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 1014 tcacactgagcaaggactctgccacattgatatgtccgatattaaatcatggagttggtc 955

                                                                        
Query: 477  gatgaggagctttagttgtttgtttttgcttccaatttcctttctcaaagaagatgcatg 536
            ||| ||||||||||  || |||||||||||| |||||||||||||||||| |||||||||
Sbjct: 954  gataaggagctttacatgcttgtttttgctttcaatttcctttctcaaagcagatgcatg 895

                                                                        
Query: 537  ctcttccaatctctcaatctcggcttgatcacctttggattctgttggccccggctcctg 596
             |||||||||||||||||||| ||||||||| |||||  |||||| |  |||  ||||||
Sbjct: 894  ttcttccaatctctcaatctcagcttgatcagctttgtgttctgtcgatcccatctcctg 835

                                                                        
Query: 597  agtagagggtgacaccgcggcaatggacgcacgcaaagccgccacggcgatcttgtaccg 656
            || | |||  ||||| ||||| |||||||  || |  ||||||| ||||| |||||||||
Sbjct: 834  agcacaggacgacacggcggcgatggacgtgcggagcgccgccatggcgaccttgtaccg 775

                                 
Query: 657  gtgcctcgcctcgtcgagcga 677
            |||||| ||||||||||||||
Sbjct: 774  gtgcctggcctcgtcgagcga 754
to top
>gb|AY107890.1| Zea mays PCO143404 mRNA sequence
          Length = 645

 Score =  145 bits (73), Expect = 2e-31
 Identities = 124/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 417 tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 476
           |||||| ||||||||||| |||||||| | ||  || | |||||| |||||||| |||||
Sbjct: 482 tcacacagagcaagggctctgccacatggctacgtcagttattaggtcacggagctgatc 541

                                                                       
Query: 477 gatgaggagctttagttgtttgtttttgcttccaatttcctttctcaaagaagatgcatg 536
            ||||||||||||| ||| |||||||||||| ||||||||||||| |||| ||| |||||
Sbjct: 542 catgaggagctttacttgcttgtttttgctttcaatttcctttcttaaagcagaagcatg 601

                                
Query: 537 ctcttccaatctctcaatctc 557
           |||||||||||||||||||||
Sbjct: 602 ctcttccaatctctcaatctc 622
to top
>ref|XM_472288.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 594

 Score =  123 bits (62), Expect = 8e-25
 Identities = 137/162 (84%)
 Strand = Plus / Minus

                                                                       
Query: 516 ctttctcaaagaagatgcatgctcttccaatctctcaatctcggcttgatcacctttgga 575
           ||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||  
Sbjct: 495 ctttctcaaagcagatgcatgttcttccaatctctcaatctcagcttgatcagctttgtg 436

                                                                       
Query: 576 ttctgttggccccggctcctgagtagagggtgacaccgcggcaatggacgcacgcaaagc 635
           |||||| |  |||  |||||||| | |||  ||||| ||||| |||||||  || |  ||
Sbjct: 435 ttctgtcgatcccatctcctgagcacaggacgacacggcggcgatggacgtgcggagcgc 376

                                                     
Query: 636 cgccacggcgatcttgtaccggtgcctcgcctcgtcgagcga 677
           ||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 375 cgccatggcgaccttgtaccggtgcctggcctcgtcgagcga 334
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                            
Query: 417      tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 476
                ||||||||||||||| || |||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 19125105 tcacactgagcaaggactctgccacattgatatgtccgatattaaatcatggagttggtc 19125164

                                                         
Query: 477      gatgaggagctttagttgtttgtttttgcttccaatttcct 517
                ||| ||||||||||  || |||||||||||| |||||||||
Sbjct: 19125165 gataaggagctttacatgcttgtttttgctttcaatttcct 19125205



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 515      cctttctcaaagaagatgcatgctcttccaatctctcaatctcggcttgatcacctttg 573
                |||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct: 19126773 cctttctcaaagcagatgcatgttcttccaatctctcaatctcagcttgatcagctttg 19126831



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 634      gccgccacggcgatcttgtaccggtgcctcgcctcgtcgagcga 677
                ||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 19127321 gccgccatggcgaccttgtaccggtgcctggcctcgtcgagcga 19127364
to top
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                         
Query: 417   tcacactgagcaagggctttgccacattgatatatctgatattagatcacggagttgatc 476
             ||||||||||||||| || |||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 58626 tcacactgagcaaggactctgccacattgatatgtccgatattaaatcatggagttggtc 58685

                                                      
Query: 477   gatgaggagctttagttgtttgtttttgcttccaatttcct 517
             ||| ||||||||||  || |||||||||||| |||||||||
Sbjct: 58686 gataaggagctttacatgcttgtttttgctttcaatttcct 58726



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                        
Query: 515   cctttctcaaagaagatgcatgctcttccaatctctcaatctcggcttgatcacctttg 573
             |||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct: 60294 cctttctcaaagcagatgcatgttcttccaatctctcaatctcagcttgatcagctttg 60352



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 634   gccgccacggcgatcttgtaccggtgcctcgcctcgtcgagcga 677
             ||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 60842 gccgccatggcgaccttgtaccggtgcctggcctcgtcgagcga 60885
to top
>emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3,
           complete sequence
          Length = 104085

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 515 cctttctcaaagaagatgcatgctcttccaatctctcaat 554
           |||||||||||||||| || |||||||||||| |||||||
Sbjct: 229 cctttctcaaagaagaggcttgctcttccaatttctcaat 268
to top
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 624    cgcacgcaaagccgccacggcga 646
              |||||||||||||||||||||||
Sbjct: 386265 cgcacgcaaagccgccacggcga 386243
to top
>gb|AC109778.8| Homo sapiens 3 BAC RP11-17O13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 69333

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 497   tgtttttgcttccaatttcctt 518
             ||||||||||||||||||||||
Sbjct: 43808 tgtttttgcttccaatttcctt 43787
to top
>gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H6, complete sequence
          Length = 123169

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 126   agacagaaaatagaagaatagc 147
             ||||||||||||||||||||||
Sbjct: 97114 agacagaaaatagaagaatagc 97093
to top
>gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, complete sequence
          Length = 126052

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 126   agacagaaaatagaagaatagc 147
             ||||||||||||||||||||||
Sbjct: 84439 agacagaaaatagaagaatagc 84460
to top
>gb|AC166099.2| Mus musculus BAC clone RP24-254H22 from chromosome 17, complete
             sequence
          Length = 164625

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 487   tttagttgtttgtttttgcttc 508
             ||||||||||||||||||||||
Sbjct: 71895 tttagttgtttgtttttgcttc 71916
to top
>gb|AC166360.4| Mus musculus BAC clone RP24-497L5 from chromosome 17, complete sequence
          Length = 201109

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 487   tttagttgtttgtttttgcttc 508
             ||||||||||||||||||||||
Sbjct: 48682 tttagttgtttgtttttgcttc 48703
to top
>emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chromosome 11, complete
            sequence
          Length = 167123

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 422  ctgagcaagggctttgccacattgat 447
            |||||||| |||||||||||||||||
Sbjct: 5165 ctgagcaaaggctttgccacattgat 5140



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 422  ctgagcaagggctttgccacattgat 447
            |||||||| |||||||||||||||||
Sbjct: 4913 ctgagcaaaggctttgccacattgat 4888
to top
>ref|NM_112491.5| Arabidopsis thaliana unknown protein AT3G16200 mRNA, complete cds
          Length = 1608

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 ttgcttccaatttcctttctc 522
           |||||||||||||||||||||
Sbjct: 203 ttgcttccaatttcctttctc 223
to top
>ref|XM_368087.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG01157.4) partial mRNA
          Length = 1464

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 640  acggcgatcttgtaccggtgc 660
            |||||||||||||||||||||
Sbjct: 1079 acggcgatcttgtaccggtgc 1059
to top
>gb|AC087675.9| Homo sapiens chromosome 18, clone RP11-871M19, complete sequence
          Length = 168201

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    atcctcagacagaaaatagaa 140
              |||||||||||||||||||||
Sbjct: 155258 atcctcagacagaaaatagaa 155238
to top
>gb|AC087399.7| Homo sapiens chromosome 18, clone RP11-451L19, complete sequence
          Length = 171320

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   atcctcagacagaaaatagaa 140
             |||||||||||||||||||||
Sbjct: 83032 atcctcagacagaaaatagaa 83012
to top
>gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosome 9, complete sequence
          Length = 215017

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 495    tttgtttttgcttccaatttccttt 519
              ||||||||||||||||||| |||||
Sbjct: 105124 tttgtttttgcttccaattcccttt 105148
to top
>emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in linkage group 9, complete
              sequence
          Length = 219065

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    aatacagcacaatttcacaat 279
              |||||||||||||||||||||
Sbjct: 102021 aatacagcacaatttcacaat 102041
to top
>gb|AY128888.1| Arabidopsis thaliana unknown protein (At3g16200) mRNA, complete cds
          Length = 1485

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 ttgcttccaatttcctttctc 522
           |||||||||||||||||||||
Sbjct: 113 ttgcttccaatttcctttctc 133
to top
>gb|AC108516.5| Homo sapiens BAC clone RP11-529H2 from 4, complete sequence
          Length = 186202

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   agacagaaaatagaagaatag 146
             |||||||||||||||||||||
Sbjct: 52737 agacagaaaatagaagaatag 52717
to top
>gb|AY099696.1| Arabidopsis thaliana unknown protein (At3g16200) mRNA, complete cds
          Length = 1555

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 ttgcttccaatttcctttctc 522
           |||||||||||||||||||||
Sbjct: 150 ttgcttccaatttcctttctc 170
to top
>emb|BX822287.1|CNS0A73V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZD12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1516

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 ttgcttccaatttcctttctc 522
           |||||||||||||||||||||
Sbjct: 139 ttgcttccaatttcctttctc 159
to top
>emb|BX822858.1|CNS0A71O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB69ZF01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1477

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 ttgcttccaatttcctttctc 522
           |||||||||||||||||||||
Sbjct: 139 ttgcttccaatttcctttctc 159
to top
>emb|BX823343.1|CNS0A6IT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS25ZB06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1565

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 502 ttgcttccaatttcctttctc 522
           |||||||||||||||||||||
Sbjct: 178 ttgcttccaatttcctttctc 198
to top
>dbj|AB023046.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6
          Length = 75289

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 502  ttgcttccaatttcctttctc 522
            |||||||||||||||||||||
Sbjct: 6291 ttgcttccaatttcctttctc 6271
to top
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   ttgtttgtttttgcttccaa 511
             ||||||||||||||||||||
Sbjct: 41046 ttgtttgtttttgcttccaa 41027
to top
>gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, complete sequence
          Length = 170056

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   acttgtaggaattgattagc 407
             ||||||||||||||||||||
Sbjct: 28316 acttgtaggaattgattagc 28297
to top
>gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, complete sequence
          Length = 174774

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   acttgtaggaattgattagc 407
             ||||||||||||||||||||
Sbjct: 47827 acttgtaggaattgattagc 47846
to top
>emb|Z81479.1|CEC34F6 Caenorhabditis elegans Cosmid C34F6, complete sequence
          Length = 44369

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gctcgttacatttctcaaat 248
             ||||||||||||||||||||
Sbjct: 40027 gctcgttacatttctcaaat 40008
to top
>gb|AC107883.6| Homo sapiens chromosome 15, clone CTD-2318C11, complete sequence
          Length = 43603

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 404   tagcagtgacaactcacactgagc 427
             ||||||||||| ||||||||||||
Sbjct: 22912 tagcagtgacagctcacactgagc 22935
to top
>gb|AC127365.4| Mus musculus BAC clone RP23-8K10 from 3, complete sequence
          Length = 191217

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    gttaaatcctcagacagaaa 134
              ||||||||||||||||||||
Sbjct: 140673 gttaaatcctcagacagaaa 140654
to top
>gb|AC107806.10| Mus musculus chromosome 3, clone RP23-55C1, complete sequence
          Length = 214411

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    gttaaatcctcagacagaaa 134
              ||||||||||||||||||||
Sbjct: 137347 gttaaatcctcagacagaaa 137366
to top
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 553     atctcggcttgatcaccttt 572
               ||||||||||||||||||||
Sbjct: 3666258 atctcggcttgatcaccttt 3666277
to top
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 459    tagatcacggagttgatcgatgaggagc 486
              ||||||| || |||||||||||||||||
Sbjct: 228537 tagatcatggcgttgatcgatgaggagc 228510
to top
>gb|AC110003.2| Homo sapiens chromosome 5 clone RP11-166A12, complete sequence
          Length = 89858

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    acaaaagaaaagaaagggag 91
             ||||||||||||||||||||
Sbjct: 59395 acaaaagaaaagaaagggag 59376
to top
>emb|AL645702.14| Mouse DNA sequence from clone RP23-163J17 on chromosome 1 Contains a
             ribosomal protein S2 (Rps2) pseudogene, a tigger
             transposable element derived 1 (TIGD1) pseudogene and a
             ribosomal protein L17 (Rpl17) pseudogene, complete
             sequence
          Length = 205103

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    acaaaagaaaagaaagggag 91
             ||||||||||||||||||||
Sbjct: 89248 acaaaagaaaagaaagggag 89229
to top
>gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106673

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   agcaaatctacatttaacac 227
             ||||||||||||||||||||
Sbjct: 95158 agcaaatctacatttaacac 95177
to top
>gb|AC011484.7| Homo sapiens chromosome 19 clone CTB-158D10, complete sequence
          Length = 112351

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ttaaatcctcagacagaaaa 135
             ||||||||||||||||||||
Sbjct: 38775 ttaaatcctcagacagaaaa 38756
to top
>gb|AC099337.2| Homo sapiens chromosome 1 clone RP11-365M20, complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     aaaagaaaagaaagggagca 93
              ||||||||||||||||||||
Sbjct: 106968 aaaagaaaagaaagggagca 106949
to top
>gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete
             sequence
          Length = 115359

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   tcttgggacttgtaggaatt 400
             ||||||||||||||||||||
Sbjct: 93509 tcttgggacttgtaggaatt 93490
to top
>gb|AC009036.7| Homo sapiens chromosome 16 clone RP11-142L23, complete sequence
          Length = 193790

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 368   taactatcagatctcttgggactt 391
             |||||||||||||||||| |||||
Sbjct: 60046 taactatcagatctcttgagactt 60023
to top
>gb|AC013526.7| Homo sapiens, clone RP11-114I24, complete sequence
          Length = 156895

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   agctttagttgtttgttttt 503
             ||||||||||||||||||||
Sbjct: 79188 agctttagttgtttgttttt 79169
to top
>gb|AC009063.8| Homo sapiens chromosome 16 clone RP11-298D21, complete sequence
          Length = 194237

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 368    taactatcagatctcttgggactt 391
              |||||||||||||||||| |||||
Sbjct: 178224 taactatcagatctcttgagactt 178201
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 488      ttagttgtttgtttttgctt 507
                ||||||||||||||||||||
Sbjct: 21778784 ttagttgtttgtttttgctt 21778765
to top
>emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in linkage group 4, complete
              sequence
          Length = 211817

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    attggagccgatgttaaatc 122
              ||||||||||||||||||||
Sbjct: 148830 attggagccgatgttaaatc 148811
to top
>gb|AC022692.11| Homo sapiens chromosome 15, clone RP11-530L17, complete sequence
          Length = 173604

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   agctttagttgtttgttttt 503
             ||||||||||||||||||||
Sbjct: 42448 agctttagttgtttgttttt 42467
to top
>gb|AC012320.6|AC012320 Homo sapiens chromosome 16 clone RP11-280N16, complete sequence
          Length = 189840

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 368    taactatcagatctcttgggactt 391
              |||||||||||||||||| |||||
Sbjct: 118382 taactatcagatctcttgagactt 118359
to top
>gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complete sequence
          Length = 132626

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   actagcaaatctacatttaa 224
             ||||||||||||||||||||
Sbjct: 51775 actagcaaatctacatttaa 51794
to top
>gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, complete sequence
          Length = 157793

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 404    tagcagtgacaactcacactgagc 427
              ||||||||||| ||||||||||||
Sbjct: 155856 tagcagtgacagctcacactgagc 155833
to top
>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0610D01
          Length = 146418

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   ttagttgtttgtttttgctt 507
             ||||||||||||||||||||
Sbjct: 36865 ttagttgtttgtttttgctt 36846
to top
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0006A22
          Length = 190690

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 488  ttagttgtttgtttttgctt 507
            ||||||||||||||||||||
Sbjct: 1269 ttagttgtttgtttttgctt 1250
to top
>gb|BC070710.1| Xenopus laevis Myc binding protein Xmax2, mRNA (cDNA clone MGC:83462
            IMAGE:6643884), complete cds
          Length = 3770

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  tttttgcttccaatttcctttctc 522
            ||||| ||||||||||||||||||
Sbjct: 2069 tttttccttccaatttcctttctc 2046
to top
>ref|XM_318505.2| Anopheles gambiae str. PEST ENSANGP00000021750
           (ENSANGG00000019261), partial mRNA
          Length = 762

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 tcttccaatctctcaatctc 557
           ||||||||||||||||||||
Sbjct: 518 tcttccaatctctcaatctc 499
to top
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    ttgtttgtttttgcttccaa 511
              ||||||||||||||||||||
Sbjct: 189291 ttgtttgtttttgcttccaa 189310
to top
>emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in linkage group 4,
             complete sequence
          Length = 228177

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   attggagccgatgttaaatc 122
             ||||||||||||||||||||
Sbjct: 62936 attggagccgatgttaaatc 62955
to top
>emb|BX296531.5| Mouse DNA sequence from clone RP24-82I9 on chromosome 2, complete
            sequence
          Length = 24885

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  tttagttgtttgtttttgct 506
            ||||||||||||||||||||
Sbjct: 8881 tttagttgtttgtttttgct 8862
to top
>emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chromosome 2, complete
              sequence
          Length = 204136

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     acaaaagaaaagaaagggag 91
              ||||||||||||||||||||
Sbjct: 103834 acaaaagaaaagaaagggag 103815
to top
>dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT31L14, TM0366,
             complete sequence
          Length = 100936

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    cacaaaagaaaagaaaggga 90
             ||||||||||||||||||||
Sbjct: 12174 cacaaaagaaaagaaaggga 12155
to top
>gb|AC165416.12| Mus musculus chromosome 3, clone RP23-86I19, complete sequence
          Length = 130155

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    cactgatcacaaaagaaaagaaag 87
             ||||||||| ||||||||||||||
Sbjct: 16990 cactgatcagaaaagaaaagaaag 16967
to top
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   ttgtttgtttttgcttccaa 511
             ||||||||||||||||||||
Sbjct: 96871 ttgtttgtttttgcttccaa 96852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,578,061
Number of Sequences: 3902068
Number of extensions: 7578061
Number of successful extensions: 183012
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 182674
Number of HSP's gapped (non-prelim): 335
length of query: 679
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 656
effective length of database: 17,143,297,704
effective search space: 11246003293824
effective search space used: 11246003293824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top