ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2e03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ970536.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101c-B gene) Length = 1881 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 208 ccgccacctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggtatctcccg 267 |||||||||| || ||||||||||| ||||||||||||||||| |||||||| || |||| Sbjct: 512 ccgccacctccacgaggtcgcggccgtacgtcttgagggcctggaagttggtgtcccccg 453 Query: 268 aagcggaatcaatgcgccggttgtcccctccacggagcttctcgacctcatccttcaccc 327 | ||||| || | |||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 452 acgcggactccacgcgccggttgtcgcctccccggagcttctcgacctctgccttcaccc 393 Query: 328 gcgcggc 334 ||||||| Sbjct: 392 gcgcggc 386 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 544 cgacgcgctcgaacgatttgcccgcgtcgtcgctgccgcctgaggcatgggcgatggc 601 |||||||||||||||| | | ||||| ||||| ||||||| || || ||||||||||| Sbjct: 182 cgacgcgctcgaacgactcggccgcggcgtcgttgccgccggacgcgtgggcgatggc 125
>gb|AF174433.1| Triticum aestivum heat shock protein 101 (HSP101c) mRNA, complete cds Length = 3058 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 208 ccgccacctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggtatctcccg 267 |||||||||| || ||||||||||| ||||||||||||||||| |||||||| || |||| Sbjct: 625 ccgccacctccacgaggtcgcggccgtacgtcttgagggcctggaagttggtgtcccccg 566 Query: 268 aagcggaatcaatgcgccggttgtcccctccacggagcttctcgacctcatccttcaccc 327 | ||||| || | |||||||||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 565 acgcggactccacgcgccggttgtcgcctccccggagcttctcgacctcggccttcaccc 506 Query: 328 gcgc 331 |||| Sbjct: 505 gcgc 502 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 544 cgacgcgctcgaacgatttgcccgcgtcgtcgctgccgcctgaggcatgggcgatggc 601 |||||||||||||||| | | ||||| ||||| ||||||| || || ||||||||||| Sbjct: 295 cgacgcgctcgaacgactcggccgcggcgtcgttgccgccggacgcgtgggcgatggc 238
>emb|AJ970535.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101c-A gene) Length = 1881 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 210 gccacctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggtatctcccgaa 269 |||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 510 gccacctccaccaggtcgcggccgtacgtcttgagggcctggaagttggtgtcccccgac 451 Query: 270 gcggaatcaatgcgccggttgtcccctccacggagcttctcgacctcatccttcacccgc 329 || || || | |||||||||||| ||||| ||||||||||| ||||| ||||||||||| Sbjct: 450 gccgactccacgcgccggttgtcgcctccccggagcttctccacctcggccttcacccgc 391 Query: 330 gcggc 334 ||||| Sbjct: 390 gcggc 386 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 544 cgacgcgctcgaacgatttgcccgcgtcgtcgctgccgcctgaggcatgggcgatggc 601 |||||||||||||||| | | ||||| ||||| ||||||| || || ||||||||||| Sbjct: 182 cgacgcgctcgaacgaatcggccgcggcgtcgttgccgccggacgcgtgggcgatggc 125
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 93.7 bits (47), Expect = 6e-16 Identities = 60/63 (95%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 330 gcggctggtccaaacgcccggctcggaccgggaccggaccggcccggaccgtgtccaccc 389 ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 79527 gcggccggtccaaacgtc-ggctcggaccgggaccggaccggcccggaccgtgtccaccc 79469 Query: 390 tga 392 ||| Sbjct: 79468 tga 79466
>gb|U51304.1|TAU51304 Triticum aestivum alpha-gliadin storage protein gene, complete cds Length = 2809 Score = 81.8 bits (41), Expect = 2e-12 Identities = 51/53 (96%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 336 ggtccaaacgcccggctcggaccgggaccggaccggcccggaccgtgtccacc 388 |||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 2522 ggtccaaacgcc-ggctcggaccgggaccggaccggctcggaccgtgtccacc 2573
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 73.8 bits (37), Expect = 6e-10 Identities = 53/57 (92%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 330 gcggctggtccaaacgcccggctcggaccgggaccggaccggcccggaccgtgtcca 386 ||||| |||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct: 3233 gcggccggtccaaacgccag-ctcggaccgggcccggaccggcccggaccgtgtcca 3178
>gb|AF097363.1| Triticum aestivum heat shock protein 101 (Hsp101b) mRNA, complete cds Length = 3107 Score = 71.9 bits (36), Expect = 2e-09 Identities = 109/133 (81%), Gaps = 9/133 (6%) Strand = Plus / Minus Query: 183 atgacggggtcgagcttgcccgcgaccgccacctcgaccaggtcgcggccatacgtcttg 242 ||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||| Sbjct: 665 atgacggggtcgagcttgc------cggccacctcgacgaggtcgcggccgtacgtcttg 612 Query: 243 agggcctgcaagttggtatctcccgaagcggaatcaa---tgcgccggttgtcccctcca 299 || ||||| |||||||| || || || ||||| || | ||||| ||||||||| || Sbjct: 611 agcgcctggaagttggtgtcgccggaggcggactcgaccttgcgcgagttgtccccgccg 552 Query: 300 cggagcttctcga 312 ||||||||||||| Sbjct: 551 cggagcttctcga 539
>emb|AJ970534.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101b-B gene) Length = 1423 Score = 71.9 bits (36), Expect = 2e-09 Identities = 109/133 (81%), Gaps = 9/133 (6%) Strand = Plus / Minus Query: 183 atgacggggtcgagcttgcccgcgaccgccacctcgaccaggtcgcggccatacgtcttg 242 ||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||| Sbjct: 534 atgacggggtcgagcttgc------cggccacctcgacgaggtcgcggccgtacgtcttg 481 Query: 243 agggcctgcaagttggtatctcccgaagcggaatcaa---tgcgccggttgtcccctcca 299 || ||||| |||||||| || || || ||||| || | ||||| ||||||||| || Sbjct: 480 agcgcctggaagttggtgtcgccggaggcggactcgaccttgcgcgcgttgtccccgccg 421 Query: 300 cggagcttctcga 312 ||||||||||||| Sbjct: 420 cggagcttctcga 408
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 363 ccggaccggcccggaccgtgtccaccctgag 393 ||||||||||||||||||||||||||||||| Sbjct: 117044 ccggaccggcccggaccgtgtccaccctgag 117074
>gb|AF083344.2|AF083344 Triticum aestivum heat shock protein 101 kDa (HSP101) mRNA, complete cds Length = 2821 Score = 60.0 bits (30), Expect = 9e-06 Identities = 65/77 (84%), Gaps = 6/77 (7%) Strand = Plus / Minus Query: 183 atgacggggtcgagcttgcccgcgaccgccacctcgaccaggtcgcggccatacgtcttg 242 ||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||| Sbjct: 618 atgacggggtcgagcttgc------cggccacctcgacgaggtcgcggccgtacgtcttg 565 Query: 243 agggcctgcaagttggt 259 || ||||| ||| |||| Sbjct: 564 agcgcctggaaggtggt 548
>emb|AJ970533.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101b-A gene) Length = 1423 Score = 60.0 bits (30), Expect = 9e-06 Identities = 65/77 (84%), Gaps = 6/77 (7%) Strand = Plus / Minus Query: 183 atgacggggtcgagcttgcccgcgaccgccacctcgaccaggtcgcggccatacgtcttg 242 ||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||| Sbjct: 534 atgacggggtcgagcttgc------cggccacctcgacgaggtcgcggccgtacgtcttg 481 Query: 243 agggcctgcaagttggt 259 || ||||| ||| |||| Sbjct: 480 agcgcctggaaggtggt 464
>gb|AY485529.1| Zea mays heat shock protein HSP101 (HSP101) mRNA, complete cds Length = 2861 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggtatctcccgaagcgga 274 |||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 639 ctcgacgaggtcccggccgtatgtcttgagcgcctggaagttggtatcccccgacgcgga 580
>gb|AF077337.2| Zea mays heat shock protein 101 (HSP101) gene, complete cds Length = 3945 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggtatctcccgaagcgga 274 |||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 963 ctcgacgaggtcccggccgtatgtcttgagcgcctggaagttggtatcccccgacgcgga 904
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 122556 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 122600
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 18518 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 18562
>emb|AJ316025.1|OSA316025 Oryza sativa hsp101 gene for heat shock protein 101, exons 1-5 Length = 3109 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 527 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 483
>gb|AF332981.1|AF332981 Oryza sativa heat shock protein (HSP101) mRNA, complete cds Length = 3148 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 659 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 615
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 25606149 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 25606193
>dbj|AK105433.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F05, full insert sequence Length = 3163 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 714 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 670
>dbj|AK100903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M05, full insert sequence Length = 3132 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 215 ctcgaccaggtcgcggccatacgtcttgagggcctgcaagttggt 259 |||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct: 661 ctcgacgaggtcgcggccgtaggtcttgagcgcctggaagttggt 617
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 caatgacggggtcgagcttgcc 202 |||||||||||||||||||||| Sbjct: 2194152 caatgacggggtcgagcttgcc 2194173
>dbj|AB005550.1| Desulfovibrio vulgaris gene for ferredoxin II, phosphopyruvate hydratase, partial and complete cds Length = 3664 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 cggaccgggaccggaccggcccgga 377 ||||||||||| ||||||||||||| Sbjct: 2403 cggaccgggacaggaccggcccgga 2379
>ref|XM_370115.1| Magnaporthe grisea 70-15 hypothetical protein (MG06630.4) partial mRNA Length = 1359 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 cgcgtcgtcgctgccgcctg 585 |||||||||||||||||||| Sbjct: 1059 cgcgtcgtcgctgccgcctg 1078
>ref|XM_960283.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B24P7.60 [imported] - Neurospora crassa OR74A ) (NCU02990.1) partial mRNA Length = 1914 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgacttcatgtccaactcgt 67 |||||||||||||||||||| Sbjct: 1617 tgacttcatgtccaactcgt 1598
>ref|XM_330176.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B24P7.60 [imported] - Neurospora crassa OR74A ) (NCU02990.1) partial mRNA Length = 1914 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgacttcatgtccaactcgt 67 |||||||||||||||||||| Sbjct: 1617 tgacttcatgtccaactcgt 1598
>ref|XM_756227.1| Ustilago maydis 521 hypothetical protein (UM05173.1) partial mRNA Length = 1746 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 catacgtcttgagggcctgc 251 |||||||||||||||||||| Sbjct: 427 catacgtcttgagggcctgc 408
>gb|AC006355.3| Homo sapiens PAC clone RP5-1093G23 from 7, complete sequence Length = 137611 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 actaggttaattactacaat 184 |||||||||||||||||||| Sbjct: 130583 actaggttaattactacaat 130602
>emb|AL590548.22| Human DNA sequence from clone RP11-299N6 on chromosome 20 Contains the TCEA2 gene for transcription elongation factor A (SII) 2, the RGS19 gene for regulator of G-protein signalling 19, the 5' end of the OPRL1 gene for opiate receptor-like 1, a novel gene and five CpG islands, complete sequence Length = 33499 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gtgtccaccctgagccaggt 399 |||||||||||||||||||| Sbjct: 5555 gtgtccaccctgagccaggt 5574
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 203 cgcgaccgccacctcgaccaggtcgcgg 230 ||||| ||||||||||||||| |||||| Sbjct: 482611 cgcgatcgccacctcgaccagatcgcgg 482584
>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain DSM 40236 Length = 90600 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ccgccacctcgaccaggtcg 227 |||||||||||||||||||| Sbjct: 2846 ccgccacctcgaccaggtcg 2827
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tgcccgcgaccgccacctcg 218 |||||||||||||||||||| Sbjct: 290622 tgcccgcgaccgccacctcg 290603
>emb|AL389891.1|NCB7F18 Neurospora crassa DNA linkage group I BAC clone B7F18 Length = 71088 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgacttcatgtccaactcgt 67 |||||||||||||||||||| Sbjct: 60420 tgacttcatgtccaactcgt 60401
>emb|AL389890.1|NCB24P7 Neurospora crassa DNA linkage group I BAC clone B24P7 Length = 77715 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgacttcatgtccaactcgt 67 |||||||||||||||||||| Sbjct: 10965 tgacttcatgtccaactcgt 10946
>gb|AC093275.3| Homo sapiens chromosome 5 clone RP11-379A13, complete sequence Length = 170823 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tcccctccacggagcttctc 310 |||||||||||||||||||| Sbjct: 161933 tcccctccacggagcttctc 161914
>gb|AC113423.2| Homo sapiens chromosome 5 clone RP11-619L12, complete sequence Length = 123754 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tcccctccacggagcttctc 310 |||||||||||||||||||| Sbjct: 115073 tcccctccacggagcttctc 115092
>gb|AF262220.2|AF262220 Streptomyces venezuelae chloramphenicol biosynthetic gene cluster, partial sequence Length = 14159 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ccgccacctcgaccaggtcg 227 |||||||||||||||||||| Sbjct: 2567 ccgccacctcgaccaggtcg 2548
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 atgacggggtcgagcttgcc 202 |||||||||||||||||||| Sbjct: 5514178 atgacggggtcgagcttgcc 5514159 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 cgcccggctcggaccgggaccggaccgg 371 ||||||||||| ||||||||||| |||| Sbjct: 2085557 cgcccggctcgaaccgggaccggcccgg 2085530
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 accgccacctcgaccaggtcgcgg 230 |||||| ||||||||||||||||| Sbjct: 3043484 accgccgcctcgaccaggtcgcgg 3043507
>emb|Z62124.1|HS63G9R H.sapiens CpG island DNA genomic Mse1 fragment, clone 63g9, reverse read cpg63g9.rt1a Length = 323 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 tcccctccacggagcttctc 310 |||||||||||||||||||| Sbjct: 150 tcccctccacggagcttctc 169
>emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chromosome X, complete sequence Length = 252977 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ctcagtatataaagaatacatgac 47 ||||| |||||||||||||||||| Sbjct: 71547 ctcagaatataaagaatacatgac 71570
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 cgccacctcgaccaggtcgcggcc 232 ||||||||||||||||||| |||| Sbjct: 1211222 cgccacctcgaccaggtcgaggcc 1211199 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,070,211 Number of Sequences: 3902068 Number of extensions: 3070211 Number of successful extensions: 73125 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72419 Number of HSP's gapped (non-prelim): 705 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
