Clone Information

BLAST Search Result

Clone Name	rbags37a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_474323.1\| Oryza sativa (japonica cultivar-group), predic...	256	8e-65
2	dbj\|AK119773.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	256	8e-65
3	dbj\|AK059048.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	256	8e-65
4	emb\|AL606457.3\|OSJN00002 Oryza sativa genomic DNA, chromosome 4,...	165	2e-37
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	165	2e-37
6	emb\|AL732344.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	165	2e-37
7	ref\|XM_417811.1\| PREDICTED: Gallus gallus similar to syncoilin (...	44	0.59
8	emb\|AL162741.44\| Human DNA sequence from clone RP5-902P8 on chro...	44	0.59
9	gb\|AC140195.3\| Mus musculus BAC clone RP24-64A19 from 6, complet...	44	0.59
10	emb\|AL096805.1\|CNS00YVB Homo sapiens genomic region containing h...	44	0.59
11	gb\|AC159189.2\| Mus musculus BAC clone RP24-159L17 from chromosom...	44	0.59
12	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	42	2.3
13	gb\|AC147020.2\| Mus musculus BAC clone RP23-267A11 from chromosom...	42	2.3
14	gb\|AC125398.4\| Mus musculus BAC clone RP24-217G23 from chromosom...	42	2.3
15	ref\|XM_799735.1\| Trypanosoma cruzi strain CL Brener potassium vo...	42	2.3
16	gb\|AC087397.10\| Homo sapiens chromosome 18, clone RP11-594P16, c...	42	2.3
17	gb\|AC084197.1\| Caenorhabditis elegans cosmid Y73B6BL, complete s...	42	2.3
18	gb\|AC018972.6\| Homo sapiens chromosome 18, clone RP11-756M1, com...	42	2.3
19	emb\|BX950866.15\| Zebrafish DNA sequence from clone DKEY-3J24 in ...	42	2.3
20	emb\|AL824716.8\| Mouse DNA sequence from clone RP23-277F20 on chr...	42	2.3
21	gb\|AC009394.5\| Drosophila melanogaster clone BACR03J17, complete...	40	9.3
22	gb\|AC009462.7\| Drosophila melanogaster clone BACR27G04, complete...	40	9.3
23	ref\|XM_601322.2\| PREDICTED: Bos taurus similar to Rho GTPase act...	40	9.3
24	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	9.3
25	ref\|XM_385784.1\| Gibberella zeae PH-1 chromosome 3 hypothetical ...	40	9.3
26	gb\|AC122266.2\| Mus musculus BAC clone RP23-213K18 from 8, comple...	40	9.3
27	gb\|AC022008.4\| Homo sapiens chromosome 3 clone RP11-63O1 map 3p,...	40	9.3
28	gb\|AC118033.7\| Mus musculus chromosome 14, clone RP23-472J4, com...	40	9.3
29	emb\|CR695603.2\|CNS0FZOF Tetraodon nigroviridis full-length cDNA	40	9.3
30	emb\|CR692453.2\|CNS0FX8X Tetraodon nigroviridis full-length cDNA	40	9.3
31	emb\|CR689268.2\|CNS0FUSG Tetraodon nigroviridis full-length cDNA	40	9.3
32	emb\|CR684860.2\|CNS0FRE0 Tetraodon nigroviridis full-length cDNA	40	9.3
33	gb\|AC142329.1\| Pan troglodytes BAC clone RP43-25D8 from 11, comp...	40	9.3
34	gb\|AC158362.5\| Mus musculus BAC clone RP23-214K5 from chromosome...	40	9.3
35	ref\|XM_788291.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.3
36	emb\|AL080239.12\|HSG256O22 Human DNA sequence from clone GS1-256O...	40	9.3
37	ref\|XM_787536.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.3
38	emb\|CR550302.15\| Zebrafish DNA sequence from clone DKEY-145I3 in...	40	9.3
39	gb\|AC131152.3\| Homo sapiens 3 BAC RP11-162E24 (Roswell Park Canc...	40	9.3
40	gb\|AC090436.37\| Chlamydomonas reinhardtii clone cr-3h1, complete...	40	9.3
41	gb\|AC090434.43\| Chlamydomonas reinhardtii clone cr-1j6, complete...	40	9.3
42	ref\|NM_169799.1\| Drosophila melanogaster 14-3-3 CG31196-RC, tran...	40	9.3
43	ref\|NM_169798.1\| Drosophila melanogaster 14-3-3 CG31196-RD, tran...	40	9.3
44	ref\|NM_169797.1\| Drosophila melanogaster 14-3-3 CG31196-RB, tran...	40	9.3
45	ref\|NM_169796.1\| Drosophila melanogaster 14-3-3 CG31196-RA, tran...	40	9.3
46	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.3
47	emb\|AJ609490.1\| Rigidoporus microporus mRNA for laccase (lcc1 gene)	40	9.3
48	gb\|AC135205.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.3
49	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
50	gb\|AC130404.8\| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Can...	40	9.3
51	emb\|BX571822.6\| Zebrafish DNA sequence from clone DKEY-5M24 in l...	40	9.3
52	emb\|AL954320.5\| Zebrafish DNA sequence from clone CH211-220G18 i...	40	9.3
53	dbj\|BS000092.1\| Pan troglodytes chromosome 22 clone:RP43-125I01,...	40	9.3
54	emb\|Z72503.1\|CEC26C6 Caenorhabditis elegans Cosmid C26C6, comple...	40	9.3
55	gb\|AE003721.3\| Drosophila melanogaster chromosome 3R, section 59...	40	9.3
56	gb\|AC105905.10\| Mus musculus chromosome 7, clone RP24-79I18, com...	40	9.3
57	emb\|BX511243.3\| Mouse DNA sequence from clone RP23-62N18 on chro...	40	9.3
58	gb\|U84898.1\|DMU84898 Drosophila melanogaster 14-3-3 epsilon isof...	40	9.3
59	gb\|U84897.1\|DMU84897 Drosophila melanogaster 14-3-3 epsilon isof...	40	9.3
60	emb\|AL844843.4\| Mouse DNA sequence from clone RP23-376P3 on chro...	40	9.3
61	gb\|AC155239.2\| Mus musculus BAC clone RP24-462F23 from chromosom...	40	9.3

>ref|XM_474323.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1701

 Score =  256 bits (129), Expect = 8e-65
 Identities = 262/301 (87%), Gaps = 4/301 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  tgcacggcgatcctcggcgggatcaggtctgttcctcgccaggtccttgcacgcctcgag 424
            ||||||||||||| ||||||||||    | |||| | |||||||||||||||||||| ||
Sbjct: 1364 tgcacggcgatccccggcgggatcctc-cggttcttggccaggtccttgcacgcctccag 1306

                                                                        
Query: 425  ggtcagcttctcgtagttgaggcatcggcatagtgtcgcgcgctcctcgacggtcagc-t 483
             ||||||||||||||||||||||| |||||||| ||||  |||||||||| ||||||| |
Sbjct: 1305 cgtcagcttctcgtagttgaggcaccggcatagcgtcgtccgctcctcgatggtcagcgt 1246

                                                                        
Query: 484  cggcatgagactcgaggtagatgtccagtgctctgtacacgcccgtcgtagcagtccctg 543
            |||  |||||||| |||||||| |||| ||| ||||||||||| ||||||||| ||||  
Sbjct: 1245 cggg-tgagactcaaggtagatatccaatgccctgtacacgcc-gtcgtagcattcccga 1188

                                                                        
Query: 544  gcggagtccggcaggctctcggcgacggcgaggaaccgggacacccgcagcccctggtcc 603
            || |||||||||||||||||||||||||||||||||  |||||||| ||| || ||||||
Sbjct: 1187 gccgagtccggcaggctctcggcgacggcgaggaacttggacaccctcaggccatggtcc 1128

                                                                        
Query: 604  ggcgagatctccgccaggtacttgtccaccagcctccccgccttcctcatcctctgcgac 663
            |||||||||||  | ||||||||||| |||||||| ||  ||||||||||||||||||||
Sbjct: 1127 ggcgagatctcaccgaggtacttgtcgaccagccttccaaccttcctcatcctctgcgac 1068

             
Query: 664  g 664
            |
Sbjct: 1067 g 1067

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>dbj|AK119773.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F05, full
            insert sequence
          Length = 1898

 Score =  256 bits (129), Expect = 8e-65
 Identities = 262/301 (87%), Gaps = 4/301 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  tgcacggcgatcctcggcgggatcaggtctgttcctcgccaggtccttgcacgcctcgag 424
            ||||||||||||| ||||||||||    | |||| | |||||||||||||||||||| ||
Sbjct: 1405 tgcacggcgatccccggcgggatcctc-cggttcttggccaggtccttgcacgcctccag 1347

                                                                        
Query: 425  ggtcagcttctcgtagttgaggcatcggcatagtgtcgcgcgctcctcgacggtcagc-t 483
             ||||||||||||||||||||||| |||||||| ||||  |||||||||| ||||||| |
Sbjct: 1346 cgtcagcttctcgtagttgaggcaccggcatagcgtcgtccgctcctcgatggtcagcgt 1287

                                                                        
Query: 484  cggcatgagactcgaggtagatgtccagtgctctgtacacgcccgtcgtagcagtccctg 543
            |||  |||||||| |||||||| |||| ||| ||||||||||| ||||||||| ||||  
Sbjct: 1286 cggg-tgagactcaaggtagatatccaatgccctgtacacgcc-gtcgtagcattcccga 1229

                                                                        
Query: 544  gcggagtccggcaggctctcggcgacggcgaggaaccgggacacccgcagcccctggtcc 603
            || |||||||||||||||||||||||||||||||||  |||||||| ||| || ||||||
Sbjct: 1228 gccgagtccggcaggctctcggcgacggcgaggaacttggacaccctcaggccatggtcc 1169

                                                                        
Query: 604  ggcgagatctccgccaggtacttgtccaccagcctccccgccttcctcatcctctgcgac 663
            |||||||||||  | ||||||||||| |||||||| ||  ||||||||||||||||||||
Sbjct: 1168 ggcgagatctcaccgaggtacttgtcgaccagccttccaaccttcctcatcctctgcgac 1109

             
Query: 664  g 664
            |
Sbjct: 1108 g 1108

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>dbj|AK059048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D12, full
           insert sequence
          Length = 1174

 Score =  256 bits (129), Expect = 8e-65
 Identities = 262/301 (87%), Gaps = 4/301 (1%)
 Strand = Plus / Minus

                                                                       
Query: 365 tgcacggcgatcctcggcgggatcaggtctgttcctcgccaggtccttgcacgcctcgag 424
           ||||||||||||| ||||||||||    | |||| | |||||||||||||||||||| ||
Sbjct: 693 tgcacggcgatccccggcgggatcctc-cggttcttggccaggtccttgcacgcctccag 635

                                                                       
Query: 425 ggtcagcttctcgtagttgaggcatcggcatagtgtcgcgcgctcctcgacggtcagc-t 483
            ||||||||||||||||||||||| |||||||| ||||  |||||||||| ||||||| |
Sbjct: 634 cgtcagcttctcgtagttgaggcaccggcatagcgtcgtccgctcctcgatggtcagcgt 575

                                                                       
Query: 484 cggcatgagactcgaggtagatgtccagtgctctgtacacgcccgtcgtagcagtccctg 543
           |||  |||||||| |||||||| |||| ||| ||||||||||| ||||||||| ||||  
Sbjct: 574 cggg-tgagactcaaggtagatatccaatgccctgtacacgcc-gtcgtagcattcccga 517

                                                                       
Query: 544 gcggagtccggcaggctctcggcgacggcgaggaaccgggacacccgcagcccctggtcc 603
           || |||||||||||||||||||||||||||||||||  |||||||| ||| || ||||||
Sbjct: 516 gccgagtccggcaggctctcggcgacggcgaggaacttggacaccctcaggccatggtcc 457

                                                                       
Query: 604 ggcgagatctccgccaggtacttgtccaccagcctccccgccttcctcatcctctgcgac 663
           |||||||||||  | ||||||||||| |||||||| ||  ||||||||||||||||||||
Sbjct: 456 ggcgagatctcaccgaggtacttgtcgaccagccttccaaccttcctcatcctctgcgac 397

            
Query: 664 g 664
           |
Sbjct: 396 g 396

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>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
             complete sequence
          Length = 164943

 Score =  165 bits (83), Expect = 2e-37
 Identities = 147/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                         
Query: 498   aggtagatgtccagtgctctgtacacgcccgtcgtagcagtccctggcggagtccggcag 557
             |||||||| |||| ||| ||||||||||| ||||||||| ||||  || |||||||||||
Sbjct: 71566 aggtagatatccaatgccctgtacacgcc-gtcgtagcattcccgagccgagtccggcag 71624

                                                                         
Query: 558   gctctcggcgacggcgaggaaccgggacacccgcagcccctggtccggcgagatctccgc 617
             ||||||||||||||||||||||  |||||||| ||| || |||||||||||||||||  |
Sbjct: 71625 gctctcggcgacggcgaggaacttggacaccctcaggccatggtccggcgagatctcacc 71684

                                                            
Query: 618   caggtacttgtccaccagcctccccgccttcctcatcctctgcgacg 664
              ||||||||||| |||||||| ||  |||||||||||||||||||||
Sbjct: 71685 gaggtacttgtcgaccagccttccaaccttcctcatcctctgcgacg 71731



 Score =  107 bits (54), Expect = 5e-20
 Identities = 103/118 (87%), Gaps = 1/118 (0%)
 Strand = Plus / Plus

                                                                         
Query: 365   tgcacggcgatcctcggcgggatcaggtctgttcctcgccaggtccttgcacgcctcgag 424
             ||||||||||||| ||||||||||    | |||| | |||||||||||||||||||| ||
Sbjct: 69233 tgcacggcgatccccggcgggatcctc-cggttcttggccaggtccttgcacgcctccag 69291

                                                                       
Query: 425   ggtcagcttctcgtagttgaggcatcggcatagtgtcgcgcgctcctcgacggtcagc 482
              ||||||||||||||||||||||| |||||||| ||||  |||||||||| |||||||
Sbjct: 69292 cgtcagcttctcgtagttgaggcaccggcatagcgtcgtccgctcctcgatggtcagc 69349

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  165 bits (83), Expect = 2e-37
 Identities = 147/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                            
Query: 498      aggtagatgtccagtgctctgtacacgcccgtcgtagcagtccctggcggagtccggcag 557
                |||||||| |||| ||| ||||||||||| ||||||||| ||||  || |||||||||||
Sbjct: 34454081 aggtagatatccaatgccctgtacacgcc-gtcgtagcattcccgagccgagtccggcag 34454139

                                                                            
Query: 558      gctctcggcgacggcgaggaaccgggacacccgcagcccctggtccggcgagatctccgc 617
                ||||||||||||||||||||||  |||||||| ||| || |||||||||||||||||  |
Sbjct: 34454140 gctctcggcgacggcgaggaacttggacaccctcaggccatggtccggcgagatctcacc 34454199

                                                               
Query: 618      caggtacttgtccaccagcctccccgccttcctcatcctctgcgacg 664
                 ||||||||||| |||||||| ||  |||||||||||||||||||||
Sbjct: 34454200 gaggtacttgtcgaccagccttccaaccttcctcatcctctgcgacg 34454246



 Score =  107 bits (54), Expect = 5e-20
 Identities = 103/118 (87%), Gaps = 1/118 (0%)
 Strand = Plus / Plus

                                                                            
Query: 365      tgcacggcgatcctcggcgggatcaggtctgttcctcgccaggtccttgcacgcctcgag 424
                ||||||||||||| ||||||||||    | |||| | |||||||||||||||||||| ||
Sbjct: 34451748 tgcacggcgatccccggcgggatcctc-cggttcttggccaggtccttgcacgcctccag 34451806

                                                                          
Query: 425      ggtcagcttctcgtagttgaggcatcggcatagtgtcgcgcgctcctcgacggtcagc 482
                 ||||||||||||||||||||||| |||||||| ||||  |||||||||| |||||||
Sbjct: 34451807 cgtcagcttctcgtagttgaggcaccggcatagcgtcgtccgctcctcgatggtcagc 34451864

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>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
             sequence
          Length = 138387

 Score =  165 bits (83), Expect = 2e-37
 Identities = 147/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                         
Query: 498   aggtagatgtccagtgctctgtacacgcccgtcgtagcagtccctggcggagtccggcag 557
             |||||||| |||| ||| ||||||||||| ||||||||| ||||  || |||||||||||
Sbjct: 75399 aggtagatatccaatgccctgtacacgcc-gtcgtagcattcccgagccgagtccggcag 75457

                                                                         
Query: 558   gctctcggcgacggcgaggaaccgggacacccgcagcccctggtccggcgagatctccgc 617
             ||||||||||||||||||||||  |||||||| ||| || |||||||||||||||||  |
Sbjct: 75458 gctctcggcgacggcgaggaacttggacaccctcaggccatggtccggcgagatctcacc 75517

                                                            
Query: 618   caggtacttgtccaccagcctccccgccttcctcatcctctgcgacg 664
              ||||||||||| |||||||| ||  |||||||||||||||||||||
Sbjct: 75518 gaggtacttgtcgaccagccttccaaccttcctcatcctctgcgacg 75564



 Score =  107 bits (54), Expect = 5e-20
 Identities = 103/118 (87%), Gaps = 1/118 (0%)
 Strand = Plus / Plus

                                                                         
Query: 365   tgcacggcgatcctcggcgggatcaggtctgttcctcgccaggtccttgcacgcctcgag 424
             ||||||||||||| ||||||||||    | |||| | |||||||||||||||||||| ||
Sbjct: 73046 tgcacggcgatccccggcgggatcctc-cggttcttggccaggtccttgcacgcctccag 73104

                                                                       
Query: 425   ggtcagcttctcgtagttgaggcatcggcatagtgtcgcgcgctcctcgacggtcagc 482
              ||||||||||||||||||||||| |||||||| ||||  |||||||||| |||||||
Sbjct: 73105 cgtcagcttctcgtagttgaggcaccggcatagcgtcgtccgctcctcgatggtcagc 73162

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>ref|XM_417811.1| PREDICTED: Gallus gallus similar to syncoilin (LOC419664), mRNA
          Length = 2187

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 258  gcctcaggacctccttctccttctcg 283
            |||||||| |||||||||||||||||
Sbjct: 1228 gcctcagggcctccttctccttctcg 1203

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>emb|AL162741.44| Human DNA sequence from clone RP5-902P8 on chromosome 1 Contains the 3'
              end of a novel gene, the TNFRSF18 gene for tumor necrosis
              factor receptor superfamily member 18, the TNFRSF4 gene for
              tumor necrosis factor receptor superfamily member 4, the
              gene for calcium binding protein Cab45 precursor (Cab45),
              the B3GALT6 gene for UDP-Gal:betaGal beta
              1,3-galactosyltransferase polypeptide 6, a novel gene, the
              UBE2J2 gene for ubiquitin-conjugating enzyme E2 J2 (UBC6
              homolog, yeast), the SCNN1D gene for sodium channel
              nonvoltage-gated 1 delta, the 3' end of the CENTB5 gene for
              centaurin beta 5 and four CpG islands, complete sequence
          Length = 112159

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 124    ccaaggcaagcccctcccagcc 145
              ||||||||||||||||||||||
Sbjct: 105804 ccaaggcaagcccctcccagcc 105825

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>gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complete sequence
          Length = 156314

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 63    tcaccccacaaaacaaaaatcatgcc 88
             |||||||||||||||||| |||||||
Sbjct: 25106 tcaccccacaaaacaaaactcatgcc 25131

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>emb|AL096805.1|CNS00YVB Homo sapiens genomic region containing hypervariable minisatellites
             chromosome 1[1p36.33] of Homo sapiens
          Length = 34175

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 124   ccaaggcaagcccctcccagcc 145
             ||||||||||||||||||||||
Sbjct: 29135 ccaaggcaagcccctcccagcc 29156

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>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence
          Length = 160884

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 63    tcaccccacaaaacaaaaatcatgcc 88
             |||||||||||||||||| |||||||
Sbjct: 24164 tcaccccacaaaacaaaactcatgcc 24139

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 641     ccgccttcctcatcctctgcg 661
               |||||||||||||||||||||
Sbjct: 3179278 ccgccttcctcatcctctgcg 3179298

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>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete
             sequence
          Length = 204727

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    aggatcaagaggaagaaaagggtca 47
             ||||||||||||||||| |||||||
Sbjct: 52689 aggatcaagaggaagaagagggtca 52665

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>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete
             sequence
          Length = 166948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 23    aggatcaagaggaagaaaagggtca 47
             ||||||||||||||||| |||||||
Sbjct: 10391 aggatcaagaggaagaagagggtca 10415

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>ref|XM_799735.1| Trypanosoma cruzi strain CL Brener potassium voltage-gated channel
           (Tc00.1047053503767.5) partial mRNA
          Length = 354

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 265 gacctccttctccttctcgtc 285
           |||||||||||||||||||||
Sbjct: 234 gacctccttctccttctcgtc 214

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>gb|AC087397.10| Homo sapiens chromosome 18, clone RP11-594P16, complete sequence
          Length = 185912

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      cagcaaaacaactttacaaaa 23
              |||||||||||||||||||||
Sbjct: 125847 cagcaaaacaactttacaaaa 125827

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>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence
          Length = 216143

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    cagcaaaacaactttacaaaa 23
            |||||||||||||||||||||
Sbjct: 4943 cagcaaaacaactttacaaaa 4923

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>gb|AC018972.6| Homo sapiens chromosome 18, clone RP11-756M1, complete sequence
          Length = 160602

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 3   cagcaaaacaactttacaaaa 23
           |||||||||||||||||||||
Sbjct: 613 cagcaaaacaactttacaaaa 593

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>emb|BX950866.15| Zebrafish DNA sequence from clone DKEY-3J24 in linkage group 19,
             complete sequence
          Length = 96656

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     cagcaaaacaactttacaaaa 23
             |||||||||||||||||||||
Sbjct: 73236 cagcaaaacaactttacaaaa 73256

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>emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chromosome 4, complete
             sequence
          Length = 185441

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    ttttcccattatgaaagctac 115
             |||||||||||||||||||||
Sbjct: 16659 ttttcccattatgaaagctac 16639

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>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence
          Length = 199043

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   cgctcctcgacggtcagctc 484
             ||||||||||||||||||||
Sbjct: 66435 cgctcctcgacggtcagctc 66416

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>gb|AC009462.7| Drosophila melanogaster clone BACR27G04, complete sequence
          Length = 151609

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    cgctcctcgacggtcagctc 484
              ||||||||||||||||||||
Sbjct: 146505 cgctcctcgacggtcagctc 146486

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>ref|XM_601322.2| PREDICTED: Bos taurus similar to Rho GTPase activating protein 21
            (LOC523030), partial mRNA
          Length = 2098

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  cacggcgatcctcggcggga 386
            ||||||||||||||||||||
Sbjct: 1909 cacggcgatcctcggcggga 1890

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 68      ccacaaaacaaaaatcatgcccccattt 95
               ||||||||||| | ||||||||||||||
Sbjct: 8750532 ccacaaaacaatactcatgcccccattt 8750505

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>ref|XM_385784.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05608.1)
           partial mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 cctccttctccttctcgtca 286
           ||||||||||||||||||||
Sbjct: 32  cctccttctccttctcgtca 51

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>gb|AC122266.2| Mus musculus BAC clone RP23-213K18 from 8, complete sequence
          Length = 195246

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 627   gtccaccagcctccccgccttcct 650
             |||||||| |||||||||||||||
Sbjct: 64210 gtccaccaccctccccgccttcct 64233

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>gb|AC022008.4| Homo sapiens chromosome 3 clone RP11-63O1 map 3p, complete sequence
          Length = 176051

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    gacaacttcatttgtcctct 198
              ||||||||||||||||||||
Sbjct: 138601 gacaacttcatttgtcctct 138582

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>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence
          Length = 178111

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tttgtcctctcatctctttg 208
              ||||||||||||||||||||
Sbjct: 177523 tttgtcctctcatctctttg 177542

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>emb|CR695603.2|CNS0FZOF Tetraodon nigroviridis full-length cDNA
          Length = 1034

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 65  accccacaaaacaaaaatcatgcc 88
           |||||| |||||||||||||||||
Sbjct: 832 accccaaaaaacaaaaatcatgcc 809

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>emb|CR692453.2|CNS0FX8X Tetraodon nigroviridis full-length cDNA
          Length = 1034

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 65  accccacaaaacaaaaatcatgcc 88
           |||||| |||||||||||||||||
Sbjct: 831 accccaaaaaacaaaaatcatgcc 808

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>emb|CR689268.2|CNS0FUSG Tetraodon nigroviridis full-length cDNA
          Length = 1022

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 65  accccacaaaacaaaaatcatgcc 88
           |||||| |||||||||||||||||
Sbjct: 819 accccaaaaaacaaaaatcatgcc 796

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>emb|CR684860.2|CNS0FRE0 Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 65  accccacaaaacaaaaatcatgcc 88
           |||||| |||||||||||||||||
Sbjct: 794 accccaaaaaacaaaaatcatgcc 771

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>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence
          Length = 188643

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 636    cctccccgccttcctcatcc 655
              ||||||||||||||||||||
Sbjct: 162038 cctccccgccttcctcatcc 162019

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>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence
          Length = 201185

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 627    gtccaccagcctccccgccttcct 650
              |||||||| |||||||||||||||
Sbjct: 185899 gtccaccaccctccccgccttcct 185876

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>ref|XM_788291.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9907-PA
            (LOC588616), mRNA
          Length = 5586

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  tccttctccttctcgtcatc 288
            ||||||||||||||||||||
Sbjct: 4481 tccttctccttctcgtcatc 4500

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>emb|AL080239.12|HSG256O22 Human DNA sequence from clone GS1-256O22 on chromosome Xq26.3-28
             Contains a novel pseudogene, the DKFZp547M2010 gene, a
             heterogeneous nuclear ribonucleoprotein H pseudogene, a
             novel gene and a CpG island, complete sequence
          Length = 216215

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tcaagaggaagaaaagggtc 46
             ||||||||||||||||||||
Sbjct: 69361 tcaagaggaagaaaagggtc 69380

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>ref|XM_787536.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Retrovirus-related Pol polyprotein from transposon 297
            (LOC587827), mRNA
          Length = 2904

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 647  tcctcatcctctgcgacgac 666
            ||||||||||||||||||||
Sbjct: 1430 tcctcatcctctgcgacgac 1411

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>emb|CR550302.15| Zebrafish DNA sequence from clone DKEY-145I3 in linkage group 11,
             complete sequence
          Length = 202610

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     cagcaaaacaactttacaaa 22
             ||||||||||||||||||||
Sbjct: 80359 cagcaaaacaactttacaaa 80340

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>gb|AC131152.3| Homo sapiens 3 BAC RP11-162E24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 49714

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    cattttttcccattatgaaa 110
             ||||||||||||||||||||
Sbjct: 40795 cattttttcccattatgaaa 40776

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>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence
          Length = 102653

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 616   gccaggtacttgtccaccag 635
             ||||||||||||||||||||
Sbjct: 13948 gccaggtacttgtccaccag 13929

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>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence
          Length = 127686

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 616   gccaggtacttgtccaccag 635
             ||||||||||||||||||||
Sbjct: 98576 gccaggtacttgtccaccag 98557

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>ref|NM_169799.1| Drosophila melanogaster 14-3-3 CG31196-RC, transcript variant C
           (14-3-3epsilon), mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 cgctcctcgacggtcagctc 484
           ||||||||||||||||||||
Sbjct: 440 cgctcctcgacggtcagctc 421

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>ref|NM_169798.1| Drosophila melanogaster 14-3-3 CG31196-RD, transcript variant D
           (14-3-3epsilon), mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 cgctcctcgacggtcagctc 484
           ||||||||||||||||||||
Sbjct: 440 cgctcctcgacggtcagctc 421

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>ref|NM_169797.1| Drosophila melanogaster 14-3-3 CG31196-RB, transcript variant B
           (14-3-3epsilon), mRNA
          Length = 1479

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 cgctcctcgacggtcagctc 484
           ||||||||||||||||||||
Sbjct: 440 cgctcctcgacggtcagctc 421

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>ref|NM_169796.1| Drosophila melanogaster 14-3-3 CG31196-RA, transcript variant A
           (14-3-3epsilon), mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 cgctcctcgacggtcagctc 484
           ||||||||||||||||||||
Sbjct: 440 cgctcctcgacggtcagctc 421

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 555     caggctctcggcgacggcgaggaa 578
               |||||||||| |||||||||||||
Sbjct: 2341910 caggctctcgtcgacggcgaggaa 2341887

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>emb|AJ609490.1| Rigidoporus microporus mRNA for laccase (lcc1 gene)
          Length = 1899

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 652  atcctctgcgacgacgacggcgag 675
            ||||||||||| ||||||||||||
Sbjct: 1518 atcctctgcgaagacgacggcgag 1495

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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 68    ccacaaaacaaaaatcatgcccccattt 95
             ||||||||||| | ||||||||||||||
Sbjct: 94183 ccacaaaacaatactcatgcccccattt 94156

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 68      ccacaaaacaaaaatcatgcccccattt 95
               ||||||||||| | ||||||||||||||
Sbjct: 8748367 ccacaaaacaatactcatgcccccattt 8748340

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>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 135653

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gcttcggtgtgggcgatgac 319
             ||||||||||||||||||||
Sbjct: 27001 gcttcggtgtgggcgatgac 26982

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>emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in linkage group 25,
             complete sequence
          Length = 163788

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   taggttcagcctcaggacct 269
             ||||||||||||||||||||
Sbjct: 74786 taggttcagcctcaggacct 74805

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>emb|AL954320.5| Zebrafish DNA sequence from clone CH211-220G18 in linkage group 25,
              complete sequence
          Length = 215130

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    taggttcagcctcaggacct 269
              ||||||||||||||||||||
Sbjct: 211336 taggttcagcctcaggacct 211355

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>dbj|BS000092.1| Pan troglodytes chromosome 22 clone:RP43-125I01, map 22, complete
             sequences
          Length = 155948

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    ccattttttcccattatgaa 109
             ||||||||||||||||||||
Sbjct: 45154 ccattttttcccattatgaa 45173

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>emb|Z72503.1|CEC26C6 Caenorhabditis elegans Cosmid C26C6, complete sequence
          Length = 42472

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 657   ctgcgacgacgacggcgagc 676
             ||||||||||||||||||||
Sbjct: 25014 ctgcgacgacgacggcgagc 24995

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>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the
             complete sequence
          Length = 224889

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   cgctcctcgacggtcagctc 484
             ||||||||||||||||||||
Sbjct: 86929 cgctcctcgacggtcagctc 86910

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>gb|AC105905.10| Mus musculus chromosome 7, clone RP24-79I18, complete sequence
          Length = 215285

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    cattttttcccattatgaaa 110
             ||||||||||||||||||||
Sbjct: 46965 cattttttcccattatgaaa 46984

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>emb|BX511243.3| Mouse DNA sequence from clone RP23-62N18 on chromosome 2, complete
            sequence
          Length = 58979

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 124  ccaaggcaagcccctcccagccaa 147
            |||||||| |||||||||||||||
Sbjct: 3459 ccaaggcaggcccctcccagccaa 3436

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>gb|U84898.1|DMU84898 Drosophila melanogaster 14-3-3 epsilon isoform gene, complete cds
          Length = 7396

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 465  cgctcctcgacggtcagctc 484
            ||||||||||||||||||||
Sbjct: 5594 cgctcctcgacggtcagctc 5575

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>gb|U84897.1|DMU84897 Drosophila melanogaster 14-3-3 epsilon isoform mRNA, complete cds
          Length = 1453

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 cgctcctcgacggtcagctc 484
           ||||||||||||||||||||
Sbjct: 217 cgctcctcgacggtcagctc 198

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>emb|AL844843.4| Mouse DNA sequence from clone RP23-376P3 on chromosome X, complete
             sequence
          Length = 193470

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    cccattttttcccattatga 108
             ||||||||||||||||||||
Sbjct: 18660 cccattttttcccattatga 18679

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>gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosome 14, complete
             sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tttgtcctctcatctctttg 208
             ||||||||||||||||||||
Sbjct: 14961 tttgtcctctcatctctttg 14980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,563,844
Number of Sequences: 3902068
Number of extensions: 6563844
Number of successful extensions: 204782
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 204170
Number of HSP's gapped (non-prelim): 603
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result