| Clone Name | rbags36g15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_127170.1| Arabidopsis thaliana carbohydrate transporter/ sugar porter AT2G16120 mRNA, complete cds Length = 1536 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tagtgttggcaggagccttct 155 ||||||||||||||||||||| Sbjct: 287 tagtgttggcaggagccttct 307
>ref|XM_475970.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 909 Score = 42.1 bits (21), Expect = 0.80 Identities = 69/85 (81%) Strand = Plus / Minus Query: 90 tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149 ||||||| |||||||| || ||||| || | ||||||| ||| |||||| | | ||| Sbjct: 886 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 827 Query: 150 ccttctggatttcacgccctgtagg 174 |||| ||||||||||||||| |||| Sbjct: 826 ccttttggatttcacgccctctagg 802
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 42.1 bits (21), Expect = 0.80 Identities = 69/85 (81%) Strand = Plus / Minus Query: 90 tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149 ||||||| |||||||| || ||||| || | ||||||| ||| |||||| | | ||| Sbjct: 73851 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 73792 Query: 150 ccttctggatttcacgccctgtagg 174 |||| ||||||||||||||| |||| Sbjct: 73791 ccttttggatttcacgccctctagg 73767
>gb|AC007134.10| Arabidopsis thaliana chromosome 2 clone F7H1 map mi398, complete sequence Length = 84544 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 tagtgttggcaggagccttct 155 ||||||||||||||||||||| Sbjct: 45800 tagtgttggcaggagccttct 45780
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.80 Identities = 69/85 (81%) Strand = Plus / Minus Query: 90 tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149 ||||||| |||||||| || ||||| || | ||||||| ||| |||||| | | ||| Sbjct: 28919558 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 28919499 Query: 150 ccttctggatttcacgccctgtagg 174 |||| ||||||||||||||| |||| Sbjct: 28919498 ccttttggatttcacgccctctagg 28919474
>dbj|AK067538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110G24, full insert sequence Length = 1227 Score = 42.1 bits (21), Expect = 0.80 Identities = 69/85 (81%) Strand = Plus / Minus Query: 90 tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149 ||||||| |||||||| || ||||| || | ||||||| ||| |||||| | | ||| Sbjct: 1030 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 971 Query: 150 ccttctggatttcacgccctgtagg 174 |||| ||||||||||||||| |||| Sbjct: 970 ccttttggatttcacgccctctagg 946
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete sequence Length = 230674 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aactgcattttacttagcttg 25 ||||||||||||||||||||| Sbjct: 219739 aactgcattttacttagcttg 219759
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cttcatttacatcaacagag 64 |||||||||||||||||||| Sbjct: 4184367 cttcatttacatcaacagag 4184386
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cttcatttacatcaacagag 64 |||||||||||||||||||| Sbjct: 4184482 cttcatttacatcaacagag 4184501
>gb|BC082729.1| Xenopus tropicalis heterogeneous nuclear ribonucleoprotein D-like, mRNA (cDNA clone MGC:89656 IMAGE:7025989), complete cds Length = 1277 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 acaaacttcatttacatcaa 59 |||||||||||||||||||| Sbjct: 1242 acaaacttcatttacatcaa 1223
>gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, complete sequence Length = 159817 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atacaactgcattttactta 20 |||||||||||||||||||| Sbjct: 99019 atacaactgcattttactta 99000
>emb|AL365187.19| Human DNA sequence from clone RP11-342F23 on chromosome 1 Contains the 5' end of the gene for metalloprotease related protein 1 (MPRP-1) and a CpG island, complete sequence Length = 49963 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gagatacttttcatctttgc 96 |||||||||||||||||||| Sbjct: 12235 gagatacttttcatctttgc 12216
>ref|NM_001011015.1| Xenopus tropicalis heterogeneous nuclear ribonucleoprotein D-like (hnrpdl), mRNA Length = 1277 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 acaaacttcatttacatcaa 59 |||||||||||||||||||| Sbjct: 1242 acaaacttcatttacatcaa 1223
>gb|AC115082.3| Homo sapiens chromosome 11, clone CTD-2386P16, complete sequence Length = 99781 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atacaactgcattttactta 20 |||||||||||||||||||| Sbjct: 86831 atacaactgcattttactta 86850
>emb|AJ697846.1| Uncultured bacterium partial nrfA gene for cytochrome c nitrite reductase Length = 491 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 agatacttttcatctttgcc 97 |||||||||||||||||||| Sbjct: 297 agatacttttcatctttgcc 278
>emb|CR761892.2| Xenopus tropicalis finished cDNA, clone TNeu073n10 Length = 1247 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 acaaacttcatttacatcaa 59 |||||||||||||||||||| Sbjct: 1188 acaaacttcatttacatcaa 1169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,808,143 Number of Sequences: 3902068 Number of extensions: 1808143 Number of successful extensions: 30350 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30313 Number of HSP's gapped (non-prelim): 37 length of query: 246 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 224 effective length of database: 17,147,199,772 effective search space: 3840972748928 effective search space used: 3840972748928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)