ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TOP1_ARATH (P30181) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi... 33 0.87
2MOES_HUMAN (P26038) Moesin (Membrane-organizing extension spike ... 30 5.7
3RS16_PROMA (Q7VAU5) 30S ribosomal protein S16 30 7.4
4DHYS_RAT (Q6AY53) Deoxyhypusine synthase (EC 2.5.1.46) (DHS) 30 7.4
5RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase rad... 29 9.7
6AXN2_HUMAN (Q9Y2T1) Axin-2 (Axis inhibition protein 2) (Conducti... 29 9.7

>TOP1_ARATH (P30181) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 916

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 481 VYKWMLEEKRKSKPRDAAEKNKINEEKALLKE 386
           +Y+W LEEK K K     EK  + EEK   +E
Sbjct: 455 IYEWHLEEKEKKKQMSTEEKKALKEEKMKQEE 486



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>MOES_HUMAN (P26038) Moesin (Membrane-organizing extension spike protein)|
          Length = 576

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 499 EDEQRQVYKWMLEEKRKSKPRDAAEKNKINEEKALLKEIIR 377
           E  Q+Q+ + MLE ++K +     EK KI  EK  L E ++
Sbjct: 311 EKHQKQMERAMLENEKKKREMAEKEKEKIEREKEELMERLK 351



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>RS16_PROMA (Q7VAU5) 30S ribosomal protein S16|
          Length = 131

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -3

Query: 463 EEKRKSKPRDAAEKNKINEEKALLKEIIRAESL 365
           EE RKS+ + +A+  K NEEKA  +++  +E+L
Sbjct: 93  EELRKSEAKTSAKNKKANEEKANEEKVEESETL 125



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>DHYS_RAT (Q6AY53) Deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 369

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 305 AIPVRVYFITNLVF-LAVTNSMALRADTFHSQKN 207
           A PV+VY   +LVF L V  + A +AD F ++KN
Sbjct: 334 AQPVKVYADASLVFPLLVAETFAQKADAFRAEKN 367



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>RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase radical fringe|
           (EC 2.4.1.222) (O-fucosylpeptide
           3-beta-N-acetylglucosaminyltransferase)
          Length = 372

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 296 VRVYFITNLVFLAVTNSMALRADTFHSQKN*VTPVSRKRFPFRCTI-MMMESILEI 132
           V+ +F T      ++  +AL+   + S  N ++   R R P  CTI  ++E +LE+
Sbjct: 241 VKFWFATGGAGFCISRGLALKMSPWASLGNFISTAERVRLPDDCTIGYIIEGLLEV 296



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>AXN2_HUMAN (Q9Y2T1) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like|
           protein) (Axil)
          Length = 843

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 496 DEQRQVYKWMLEEKRKSKPR 437
           D  + V++WMLE +R+SKP+
Sbjct: 614 DRSQDVWQWMLESERQSKPK 633


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,857,099
Number of Sequences: 219361
Number of extensions: 1389735
Number of successful extensions: 3716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3714
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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