ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCF44_GUITH (O78437) Hypothetical 47.8 kDa protein ycf44 76 9e-14
2YCF44_PORPU (P51363) Hypothetical 50.2 kDa protein ycf44 (ORF437) 72 2e-12
3YCF44_ODOSI (P49539) Hypothetical 43.8 kDa protein ycf44 (ORF382) 32 1.6
4TAF4_YEAST (P50105) Transcription initiation factor TFIID subuni... 30 4.5
5CCPR2_CRYNE (Q5KGE6) Putative heme-binding peroxidase (EC 1.11.1.-) 30 5.9
6SUT21_ARATH (O04722) Sulfate transporter 2.1 (AST68) 30 5.9
7YCF44_CYACA (O19913) Hypothetical 45.3 kDa protein ycf44 30 7.7

>YCF44_GUITH (O78437) Hypothetical 47.8 kDa protein ycf44|
          Length = 414

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 33/83 (39%), Positives = 54/83 (65%)
 Frame = -2

Query: 585 IEINGNEILIEDAIGSTGLDLKTDPGIPIVYAGFGALMLTTCISYLSHAQLWALQDGTTV 406
           I +NG+ I     + STGL  K D  IP+VY GF  LM++T +SY+S++Q+W +++G+T 
Sbjct: 331 ITLNGHTITFNKLVASTGLQFKLDSFIPLVYLGFLLLMISTLLSYISYSQVWLVKNGSTT 390

Query: 405 VVGGKSNRAKIEFSDEMNRLLNK 337
            + G +NRAK  F  ++  + N+
Sbjct: 391 YIFGSTNRAKFAFIKQLTEIANQ 413



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>YCF44_PORPU (P51363) Hypothetical 50.2 kDa protein ycf44 (ORF437)|
          Length = 437

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 31/81 (38%), Positives = 53/81 (65%)
 Frame = -2

Query: 579 INGNEILIEDAIGSTGLDLKTDPGIPIVYAGFGALMLTTCISYLSHAQLWALQDGTTVVV 400
           I+ N I     + STGL +K+DPGIPIVY  F  L+ +  +SY+S++Q+W ++      +
Sbjct: 353 IDNNIIAFLSIVPSTGLQIKSDPGIPIVYTSFFFLITSVSVSYISYSQIWIIEKKHRFYI 412

Query: 399 GGKSNRAKIEFSDEMNRLLNK 337
           GG +NRA++ F +E+ ++ N+
Sbjct: 413 GGVTNRAQLTFEEELLKISNR 433



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>YCF44_ODOSI (P49539) Hypothetical 43.8 kDa protein ycf44 (ORF382)|
          Length = 382

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 564 ILIEDAIGSTGLDLKTDPGIP 502
           I + D + STGL +KTDPGIP
Sbjct: 347 ITLVDILSSTGLQIKTDPGIP 367



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>TAF4_YEAST (P50105) Transcription initiation factor TFIID subunit 4|
           (TBP-associated factor 4) (TBP-associated factor 48 kDa)
           (TAFII-48) (MPT-1) (TAF suppressor gene 2)
          Length = 388

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 114 NKFGLNGEYTAQWAQELSSPNRMQDFLFSKG 206
           +K G     + Q AQ+ S PN+MQD LFS G
Sbjct: 122 SKDGKASNSSGQNAQQQSDPNKMQDVLFSAG 152



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>CCPR2_CRYNE (Q5KGE6) Putative heme-binding peroxidase (EC 1.11.1.-)|
          Length = 315

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -2

Query: 594 KLPIEINGNEILIEDAIGSTGLDLKTDP------GIPIVYAGFGALMLTTCISYLSHAQL 433
           +L    +GN  L+E   GS G  ++  P         + YA    L L +  S++SHA L
Sbjct: 36  RLAWHASGNFSLVEHNGGSNGAGMRFPPESVDPANAGLHYAISFLLPLQSANSWISHADL 95

Query: 432 WALQDGTTVVVGG 394
           W L   T +   G
Sbjct: 96  WTLAGVTAIEAMG 108



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>SUT21_ARATH (O04722) Sulfate transporter 2.1 (AST68)|
          Length = 677

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 552 DAIGSTGLDLKTDPGIPIVYAGFGALMLTTCISYLSHAQLWALQDGTTVVVG 397
           D +G   L L T     I  A FG   L   + +LSHA +     G  +V+G
Sbjct: 192 DPLGYKKLVLTTTFFAGIFQASFGLFRLGFLVDFLSHAAIVGFMGGAAIVIG 243



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>YCF44_CYACA (O19913) Hypothetical 45.3 kDa protein ycf44|
          Length = 396

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 588 PIEINGNEILIEDAIGSTGLDLKTDPGIPIVYAGFGALMLTTCISY 451
           P  I      +   I  TGL +K D  I IVY GF  L++   I++
Sbjct: 344 PQLIRNTYFTVISKISGTGLQIKKDSSINIVYTGFLLLIIGLVINH 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,211,974
Number of Sequences: 219361
Number of extensions: 2005862
Number of successful extensions: 4694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4693
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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