ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, com... 42 0.75
2gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
3ref|XM_475305.1| Oryza sativa (japonica cultivar-group), predic... 40 3.0
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
5dbj|AK102760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0

>gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, complete sequence
          Length = 167144

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    tctgcatctgggagaaagaaa 135
              |||||||||||||||||||||
Sbjct: 120723 tctgcatctgggagaaagaaa 120703



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>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05,
             complete sequence
          Length = 109126

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   ctatatgttctgcatctgggagaa 130
             ||||||| ||||||||||||||||
Sbjct: 57712 ctatatgctctgcatctgggagaa 57735



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>ref|XM_475305.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 107  ctatatgttctgcatctgggagaa 130
            ||||||| ||||||||||||||||
Sbjct: 1170 ctatatgctctgcatctgggagaa 1147



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 107      ctatatgttctgcatctgggagaa 130
                ||||||| ||||||||||||||||
Sbjct: 21271106 ctatatgctctgcatctgggagaa 21271129



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>dbj|AK102760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107C19, full
            insert sequence
          Length = 1934

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 107  ctatatgttctgcatctgggagaa 130
            ||||||| ||||||||||||||||
Sbjct: 1610 ctatatgctctgcatctgggagaa 1587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,833,663
Number of Sequences: 3902068
Number of extensions: 2833663
Number of successful extensions: 31673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31655
Number of HSP's gapped (non-prelim): 18
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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