ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_127170.1| Arabidopsis thaliana carbohydrate transporter/ ... 42 0.80
2ref|XM_475970.1| Oryza sativa (japonica cultivar-group), predic... 42 0.80
3gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.80
4gb|AC007134.10| Arabidopsis thaliana chromosome 2 clone F7H1 map... 42 0.80
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.80
6dbj|AK067538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.80
7emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chr... 42 0.80
8gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 3.2
9gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 3.2
10gb|BC082729.1| Xenopus tropicalis heterogeneous nuclear ribonucl... 40 3.2
11gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, com... 40 3.2
12emb|AL365187.19| Human DNA sequence from clone RP11-342F23 on ch... 40 3.2
13ref|NM_001011015.1| Xenopus tropicalis heterogeneous nuclear rib... 40 3.2
14gb|AC115082.3| Homo sapiens chromosome 11, clone CTD-2386P16, co... 40 3.2
15emb|AJ697846.1| Uncultured bacterium partial nrfA gene for cytoc... 40 3.2
16emb|CR761892.2| Xenopus tropicalis finished cDNA, clone TNeu073n10 40 3.2

>ref|NM_127170.1| Arabidopsis thaliana carbohydrate transporter/ sugar porter
           AT2G16120 mRNA, complete cds
          Length = 1536

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 tagtgttggcaggagccttct 155
           |||||||||||||||||||||
Sbjct: 287 tagtgttggcaggagccttct 307



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>ref|XM_475970.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 909

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                       
Query: 90  tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149
           ||||||| |||||||| || ||||| || |  ||||||| ||| |||||| |  | ||| 
Sbjct: 886 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 827

                                    
Query: 150 ccttctggatttcacgccctgtagg 174
           |||| ||||||||||||||| ||||
Sbjct: 826 ccttttggatttcacgccctctagg 802



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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                         
Query: 90    tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149
             ||||||| |||||||| || ||||| || |  ||||||| ||| |||||| |  | ||| 
Sbjct: 73851 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 73792

                                      
Query: 150   ccttctggatttcacgccctgtagg 174
             |||| ||||||||||||||| ||||
Sbjct: 73791 ccttttggatttcacgccctctagg 73767



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>gb|AC007134.10| Arabidopsis thaliana chromosome 2 clone F7H1 map mi398, complete
             sequence
          Length = 84544

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   tagtgttggcaggagccttct 155
             |||||||||||||||||||||
Sbjct: 45800 tagtgttggcaggagccttct 45780



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                            
Query: 90       tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149
                ||||||| |||||||| || ||||| || |  ||||||| ||| |||||| |  | ||| 
Sbjct: 28919558 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 28919499

                                         
Query: 150      ccttctggatttcacgccctgtagg 174
                |||| ||||||||||||||| ||||
Sbjct: 28919498 ccttttggatttcacgccctctagg 28919474



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>dbj|AK067538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110G24, full
            insert sequence
          Length = 1227

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                        
Query: 90   tctttgccgacttgtgtttcataaacagagatgctagcacgctcttagtgttggcaggag 149
            ||||||| |||||||| || ||||| || |  ||||||| ||| |||||| |  | ||| 
Sbjct: 1030 tctttgctgacttgtgcttgataaagagggtagctagcatgcttttagtgctaactggaa 971

                                     
Query: 150  ccttctggatttcacgccctgtagg 174
            |||| ||||||||||||||| ||||
Sbjct: 970  ccttttggatttcacgccctctagg 946



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>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete
              sequence
          Length = 230674

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      aactgcattttacttagcttg 25
              |||||||||||||||||||||
Sbjct: 219739 aactgcattttacttagcttg 219759



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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 45      cttcatttacatcaacagag 64
               ||||||||||||||||||||
Sbjct: 4184367 cttcatttacatcaacagag 4184386



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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 45      cttcatttacatcaacagag 64
               ||||||||||||||||||||
Sbjct: 4184482 cttcatttacatcaacagag 4184501



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>gb|BC082729.1| Xenopus tropicalis heterogeneous nuclear ribonucleoprotein D-like,
            mRNA (cDNA clone MGC:89656 IMAGE:7025989), complete cds
          Length = 1277

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   acaaacttcatttacatcaa 59
            ||||||||||||||||||||
Sbjct: 1242 acaaacttcatttacatcaa 1223



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>gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, complete sequence
          Length = 159817

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     atacaactgcattttactta 20
             ||||||||||||||||||||
Sbjct: 99019 atacaactgcattttactta 99000



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>emb|AL365187.19| Human DNA sequence from clone RP11-342F23 on chromosome 1 Contains the
             5' end of the gene for metalloprotease related protein 1
             (MPRP-1) and a CpG island, complete sequence
          Length = 49963

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    gagatacttttcatctttgc 96
             ||||||||||||||||||||
Sbjct: 12235 gagatacttttcatctttgc 12216



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>ref|NM_001011015.1| Xenopus tropicalis heterogeneous nuclear ribonucleoprotein D-like
            (hnrpdl), mRNA
          Length = 1277

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   acaaacttcatttacatcaa 59
            ||||||||||||||||||||
Sbjct: 1242 acaaacttcatttacatcaa 1223



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>gb|AC115082.3| Homo sapiens chromosome 11, clone CTD-2386P16, complete sequence
          Length = 99781

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atacaactgcattttactta 20
             ||||||||||||||||||||
Sbjct: 86831 atacaactgcattttactta 86850



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>emb|AJ697846.1| Uncultured bacterium partial nrfA gene for cytochrome c nitrite
           reductase
          Length = 491

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  agatacttttcatctttgcc 97
           ||||||||||||||||||||
Sbjct: 297 agatacttttcatctttgcc 278



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>emb|CR761892.2| Xenopus tropicalis finished cDNA, clone TNeu073n10
          Length = 1247

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   acaaacttcatttacatcaa 59
            ||||||||||||||||||||
Sbjct: 1188 acaaacttcatttacatcaa 1169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,808,143
Number of Sequences: 3902068
Number of extensions: 1808143
Number of successful extensions: 30350
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30313
Number of HSP's gapped (non-prelim): 37
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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