ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37a13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AT10A_HUMAN (O60312) Probable phospholipid-transporting ATPase V... 29 8.9
2AT10A_MOUSE (O54827) Probable phospholipid-transporting ATPase V... 29 8.9

>AT10A_HUMAN (O60312) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)|
           (ATPVA) (Aminophospholipid translocase VA)
          Length = 1499

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 434 HQRTGARAVSKRATISSHHHIMSS 363
           H+RTG+RA +KRA++ S H   SS
Sbjct: 502 HRRTGSRAEAKRASMLSKHTAFSS 525



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>AT10A_MOUSE (O54827) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)|
           (P-locus fat-associated ATPase)
          Length = 1508

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 434 HQRTGARAVSKRATISSHHHIMSS 363
           H+RTG+RA +KRA++ S H   SS
Sbjct: 506 HRRTGSRAEAKRASMLSKHTAFSS 529


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,239,422
Number of Sequences: 219361
Number of extensions: 870425
Number of successful extensions: 1652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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