ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
4gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete... 56 1e-04
5gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds 50 0.006
8ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
9ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative... 46 0.10
10ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predic... 46 0.10
11ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G181... 44 0.40
12gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds 44 0.40
13gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis tha... 44 0.40
14gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana... 44 0.40
15gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LA... 44 0.40
16ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
17ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.6
19ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.6
20emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in... 42 1.6
21dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.6
22gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.6
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
25dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
26dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
27dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
28gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRN... 42 1.6
29gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.6
30gb|AY364319.1| Felis catus chromosome A2 endogenous virus endoge... 40 6.2
31gb|AY364318.1| Felis catus chromosome A1 endogenous virus endoge... 40 6.2
32emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.2
33ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protei... 40 6.2
34emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 40 6.2
35emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 40 6.2
36gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete... 40 6.2
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
38dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
39gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
40emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057... 40 6.2
41gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence 40 6.2
42gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia vir... 40 6.2 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 328    ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
              |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 167463 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 167411



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 405    gctctggaacacgatctccaccg 427
              |||||||||||||||||||||||
Sbjct: 167386 gctctggaacacgatctccaccg 167364
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 328     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8850764 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8850816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 331      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24578395 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24578346



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 405     gctctggaacacgatctccaccg 427
               |||||||||||||||||||||||
Sbjct: 8850841 gctctggaacacgatctccaccg 8850863



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 360      gccatggaggtgcatggggtt 380
                |||||||||||||||||||||
Sbjct: 24569674 gccatggaggtgcatggggtt 24569654
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 328     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8922427 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8922479



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 331      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24890065 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24890016



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 405     gctctggaacacgatctccaccg 427
               |||||||||||||||||||||||
Sbjct: 8922504 gctctggaacacgatctccaccg 8922526



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 328      ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
                ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 24881376 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 24881324
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>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds
          Length = 2048

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 184  aaatgacagtgcaggaaccacacacctggatt 215
            ||||||||||||| ||||||||||||||||||
Sbjct: 1680 aaatgacagtgcatgaaccacacacctggatt 1649
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>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 331   agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
             ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 55297 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 55248



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 328   ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
             ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 46608 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 46556
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>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full
            insert sequence
          Length = 2095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 331  agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 380
            ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 1552 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 1503
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>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds
          Length = 2056

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 334  ccctgcgcgaggacgaacatgtcctggccatggaggtgcat 374
            ||||| ||||||||||| | ||| |||||||||||||||||
Sbjct: 1483 ccctgggcgaggacgaagaagtcgtggccatggaggtgcat 1443
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>ref|XM_467807.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1740

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 181  tcaaaatgacagtgcaggaaccacacacctggatt 215
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1637 tcaaaatggcaatgcatgaaccacacacctggatt 1603
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>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase
            (OSJNBb0040I11.7), mRNA
          Length = 1404

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 181  tcaaaatgacagtgcaggaaccacacacctggatt 215
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1301 tcaaaatggcaatgcatgaaccacacacctggatt 1267
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>ref|NM_193864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1800

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 181  tcaaaatgacagtgcaggaaccacacacctggatt 215
            |||||||| || |||| ||||||||||||||||||
Sbjct: 1697 tcaaaatggcaatgcatgaaccacacacctggatt 1663
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>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 268  ttcctcaccggcggatccaccaggttgtac 297
            |||||| ||||||||||||||| |||||||
Sbjct: 1599 ttcctctccggcggatccaccaagttgtac 1570
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>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 399  caccgggctctggaacacgatctccaccgt 428
            ||||||| |||||| |||||||||||||||
Sbjct: 1410 caccgggttctggagcacgatctccaccgt 1381
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>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81129

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 268   ttcctcaccggcggatccaccaggttgtac 297
             |||||| ||||||||||||||| |||||||
Sbjct: 45254 ttcctctccggcggatccaccaagttgtac 45283
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>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I,
             complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 268   ttcctcaccggcggatccaccaggttgtac 297
             |||||| ||||||||||||||| |||||||
Sbjct: 30558 ttcctctccggcggatccaccaagttgtac 30587
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>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds
          Length = 2030

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 190  cagtgcaggaaccacacacctggatt 215
            ||||||| ||||||||||||||||||
Sbjct: 1714 cagtgcatgaaccacacacctggatt 1689
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>ref|NM_190554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1734

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 184  aaatgacagtgcaggaaccacacacctgg 212
            ||||||||||||| |||||| ||||||||
Sbjct: 1628 aaatgacagtgcatgaaccatacacctgg 1600
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>ref|NM_192960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 261  gacggtgttcctcaccggcggatccaccaggttgtac 297
            ||||||||||||| ||||||| || || |||||||||
Sbjct: 1506 gacggtgttcctctccggcgggtcgacgaggttgtac 1470
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 261     gacggtgttcctcaccggcgg 281
               |||||||||||||||||||||
Sbjct: 1591850 gacggtgttcctcaccggcgg 1591830
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>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1)
            partial mRNA
          Length = 1719

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 187  tgacagtgcaggaaccacacacctggatt 215
            ||||||||||||| ||| |||||||||||
Sbjct: 1550 tgacagtgcaggagccatacacctggatt 1522
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>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
             complete sequence
          Length = 147994

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ctggatttttggtgacaaatc 229
             |||||||||||||||||||||
Sbjct: 74247 ctggatttttggtgacaaatc 74267
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 261     gacggtgttcctcaccggcgg 281
               |||||||||||||||||||||
Sbjct: 1974406 gacggtgttcctcaccggcgg 1974386
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>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306,  section 145 of 469 of the
            complete genome
          Length = 11162

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 261  gacggtgttcctcaccggcgg 281
            |||||||||||||||||||||
Sbjct: 4020 gacggtgttcctcaccggcgg 4000
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 261      gacggtgttcctcaccggcggatccaccaggttgtac 297
                ||||||||||||| ||||||| || || |||||||||
Sbjct: 25435486 gacggtgttcctctccggcgggtcgacgaggttgtac 25435522



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 184      aaatgacagtgcaggaaccacacacctg 211
                ||||||||||||| |||||| |||||||
Sbjct: 36159512 aaatgacagtgcatgaaccatacacctg 36159539
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>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0663E10
          Length = 162297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 261    gacggtgttcctcaccggcggatccaccaggttgtac 297
              ||||||||||||| ||||||| || || |||||||||
Sbjct: 125486 gacggtgttcctctccggcgggtcgacgaggttgtac 125522
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>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full
            insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 360  gccatggaggtgcatggggtt 380
            |||||||||||||||||||||
Sbjct: 1549 gccatggaggtgcatggggtt 1529
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>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full
            insert sequence
          Length = 2066

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 184  aaatgacagtgcaggaaccacacacctgg 212
            ||||||||||||| |||||| ||||||||
Sbjct: 1744 aaatgacagtgcatgaaccatacacctgg 1716
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>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full
           insert sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 184 aaatgacagtgcaggaaccacacacctgg 212
           ||||||||||||| |||||| ||||||||
Sbjct: 320 aaatgacagtgcatgaaccatacacctgg 292
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>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds
          Length = 1874

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 184  aaatgacagtgcaggaaccacacacctgg 212
            ||||||||||||| |||||| ||||||||
Sbjct: 1550 aaatgacagtgcatgaaccatacacctgg 1522
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 261     gacggtgttcctcaccggcgg 281
               |||||||||||||||||||||
Sbjct: 1996453 gacggtgttcctcaccggcgg 1996433
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>gb|AY364319.1| Felis catus chromosome A2 endogenous virus endogenous feline leukemia
            virus enFeLV-GGAG, complete sequence
          Length = 9867

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 360  gccatggaggtgcatggggttagc 383
            ||||||||| ||||||||||||||
Sbjct: 7954 gccatggagatgcatggggttagc 7931
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>gb|AY364318.1| Felis catus chromosome A1 endogenous virus endogenous feline leukemia
            virus enFeLV-AGTT, complete sequence
          Length = 9895

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 360  gccatggaggtgcatggggttagc 383
            ||||||||| ||||||||||||||
Sbjct: 7967 gccatggagatgcatggggttagc 7944
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 285     caccaggttgtacgtcgcga 304
               ||||||||||||||||||||
Sbjct: 1635820 caccaggttgtacgtcgcga 1635801
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>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 gcccgagcccctgcgcgagg 345
           ||||||||||||||||||||
Sbjct: 405 gcccgagcccctgcgcgagg 386
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>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   ggaagagtcgaatccaaagttgga 132
             ||||||||| ||||||||||||||
Sbjct: 91740 ggaagagtcaaatccaaagttgga 91717
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>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 109    ggaagagtcgaatccaaagttgga 132
              ||||||||| ||||||||||||||
Sbjct: 177883 ggaagagtcaaatccaaagttgga 177860
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>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 184  aaatgacagtgcaggaaccacacacctggatt 215
            ||||||||||||| |||||| || ||||||||
Sbjct: 1706 aaatgacagtgcatgaaccaaacccctggatt 1675
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 422      ccaccgtggcattgtaccgcagcc 445
                |||||||||||||||||| |||||
Sbjct: 16376913 ccaccgtggcattgtaccacagcc 16376890
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>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 184   aaatgacagtgcaggaaccacacacctg 211
             ||||||||||||| |||||| |||||||
Sbjct: 36525 aaatgacagtgcatgaaccatacacctg 36552
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 422      ccaccgtggcattgtaccgcagcc 445
                |||||||||||||||||| |||||
Sbjct: 16330146 ccaccgtggcattgtaccacagcc 16330123
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>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 422   ccaccgtggcattgtaccgcagcc 445
             |||||||||||||||||| |||||
Sbjct: 75478 ccaccgtggcattgtaccacagcc 75501
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>gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 360  gccatggaggtgcatggggttagc 383
            ||||||||| ||||||||||||||
Sbjct: 1281 gccatggagatgcatggggttagc 1258
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>gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia virus envelope protein gene,
            complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 360  gccatggaggtgcatggggttagc 383
            ||||||||| ||||||||||||||
Sbjct: 1341 gccatggagatgcatggggttagc 1318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,647,497
Number of Sequences: 3902068
Number of extensions: 2647497
Number of successful extensions: 54292
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54008
Number of HSP's gapped (non-prelim): 282
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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