Clone Name	rbags37a08
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_466605.1| Oryza sativa (japonica cultivar-group), mRNA	482	e-133
2	ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group...	482	e-133
3	dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clon...	482	e-133
4	dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clon...	482	e-133
5	gb|AY224457.1| Oryza sativa (japonica cultivar-group) isolate 23...	478	e-131
6	gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synth...	335	1e-88
7	gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence	168	1e-38
8	gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds	168	1e-38
9	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	157	5e-35
10	dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D...	157	5e-35
11	gb|AY184810.1| Catharanthus roseus GCPE protein mRNA, complete cds	141	3e-30
12	gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synth...	119	1e-23
13	gb|AY497303.1| Nicotiana benthamiana (E)-4-hydroxy-3-methylbut-2...	101	3e-18
14	ref|NM_125453.4| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENES...	100	1e-17
15	ref|NM_180902.2| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENES...	100	1e-17
16	gb|AF434673.1| Arabidopsis thaliana GcpE mRNA, complete cds; nuc...	100	1e-17
17	gb|BT010473.1| Arabidopsis thaliana At5g60600 gene, complete cds	100	1e-17
18	gb|AY094472.1| Arabidopsis thaliana AT5g60600/mup24_10 mRNA, com...	100	1e-17
19	gb|AY081261.1| Arabidopsis thaliana GcpE protein (At5g60600) mRN...	100	1e-17
20	emb|BX833711.1|CNS09Z1Y Arabidopsis thaliana Full-length cDNA Co...	76	2e-10
21	dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	74	6e-10
22	gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome	68	4e-08
23	gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple...	68	4e-08
24	dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome	68	4e-08
25	emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g...	66	1e-07
26	gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome	64	6e-07
27	emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome	56	1e-04
28	gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome	50	0.009
29	emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;...	50	0.009
30	gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome	50	0.009
31	gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1...	50	0.009
32	gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome	48	0.034
33	gb|AY860817.1| Chlamydomonas reinhardtii putative chloroplast 1-...	46	0.14
34	ref|NM_001026389.1| Caenorhabditis elegans PaTched Related famil...	44	0.54
35	ref|NM_001026388.1| Caenorhabditis elegans PaTched Related famil...	44	0.54
36	gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete seq...	44	0.54
37	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.54
38	gb|U14530.1|OVU14530 Onchocerca volvulus Ovl3-1 mRNA, partial cds	42	2.1
39	gb|AY508697.1| Bovine enterovirus type 2 strain 3A, complete genome	40	8.4
40	gb|AC113540.12| Mus musculus chromosome 17, clone RP23-158F13, c...	40	8.4
41	gb|AC123678.19| Mus musculus chromosome 3, clone RP23-276A22, co...	40	8.4
42	emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 i...	40	8.4
43	gb|AC125044.3| Mus musculus BAC clone RP23-348B10 from chromosom...	40	8.4
44	gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, com...	40	8.4
45	emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chr...	40	8.4
46	emb|AL390206.14| Human DNA sequence from clone RP11-478K7 on chr...	40	8.4
47	emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chr...	40	8.4
48	emb|CR751549.1| Human DNA sequence from clone DASS-94P17 on chro...	40	8.4
49	dbj|AK155317.1| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	8.4
50	gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Ca...	40	8.4
51	gb|AC148696.1| Macaca mulatta Major Histocompatibility Complex B...	40	8.4
52	dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia...	40	8.4
53	gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, com...	40	8.4
54	gb|AC107863.9| Mus musculus chromosome 3, clone RP23-383E14, com...	40	8.4
55	gb|AC167140.1| Mus musculus BAC clone RP24-482O17 from chromosom...	40	8.4
56	dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co...	40	8.4
57	gb|AF116752.1|AF116752 Glycine max seed maturation protein PM23 ...	40	8.4
58	emb|AL662932.10| Mouse DNA sequence from clone RP23-15B7 on chro...	40	8.4
59	emb|AL672081.6| Mouse DNA sequence from clone RP23-319D17 on chr...	40	8.4

---

>ref|XM_466605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2494

 Score =  482 bits (243), Expect = e-133
 Identities = 338/367 (92%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                        
Query: 244  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 303
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2398 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2339

                                                                        
Query: 304  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 363
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2338 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2279

                                                                        
Query: 364  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 423
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2278 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2219

                                                                        
Query: 424  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 483
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2218 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2159

                                                                        
Query: 484  ctaatctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagag 543
            |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 2158 ctaatctgagcactgacttcttggaggtcaaagagtgtccgcccacaagaaggacaagag 2099

                                                                        
Query: 544  acatattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtat 603
            |||||||| | |||||||||||||||||| ||| ||||||| | |||||||||||||| |
Sbjct: 2098 acatattccg-tttttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgt 2041

                   
Query: 604  ccctcaa 610
            |||||||
Sbjct: 2040 ccctcaa 2034

---

>ref|XM_506856.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1669_F01.30 mRNA
          Length = 2675

 Score =  482 bits (243), Expect = e-133
 Identities = 338/367 (92%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                        
Query: 244  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 303
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2391 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2332

                                                                        
Query: 304  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 363
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2331 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2272

                                                                        
Query: 364  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 423
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2271 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2212

                                                                        
Query: 424  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 483
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2211 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2152

                                                                        
Query: 484  ctaatctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagag 543
            |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 2151 ctaatctgagcactgacttcttggaggtcaaagagtgtccgcccacaagaaggacaagag 2092

                                                                        
Query: 544  acatattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtat 603
            |||||||| | |||||||||||||||||| ||| ||||||| | |||||||||||||| |
Sbjct: 2091 acatattccg-tttttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgt 2034

                   
Query: 604  ccctcaa 610
            |||||||
Sbjct: 2033 ccctcaa 2027

---

>dbj|AK120769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D09, full
            insert sequence
          Length = 2675

 Score =  482 bits (243), Expect = e-133
 Identities = 338/367 (92%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                        
Query: 244  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 303
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2391 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2332

                                                                        
Query: 304  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 363
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2331 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2272

                                                                        
Query: 364  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 423
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2271 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2212

                                                                        
Query: 424  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 483
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2211 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2152

                                                                        
Query: 484  ctaatctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagag 543
            |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 2151 ctaatctgagcactgacttcttggaggtcaaagagtgtccgcccacaagaaggacaagag 2092

                                                                        
Query: 544  acatattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtat 603
            |||||||| | |||||||||||||||||| ||| ||||||| | |||||||||||||| |
Sbjct: 2091 acatattccg-tttttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgt 2034

                   
Query: 604  ccctcaa 610
            |||||||
Sbjct: 2033 ccctcaa 2027

---

>dbj|AK105762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D08, full
            insert sequence
          Length = 2494

 Score =  482 bits (243), Expect = e-133
 Identities = 338/367 (92%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                        
Query: 244  gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 303
            |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2398 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 2339

                                                                        
Query: 304  gcttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaagg 363
            || |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 2338 gcgtcagtggccccctccattgcaatgccccgttgcacgacggtcttgccaacataaagg 2279

                                                                        
Query: 364  tcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggc 423
            |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 2278 tcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggccatctcccctggc 2219

                                                                        
Query: 424  ccattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctct 483
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 2218 ccattgacaatgcaacccatgatagcaatagagacgcctggcagatgagaggtcttctct 2159

                                                                        
Query: 484  ctaatctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagag 543
            |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 2158 ctaatctgagcactgacttcttggaggtcaaagagtgtccgcccacaagaaggacaagag 2099

                                                                        
Query: 544  acatattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtat 603
            |||||||| | |||||||||||||||||| ||| ||||||| | |||||||||||||| |
Sbjct: 2098 acatattccg-tttttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgt 2041

                   
Query: 604  ccctcaa 610
            |||||||
Sbjct: 2040 ccctcaa 2034

---

>gb|AY224457.1| Oryza sativa (japonica cultivar-group) isolate 23493 isoprenoid
            biosynthesis-like protein mRNA, partial cds
          Length = 1827

 Score =  478 bits (241), Expect = e-131
 Identities = 327/353 (92%), Gaps = 2/353 (0%)
 Strand = Plus / Minus

                                                                        
Query: 258  aggaggatccacccaacggccatggtccttgattagctgaatcaaggcttcagtggcacc 317
            ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 1815 aggaggatccacccaacggccatggtccttgattaactgaatcaaggcgtcagtggcccc 1756

                                                                        
Query: 318  ctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcgatctttccagg 377
            |||||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 1755 ctccattgcaatgccccgttgcacgacggtcttgccaacataaaggtcgatcttcccagg 1696

                                                                        
Query: 378  agcacctccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgca 437
            |||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct: 1695 agcacctccaacgtatccgaaatcagcatcggccatctcccctggcccattgacaatgca 1636

                                                                        
Query: 438  acccataatagcaatagagacgccaggcagatgagaggtcttctctctaatctgagcact 497
            |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1635 acccatgatagcaatagagacgcctggcagatgagaggtcttctctctaatctgagcact 1576

                                                                        
Query: 498  gatttcttggaggtcgaagagcgttcgcccacaagaaggacaagagacatattcagtttt 557
            || |||||||||||| ||||| || ||||||||||||||||||||||||||||| | |||
Sbjct: 1575 gacttcttggaggtcaaagagtgtccgcccacaagaaggacaagagacatattccg-ttt 1517

                                                                 
Query: 558  ttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtatccctcaa 610
            ||||||||||||||| ||| ||||||| | |||||||||||||| ||||||||
Sbjct: 1516 ttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgtccctcaa 1465

---

>gb|AY562489.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) mRNA,
            complete cds
          Length = 2631

 Score =  335 bits (169), Expect = 1e-88
 Identities = 318/365 (87%), Gaps = 2/365 (0%)
 Strand = Plus / Minus

                                                                        
Query: 245  cctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaagg 304
            |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 2443 cctactcctcggcaggaggatccacccatcggccatggtccttgatcagctggatcaagg 2384

                                                                        
Query: 305  cttcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaaggt 364
            | ||||||||||| ||||| || ||  | || |||||||| ||||| || || |||||||
Sbjct: 2383 cgtcagtggcaccttccatggcgatggcgcgctgcacaacggtcttgccgacgtaaaggt 2324

                                                                        
Query: 365  cgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggcc 424
            |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 2323 cgatctttccgggagcgcctccaacgtacccaaaatcggcatcagccatctctcctggtc 2264

                                                                        
Query: 425  cattaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctctc 484
            |||| ||||| || ||||| ||||| || ||||| || ||||||||||||||||| ||||
Sbjct: 2263 cattgacaatacagcccatgatagcgatcgagacacctggcagatgagaggtcttttctc 2204

                                                                        
Query: 485  taatctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagaga 544
            |||||| ||| |||||||| || ||||| ||||| ||||| || || ||||||||||| |
Sbjct: 2203 taatctcagcgctgatttcctgaaggtcaaagagtgttcggccgcaggaaggacaagaca 2144

                                                                        
Query: 545  catattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtatc 604
            ||||||||| |||||| ||||||||||| |||||| || ||| |||||||| ||||| ||
Sbjct: 2143 catattcag-tttttgcgttgcgcatcctgcaaccttggagc-aagttgaaagatgtgtc 2086

                 
Query: 605  cctca 609
            |||||
Sbjct: 2085 cctca 2081

---

>gb|BT014629.1| Lycopersicon esculentum clone 134132R, mRNA sequence
          Length = 2527

 Score =  168 bits (85), Expect = 1e-38
 Identities = 291/357 (81%), Gaps = 2/357 (0%)
 Strand = Plus / Minus

                                                                        
Query: 247  tactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaaggct 306
            |||||||||||||||||||| ||||| ||| |||| || ||||||||||| ||||  || 
Sbjct: 2271 tactcctcggtaggaggatcaacccagcggtcatgatctttgattagctggatcagtgca 2212

                                                                        
Query: 307  tcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcg 366
            || || |||  ||||||| ||||  | |||| ||| || ||||| || || |||||||| 
Sbjct: 2211 tccgttgcatgctccatttcaatagcgcgtttcaccactgtcttgccgacgtaaaggtca 2152

                                                                        
Query: 367  atctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggccca 426
            ||||||||||||||||| ||||| |||||||| || |||||||||||||| || || |||
Sbjct: 2151 atctttccaggagcaccaccaacatatccaaagtcagcatcagccatctccccaggtcca 2092

                                                                        
Query: 427  ttaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctctcta 486
            || |||||||||||||| || ||||| || || |||||||  || || ||||||||||||
Sbjct: 2091 ttcacaatgcaacccatgatggcaattgaaacaccaggcaagtgtgacgtcttctctcta 2032

                                                                        
Query: 487  atctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagagaca 546
            || ||||| || || ||||| || ||||| |  ||||  ||||| || || || || |||
Sbjct: 2031 atttgagcgcttatctcttgaagatcgaataaagttctgccacaggatgggcatgataca 1972

                                                                     
Query: 547  tattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtat 603
            ||||| | |||||||||| ||||| | |||||| || |||||| ||||| |||||||
Sbjct: 1971 tattccg-tttttgtgttccgcattctgcaaccttgaagcaaa-ttgaaagatgtat 1917

---

>gb|AF435086.1| Lycopersicon esculentum GcpE mRNA, complete cds
          Length = 2373

 Score =  168 bits (85), Expect = 1e-38
 Identities = 291/357 (81%), Gaps = 2/357 (0%)
 Strand = Plus / Minus

                                                                        
Query: 247  tactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaaggct 306
            |||||||||||||||||||| ||||| ||| |||| || ||||||||||| ||||  || 
Sbjct: 2293 tactcctcggtaggaggatcaacccagcggtcatgatctttgattagctggatcagtgca 2234

                                                                        
Query: 307  tcagtggcaccctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcg 366
            || || |||  ||||||| ||||  | |||| ||| || ||||| || || |||||||| 
Sbjct: 2233 tccgttgcatgctccatttcaatagcgcgtttcaccactgtcttgccgacgtaaaggtca 2174

                                                                        
Query: 367  atctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcctggccca 426
            ||||||||||||||||| ||||| |||||||| || |||||||||||||| || || |||
Sbjct: 2173 atctttccaggagcaccaccaacatatccaaagtcagcatcagccatctccccaggtcca 2114

                                                                        
Query: 427  ttaacaatgcaacccataatagcaatagagacgccaggcagatgagaggtcttctctcta 486
            || |||||||||||||| || ||||| || || |||||||  || || ||||||||||||
Sbjct: 2113 ttcacaatgcaacccatgatggcaattgaaacaccaggcaagtgtgacgtcttctctcta 2054

                                                                        
Query: 487  atctgagcactgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagagaca 546
            || ||||| || || ||||| || ||||| |  ||||  ||||| || || || || |||
Sbjct: 2053 atttgagcgcttatctcttgaagatcgaataaagttctgccacaggatgggcatgataca 1994

                                                                     
Query: 547  tattcagttttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtat 603
            ||||| | |||||||||| ||||| | |||||| || |||||| ||||| |||||||
Sbjct: 1993 tattccg-tttttgtgttccgcattctgcaaccttgaagcaaa-ttgaaagatgtat 1939

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  157 bits (79), Expect = 5e-35
 Identities = 94/99 (94%)
 Strand = Plus / Plus

                                                                            
Query: 453      agagacgccaggcagatgagaggtcttctctctaatctgagcactgatttcttggaggtc 512
                ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 23673510 agagacgcctggcagatgagaggtcttctctctaatctgagcactgacttcttggaggtc 23673569

                                                       
Query: 513      gaagagcgttcgcccacaagaaggacaagagacatattc 551
                 ||||| || |||||||||||||||||||||||||||||
Sbjct: 23673570 aaagagtgtccgcccacaagaaggacaagagacatattc 23673608



 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Plus

                                                                            
Query: 352      ccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagcc 411
                |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 23673319 ccaacataaaggtcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggcc 23673378

                                                         
Query: 412      atctctcctggcccattaacaatgcaacccataatagcaat 452
                ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 23673379 atctcccctggcccattgacaatgcaacccatgatagcaat 23673419



 Score =  139 bits (70), Expect = 1e-29
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                            
Query: 244      gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 303
                |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 23672982 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 23673041

                                                      
Query: 304      gcttcagtggcaccctccattgcaattccccgttgcac 341
                || |||||||| |||||||||||||| |||||||||||
Sbjct: 23673042 gcgtcagtggccccctccattgcaatgccccgttgcac 23673079



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                        
Query: 555      tttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtatccctcaa 610
                |||||||||||||||||| ||| ||||||| | |||||||||||||| ||||||||
Sbjct: 23673822 tttttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgtccctcaa 23673876

---

>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score =  157 bits (79), Expect = 5e-35
 Identities = 94/99 (94%)
 Strand = Plus / Plus

                                                                          
Query: 453    agagacgccaggcagatgagaggtcttctctctaatctgagcactgatttcttggaggtc 512
              ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114610 agagacgcctggcagatgagaggtcttctctctaatctgagcactgacttcttggaggtc 114669

                                                     
Query: 513    gaagagcgttcgcccacaagaaggacaagagacatattc 551
               ||||| || |||||||||||||||||||||||||||||
Sbjct: 114670 aaagagtgtccgcccacaagaaggacaagagacatattc 114708



 Score =  145 bits (73), Expect = 2e-31
 Identities = 94/101 (93%)
 Strand = Plus / Plus

                                                                          
Query: 352    ccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagcc 411
              |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 114419 ccaacataaaggtcgatcttcccaggagcacctccaacgtatccgaaatcagcatcggcc 114478

                                                       
Query: 412    atctctcctggcccattaacaatgcaacccataatagcaat 452
              ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 114479 atctcccctggcccattgacaatgcaacccatgatagcaat 114519



 Score =  139 bits (70), Expect = 1e-29
 Identities = 91/98 (92%)
 Strand = Plus / Plus

                                                                          
Query: 244    gcctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaag 303
              |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 114082 gcctactcctcaacaggaggatccacccaacggccatggtccttgattaactgaatcaag 114141

                                                    
Query: 304    gcttcagtggcaccctccattgcaattccccgttgcac 341
              || |||||||| |||||||||||||| |||||||||||
Sbjct: 114142 gcgtcagtggccccctccattgcaatgccccgttgcac 114179



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                      
Query: 555    tttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtatccctcaa 610
              |||||||||||||||||| ||| ||||||| | |||||||||||||| ||||||||
Sbjct: 114922 tttttgtgttgcgcatcctgcagccctgtaac-aagttgaaggatgtgtccctcaa 114976

---

>gb|AY184810.1| Catharanthus roseus GCPE protein mRNA, complete cds
          Length = 2223

 Score =  141 bits (71), Expect = 3e-30
 Identities = 209/255 (81%)
 Strand = Plus / Minus

                                                                        
Query: 258  aggaggatccacccaacggccatggtccttgattagctgaatcaaggcttcagtggcacc 317
            ||||||||| ||||| || ||||| || || |||||||||||||  || || || |||  
Sbjct: 2211 aggaggatcaacccagcgcccatgatctttaattagctgaatcagtgcatctgttgcatg 2152

                                                                        
Query: 318  ctccattgcaattccccgttgcacaacagtcttcccaacataaaggtcgatctttccagg 377
            ||||||  ||||||| |||| ||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 2151 ctccatatcaattcctcgtttcaccaccgtctttccaacgtaaagatcaatctttccagg 2092

                                                                        
Query: 378  agcacctccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgca 437
            |||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||
Sbjct: 2091 agcaccaccaacataaccaaaatctgcatcagccatttctcccggtccattcacaatgca 2032

                                                                        
Query: 438  acccataatagcaatagagacgccaggcagatgagaggtcttctctctaatctgagcact 497
             ||||| || || || || || ||||||| ||| || ||||| |||||||| || |||||
Sbjct: 2031 tcccatgattgcgatcgaaacaccaggcaaatgtgatgtcttttctctaatttgtgcact 1972

                           
Query: 498  gatttcttggaggtc 512
             |||||||| |||||
Sbjct: 1971 tatttcttgaaggtc 1957

---

>gb|AY562488.1| Zea mays hydroxymethylbutenyl 4-diphosphate synthase (Hds1) gene,
            complete cds
          Length = 6353

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                        
Query: 358  taaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctct 417
            ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 5770 taaaggtcgatctttccgggagcgcctccaacgtacccaaaatcggcatcagccatctct 5711

                                            
Query: 418  cctggcccattaacaatgcaacccataatagc 449
            ||||| ||||| ||||| || ||||| |||||
Sbjct: 5710 cctggtccattgacaatacagcccatgatagc 5679



 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                        
Query: 245  cctactcctcggtaggaggatccacccaacggccatggtccttgattagctgaatcaagg 304
            |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct: 6192 cctactcctcggcaggaggatccacccatcggccatggtccttgatcagctggatcaagg 6133

                               
Query: 305  cttcagtggcaccctccat 323
            | ||||||||||| |||||
Sbjct: 6132 cgtcagtggcaccttccat 6114



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 454  gagacgccaggcagatgagaggtcttctctctaatctgagcactgatttcttggaggtcg 513
            ||||| || ||||||||||||||||| |||||||||| ||| |||||||| || ||||| 
Sbjct: 5534 gagacacctggcagatgagaggtcttttctctaatctcagcgctgatttcctgaaggtca 5475

                                                  
Query: 514  aagagcgttcgcccacaagaaggacaagagacatattc 551
            ||||| ||||| || || ||||||||||| ||||||||
Sbjct: 5474 aagagtgttcggccgcaggaaggacaagacacatattc 5437



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 48/55 (87%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 555  tttttgtgttgcgcatccggcaaccctgtagcaaagttgaaggatgtatccctca 609
            |||||| ||||||||||| |||||| || ||| |||||||| ||||| |||||||
Sbjct: 5225 tttttgcgttgcgcatcctgcaaccttggagc-aagttgaaagatgtgtccctca 5172

---

>gb|AY497303.1| Nicotiana benthamiana (E)-4-hydroxy-3-methylbut-2-enyl diphosphate
           synthase mRNA, partial cds
          Length = 804

 Score =  101 bits (51), Expect = 3e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                       
Query: 356 cataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatct 415
           |||||||||| ||||| ||||||||||| ||||| |||||||| || |||||||||||||
Sbjct: 793 cataaaggtcaatcttcccaggagcaccaccaacatatccaaagtcagcatcagccatct 734

                                                                       
Query: 416 ctcctggcccattaacaatgcaacccataatagcaatagagacgccaggcagatgagagg 475
           | || || ||||| |||||||||||||| || ||||| || || || ||||  || || |
Sbjct: 733 ccccaggtccattcacaatgcaacccatgatggcaattgaaacaccgggcaagtgtgacg 674

                                          
Query: 476 tcttctctctaatctgagcactgatttcttg 506
           ||||||| || || |||||||| || |||||
Sbjct: 673 tcttctcccttatttgagcacttatctcttg 643

---

>ref|NM_125453.4| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENESIS 4);
            4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
            AT5G60600 (CLB4) transcript variant AT5G60600.2 mRNA,
            complete cds
          Length = 2598

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 167/206 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2318 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2259

                                                                        
Query: 406  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 465
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2258 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2199

                                                                        
Query: 466  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaagagcgttcgc 525
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||| |||||||  
Sbjct: 2198 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaaagcgttctt 2139

                                      
Query: 526  ccacaagaaggacaagagacatattc 551
            |||||||| || || || ||||||||
Sbjct: 2138 ccacaagacgggcacgatacatattc 2113

---

>ref|NM_180902.2| Arabidopsis thaliana CLB4 (CHLOROPLAST BIOGENESIS 4);
            4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
            AT5G60600 (CLB4) transcript variant AT5G60600.1 mRNA,
            complete cds
          Length = 2601

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 167/206 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2321 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2262

                                                                        
Query: 406  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 465
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2261 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2202

                                                                        
Query: 466  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaagagcgttcgc 525
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||| |||||||  
Sbjct: 2201 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaaagcgttctt 2142

                                      
Query: 526  ccacaagaaggacaagagacatattc 551
            |||||||| || || || ||||||||
Sbjct: 2141 ccacaagacgggcacgatacatattc 2116

---

>gb|AF434673.1| Arabidopsis thaliana GcpE mRNA, complete cds; nuclear gene for
            chloroplast product
          Length = 2520

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 167/206 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2273 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2214

                                                                        
Query: 406  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 465
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2213 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2154

                                                                        
Query: 466  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaagagcgttcgc 525
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||| |||||||  
Sbjct: 2153 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaaagcgttctt 2094

                                      
Query: 526  ccacaagaaggacaagagacatattc 551
            |||||||| || || || ||||||||
Sbjct: 2093 ccacaagacgggcacgatacatattc 2068

---

>gb|BT010473.1| Arabidopsis thaliana At5g60600 gene, complete cds
          Length = 2226

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 167/206 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2123 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2064

                                                                        
Query: 406  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 465
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2063 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2004

                                                                        
Query: 466  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaagagcgttcgc 525
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||| |||||||  
Sbjct: 2003 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaaagcgttctt 1944

                                      
Query: 526  ccacaagaaggacaagagacatattc 551
            |||||||| || || || ||||||||
Sbjct: 1943 ccacaagacgggcacgatacatattc 1918

---

>gb|AY094472.1| Arabidopsis thaliana AT5g60600/mup24_10 mRNA, complete cds
          Length = 2413

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 167/206 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2172 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2113

                                                                        
Query: 406  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 465
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2112 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2053

                                                                        
Query: 466  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaagagcgttcgc 525
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||| |||||||  
Sbjct: 2052 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaaagcgttctt 1993

                                      
Query: 526  ccacaagaaggacaagagacatattc 551
            |||||||| || || || ||||||||
Sbjct: 1992 ccacaagacgggcacgatacatattc 1967

---

>gb|AY081261.1| Arabidopsis thaliana GcpE protein (At5g60600) mRNA, complete cds
          Length = 2533

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 167/206 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
            ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 2279 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 2220

                                                                        
Query: 406  tcagccatctctcctggcccattaacaatgcaacccataatagcaatagagacgccaggc 465
            || ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| 
Sbjct: 2219 tctgccatttctcctggtccattcacaatgcatcccatgattgcgatcgaaacgccaggt 2160

                                                                        
Query: 466  agatgagaggtcttctctctaatctgagcactgatttcttggaggtcgaagagcgttcgc 525
            | ||| || ||||| ||||  ||||  || ||||||||||| | |||||| |||||||  
Sbjct: 2159 aaatgggaagtcttttctcggatctcggcgctgatttcttgcaagtcgaaaagcgttctt 2100

                                      
Query: 526  ccacaagaaggacaagagacatattc 551
            |||||||| || || || ||||||||
Sbjct: 2099 ccacaagacgggcacgatacatattc 2074

---

>emb|BX833711.1|CNS09Z1Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL72ZB10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 496

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 346 gtcttcccaacataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggca 405
           ||||| || |||||||||||||| ||||| |||| ||| || || ||||| ||||| |||
Sbjct: 259 gtctttccgacataaaggtcgatttttccgggagaaccacctacatatccgaaatcagca 200

                                                 
Query: 406 tcagccatctctcctggcccattaacaatgcaacccat 443
           || ||||| |||||||| ||||| |||||||| |||||
Sbjct: 199 tctgccatttctcctggtccattcacaatgcatcccat 162

---

>dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUP24
          Length = 77999

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 355  acataaaggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatc 414
            |||||||||||||| ||||| |||| ||| || || ||||| ||||| ||||| ||||| 
Sbjct: 6266 acataaaggtcgatttttccgggagaaccacctacatatccgaaatcagcatctgccatt 6207

                                         
Query: 415  tctcctggcccattaacaatgcaacccat 443
            |||||||| ||||| |||||||| |||||
Sbjct: 6206 tctcctggtccattcacaatgcatcccat 6178



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 496  ctgatttcttggaggtcgaagagcgttcgcccacaagaaggacaagagacatattc 551
            ||||||||||| | |||||| |||||||  |||||||| || || || ||||||||
Sbjct: 6040 ctgatttcttgcaagtcgaaaagcgttcttccacaagacgggcacgatacatattc 5985

---

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 385    ccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccata 444
              ||||| || |||||||||||||||||||| || ||||| || || |||||||||||||||
Sbjct: 398301 ccaacataaccaaaatcggcatcagccatttcacctggaccgttgacaatgcaacccata 398242

                
Query: 445    at 446
              ||
Sbjct: 398241 at 398240

---

>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                
Query: 403    gcatcagccatctctcctggcccattaacaatgcaacccataatagcaat 452
              |||||||||||||| ||||| ||||| |||||||||||||||| ||||||
Sbjct: 552065 gcatcagccatctcgcctgggccattgacaatgcaacccataacagcaat 552114

---

>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                 
Query: 403     gcatcagccatctctcctggcccattaacaatgcaacccataatagcaat 452
               |||||||||||||||||||| ||||| |||||||||||||| | ||||||
Sbjct: 3001471 gcatcagccatctctcctgggccattgacaatgcaacccatgacagcaat 3001520

---

>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                          
Query: 384    tccaacgtatccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccat 443
              ||||||||| |||||||| ||||| ||||| || || ||||| ||||||||||| |||||
Sbjct: 913805 tccaacgtacccaaaatctgcatcggccatttcccccggcccgttaacaatgcatcccat 913746

                       
Query: 444    aatagcaat 452
              ||| |||||
Sbjct: 913745 aatcgcaat 913737

---

>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 398    aatcggcatcagccatctctcctggcccattaacaatgcaacccataatagcaata 453
              |||| ||||| ||||||||||| || |||||||||||||||||||| | |||||||
Sbjct: 114527 aatcagcatctgccatctctccaggaccattaacaatgcaacccattacagcaata 114472

---

>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 394    ccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccataa 445
              |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 469300 ccaaaatcagcatctgccatttctcctggaccattaacaatacatcccataa 469351

---

>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 388   acgtatccaaaatcggcatcagccatctctcctggcccatt 428
             ||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 66323 acgtagccaaaatcggcgtcagccatttctcctgggccatt 66363



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 508   aggtcgaagagcgttcgcccacaagaaggacaagagacatattc 551
             |||||||| |||||||| |||||   ||| ||||||||||||||
Sbjct: 66446 aggtcgaaaagcgttcggccacatccagggcaagagacatattc 66489

---

>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7
          Length = 349823

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 403    gcatcagccatctctcctggcccattaacaatgcaacccat 443
              ||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 153305 gcatctgccatctcacctggaccattcacaatgcaacccat 153345

---

>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 388   acgtatccaaaatcggcatcagccatctctcctggcccatt 428
             ||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 65598 acgtagccaaaatcggcgtcagccatttctcctgggccatt 65638



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 508   aggtcgaagagcgttcgcccacaagaaggacaagagacatattc 551
             |||||||| |||||||| |||||   ||| ||||||||||||||
Sbjct: 65721 aggtcgaaaagcgttcggccacatccagggcaagagacatattc 65764

---

>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                   
Query: 391    tatccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccat 443
              |||||| |||| ||||| |||||||| || || ||||||||||| ||||||||
Sbjct: 932539 tatccataatctgcatctgccatctcaccagggccattaacaatacaacccat 932591

---

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 400    tcggcatcagccatctctcctggcccattaacaatgcaacccat 443
              ||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 134983 tcggcgtcggccatctctcccggcccattgacaatgcagcccat 134940

---

>gb|AY860817.1| Chlamydomonas reinhardtii putative chloroplast
            1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase
            precursor (HDS) mRNA, complete cds; nuclear gene for
            chloroplast product
          Length = 2868

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                        
Query: 361  aggtcgatctttccaggagcacctccaacgtatccaaaatcggcatcagccatctctcct 420
            ||||||||||| || || || || || ||||| || || ||||| ||||||||||| |||
Sbjct: 1934 aggtcgatcttgccgggggcgccgcccacgtacccgaagtcggcgtcagccatctcgcct 1875

                                   
Query: 421  ggcccattaacaatgcaacccat 443
            ||||| || || ||||| |||||
Sbjct: 1874 ggcccgttgacgatgcagcccat 1852

---

>ref|NM_001026389.1| Caenorhabditis elegans PaTched Related family member (ptr-12)
            (ptr-12) mRNA, complete cds
          Length = 2242

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 155  atatgtgctgggatgtccactg 176
            ||||||||||||||||||||||
Sbjct: 1947 atatgtgctgggatgtccactg 1926

---

>ref|NM_001026388.1| Caenorhabditis elegans PaTched Related family member (ptr-12)
            (ptr-12) mRNA, complete cds
          Length = 3032

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 155  atatgtgctgggatgtccactg 176
            ||||||||||||||||||||||
Sbjct: 2582 atatgtgctgggatgtccactg 2561

---

>gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete sequence
          Length = 36454

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 155   atatgtgctgggatgtccactg 176
             ||||||||||||||||||||||
Sbjct: 12796 atatgtgctgggatgtccactg 12817

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 392    atccaaaatcggcatcagccatctctcctggcccattaacaatgcaacccataa 445
              |||| ||||| | ||||||||| ||||| || ||||||||||| || |||||||
Sbjct: 475756 atccgaaatcagaatcagccatttctccagggccattaacaatacatcccataa 475809

---

>gb|U14530.1|OVU14530 Onchocerca volvulus Ovl3-1 mRNA, partial cds
          Length = 1477

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 278  catggtccttgattagctgaatcaa 302
            |||||| ||||||||||||||||||
Sbjct: 1235 catggtacttgattagctgaatcaa 1211

---

>gb|AY508697.1| Bovine enterovirus type 2 strain 3A, complete genome
          Length = 7450

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  ccacaagaaggacaagagac 545
            ||||||||||||||||||||
Sbjct: 6064 ccacaagaaggacaagagac 6083

---

>gb|AC113540.12| Mus musculus chromosome 17, clone RP23-158F13, complete sequence
          Length = 219781

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   agccatctctcctggcccat 427
             ||||||||||||||||||||
Sbjct: 46963 agccatctctcctggcccat 46944

---

>gb|AC123678.19| Mus musculus chromosome 3, clone RP23-276A22, complete sequence
          Length = 198615

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   tctattttatttcccaactg 147
             ||||||||||||||||||||
Sbjct: 83113 tctattttatttcccaactg 83094

---

>emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 in linkage group 8,
              complete sequence
          Length = 175313

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 129    ctattttatttcccaactgatatacaatatgtgctg 164
              ||||||||||| ||||| | |||||| |||||||||
Sbjct: 108574 ctattttattttccaacagttatacattatgtgctg 108539

---

>gb|AC125044.3| Mus musculus BAC clone RP23-348B10 from chromosome 17, complete
             sequence
          Length = 222615

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   agccatctctcctggcccat 427
             ||||||||||||||||||||
Sbjct: 51303 agccatctctcctggcccat 51322

---

>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    gacattatttctattttatt 138
              ||||||||||||||||||||
Sbjct: 120723 gacattatttctattttatt 120742

---

>emb|AL450104.14| Human DNA sequence from clone RP11-93N17 on chromosome 1 Contains the
             5' end of a novel gene (KIAA1078) and the 3' end of
             ribosomal protein L34 pseudogene 1 (RPL34P1) and a CpG
             island, complete sequence
          Length = 154879

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   cattatttctattttatttcccaa 144
             ||||||| ||||||||||||||||
Sbjct: 43723 cattattgctattttatttcccaa 43746

---

>emb|AL390206.14| Human DNA sequence from clone RP11-478K7 on chromosome 10 Contains a
             small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
             (SNRPD2) pseudogene and a novel gene (FLJ35900), complete
             sequence
          Length = 113039

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   caagaaggacaagagacata 548
             ||||||||||||||||||||
Sbjct: 72941 caagaaggacaagagacata 72922

---

>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the
              5' end of a novel gene, three novel genes, the Slc6a4 gene
              for solute carrier family 6 (neurotransmitter transporter,
              serotonin) member 4, the Blmh gene for bleomycin hydrolase
              and three CpG islands, complete sequence
          Length = 229289

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    agccatctctcctggcccat 427
              ||||||||||||||||||||
Sbjct: 213352 agccatctctcctggcccat 213333

---

>emb|CR751549.1| Human DNA sequence from clone DASS-94P17 on chromosome 6, complete
            sequence
          Length = 6654

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 583  tagcaaagttgaaggatgta 602
            ||||||||||||||||||||
Sbjct: 2032 tagcaaagttgaaggatgta 2051

---

>dbj|AK155317.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630218O03
            product:unclassifiable, full insert sequence
          Length = 1914

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 408  agccatctctcctggcccat 427
            ||||||||||||||||||||
Sbjct: 1622 agccatctctcctggcccat 1603

---

>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163912

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   acattatttctattttattt 139
             ||||||||||||||||||||
Sbjct: 39771 acattatttctattttattt 39752

---

>gb|AC148696.1| Macaca mulatta Major Histocompatibility Complex BAC MMU246K06, complete
             sequence
          Length = 165811

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 583   tagcaaagttgaaggatgta 602
             ||||||||||||||||||||
Sbjct: 44981 tagcaaagttgaaggatgta 45000

---

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 583     tagcaaagttgaaggatgta 602
               ||||||||||||||||||||
Sbjct: 1986855 tagcaaagttgaaggatgta 1986836

---

>gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   gacattatttctattttatt 138
             ||||||||||||||||||||
Sbjct: 10190 gacattatttctattttatt 10209

---

>gb|AC107863.9| Mus musculus chromosome 3, clone RP23-383E14, complete sequence
          Length = 194268

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  tctattttatttcccaactg 147
            ||||||||||||||||||||
Sbjct: 7377 tctattttatttcccaactg 7358

---

>gb|AC167140.1| Mus musculus BAC clone RP24-482O17 from chromosome 14, complete
             sequence
          Length = 143541

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   acattatttctattttattt 139
             ||||||||||||||||||||
Sbjct: 80609 acattatttctattttattt 80590

---

>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 583     tagcaaagttgaaggatgta 602
               ||||||||||||||||||||
Sbjct: 1068285 tagcaaagttgaaggatgta 1068266

---

>gb|AF116752.1|AF116752 Glycine max seed maturation protein PM23 (PM23) mRNA, partial cds
          Length = 1633

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 490 tgagcactgatttcttggag 509
           ||||||||||||||||||||
Sbjct: 271 tgagcactgatttcttggag 252

---

>emb|AL662932.10| Mouse DNA sequence from clone RP23-15B7 on chromosome X, complete
              sequence
          Length = 218740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ttatttctattttatttccc 142
              ||||||||||||||||||||
Sbjct: 203278 ttatttctattttatttccc 203259

---

>emb|AL672081.6| Mouse DNA sequence from clone RP23-319D17 on chromosome X, complete
              sequence
          Length = 194141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 539    aagagacatattcagttttttgtg 562
              |||||| |||||||||||||||||
Sbjct: 102561 aagagaaatattcagttttttgtg 102538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,355,836
Number of Sequences: 3902068
Number of extensions: 5355836
Number of successful extensions: 110677
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110360
Number of HSP's gapped (non-prelim): 301
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---