ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36j08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC096707.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.18
2gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, compl... 44 0.18
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.18
4dbj|AK072411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
5emb|CR354598.7| Zebrafish DNA sequence from clone CH211-198K18 i... 40 2.7
6emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, c... 40 2.7
7emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chro... 40 2.7

>gb|AC096707.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1583_A05, complete sequence
          Length = 126987

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 107   cggacgaagaacaagagtgaagcattctcc 136
             ||||||| ||||||||||||||| ||||||
Sbjct: 66041 cggacgatgaacaagagtgaagctttctcc 66070



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>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence
          Length = 199607

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 144    aacattttctcaatgtaggctt 165
              ||||||||||||||||||||||
Sbjct: 155270 aacattttctcaatgtaggctt 155291



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 107      cggacgaagaacaagagtgaagcattctcc 136
                ||||||| ||||||||||||||| ||||||
Sbjct: 13288425 cggacgatgaacaagagtgaagctttctcc 13288454



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>dbj|AK072411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084O03, full
            insert sequence
          Length = 2360

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 107  cggacgaagaacaagagtgaagcattctcc 136
            ||||||| ||||||||||||||| ||||||
Sbjct: 2125 cggacgatgaacaagagtgaagctttctcc 2096



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>emb|CR354598.7| Zebrafish DNA sequence from clone CH211-198K18 in linkage group 6,
              complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    gacgaagaacaagagtgaag 128
              ||||||||||||||||||||
Sbjct: 124281 gacgaagaacaagagtgaag 124262



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>emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, complete sequence
          Length = 209875

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gacgaagaacaagagtgaag 128
              ||||||||||||||||||||
Sbjct: 170120 gacgaagaacaagagtgaag 170139



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>emb|AL731772.9| Mouse DNA sequence from clone RP23-273F8 on chromosome 2, complete
             sequence
          Length = 99258

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tctgtgttcatggtagcttc 81
             ||||||||||||||||||||
Sbjct: 12953 tctgtgttcatggtagcttc 12972


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,934,663
Number of Sequences: 3902068
Number of extensions: 1934663
Number of successful extensions: 131634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131582
Number of HSP's gapped (non-prelim): 52
length of query: 216
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 194
effective length of database: 17,147,199,772
effective search space: 3326556755768
effective search space used: 3326556755768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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