ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T4S1_PONPY (Q5RE43) Transmembrane 4 L6 family member 1 29 3.8
2T4S1_HUMAN (P30408) Transmembrane 4 L6 family member 1 (Tumor-as... 28 8.5

>T4S1_PONPY (Q5RE43) Transmembrane 4 L6 family member 1|
          Length = 202

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 91  LMILGGNI*SYFAKGKKERKKRQNHLFLFTFFFQGSTG 204
           L+ +  NI  YF  G+  R   +NHL  F +FF G  G
Sbjct: 19  LLCIAANILLYFPNGET-RYASENHLSRFVWFFSGIVG 55



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>T4S1_HUMAN (P30408) Transmembrane 4 L6 family member 1 (Tumor-associated|
           antigen L6) (Membrane component surface marker 1) (M3S1)
          Length = 202

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 91  LMILGGNI*SYFAKGKKERKKRQNHLFLFTFFFQGSTG 204
           L+ +  NI  YF  G+ +    +NHL  F +FF G  G
Sbjct: 19  LLCIAANILLYFPNGETKYAS-ENHLSRFVWFFSGIVG 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,317,986
Number of Sequences: 219361
Number of extensions: 451304
Number of successful extensions: 916
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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