ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, comple... 42 0.64
2gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, compl... 42 0.64
3gb|AC102488.11| Mus musculus chromosome 1, clone RP24-496O18, co... 42 0.64
4emb|CR854911.13| Zebrafish DNA sequence from clone DKEY-46O18 in... 40 2.5
5emb|AL357793.6| Human DNA sequence from clone RP11-98G13 on chro... 40 2.5
6emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in... 40 2.5

>gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, complete sequence
          Length = 168872

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   gttttctgaaatttgcattca 175
             |||||||||||||||||||||
Sbjct: 83616 gttttctgaaatttgcattca 83636



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>gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, complete sequence
          Length = 173759

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   gttttctgaaatttgcattca 175
             |||||||||||||||||||||
Sbjct: 22923 gttttctgaaatttgcattca 22943



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>gb|AC102488.11| Mus musculus chromosome 1, clone RP24-496O18, complete sequence
          Length = 127076

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 155    gttttctgaaatttgcattca 175
              |||||||||||||||||||||
Sbjct: 102602 gttttctgaaatttgcattca 102582



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>emb|CR854911.13| Zebrafish DNA sequence from clone DKEY-46O18 in linkage group 9,
             complete sequence
          Length = 233574

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    aaatcaaaatgttctgtaaa 93
             ||||||||||||||||||||
Sbjct: 22256 aaatcaaaatgttctgtaaa 22275



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>emb|AL357793.6| Human DNA sequence from clone RP11-98G13 on chromosome 1 Contains a novel
              gene and part of a novel gene, complete sequence
          Length = 145630

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     atcaaaatgttctgtaaacaatac 99
              |||||||||||||| |||||||||
Sbjct: 137732 atcaaaatgttctgaaaacaatac 137709



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>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9,
             complete sequence
          Length = 210830

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aaatcaaaatgttctgtaaa 93
             ||||||||||||||||||||
Sbjct: 41048 aaatcaaaatgttctgtaaa 41029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,645,395
Number of Sequences: 3902068
Number of extensions: 1645395
Number of successful extensions: 138006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137984
Number of HSP's gapped (non-prelim): 22
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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