ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK058937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
2gb|U33283.1|OSU33283 Oryza sativa Ca2+ sensitive 3'(2'),5-diphos... 258 2e-65
3gb|AY111987.1| Zea mays CL10219_1 mRNA sequence 216 6e-53
4gb|AF288075.1|AF288075 Zea mays diphosphonucleotide phosphatase ... 200 3e-48
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
7emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial se... 135 2e-28
8gb|AY110005.1| Zea mays CL14808_1 mRNA sequence 60 8e-06
9emb|AJ310755.1|GHI310755 Gossypium hirsutum partial mRNA for 3'(... 44 0.46
10emb|BX276177.6| Zebrafish DNA sequence from clone CH211-223M11 i... 44 0.46
11ref|XM_468288.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.8
12gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 42 1.8
13gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 42 1.8
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
15gb|AC073874.4| Homo sapiens BAC clone RP11-586M15 from 2, comple... 42 1.8
16dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
17dbj|AK065057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
18emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-7... 42 1.8
19dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.8
20dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.8
21ref|XM_534124.2| PREDICTED: Canis familiaris similar to L-plasti... 40 7.2
22ref|XM_843311.1| PREDICTED: Canis familiaris similar to L-plasti... 40 7.2
23emb|AL357059.13| Human DNA sequence from clone RP11-153G5 on chr... 40 7.2
24emb|AL138900.12| Human DNA sequence from clone RP11-85G21 on chr... 40 7.2
25emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in ... 40 7.2
26gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 40 7.2
27gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Canc... 40 7.2
28gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, comple... 40 7.2
29gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complet... 40 7.2
30gb|AC158371.2| Pan troglodytes BAC clone CH251-423C22 from chrom... 40 7.2
31gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, c... 40 7.2
32emb|AL445886.3|CNS07EET Human chromosome 14 DNA sequence BAC R-3... 40 7.2
33gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Ho... 40 7.2
34emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-5... 40 7.2

>dbj|AK058937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F07, full
           insert sequence
          Length = 848

 Score =  258 bits (130), Expect = 2e-65
 Identities = 276/327 (84%)
 Strand = Plus / Minus

                                                                       
Query: 160 ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 219
           |||||| |||||||  |||||| ||| |||||||||||| || || |||| |||||||||
Sbjct: 605 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 546

                                                                       
Query: 220 tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 279
           ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 545 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 486

                                                                       
Query: 280 tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctgtgac 339
           ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||| ||
Sbjct: 485 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctgtcac 426

                                                                       
Query: 340 gacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtggaaaacg 399
           ||| ||||  ||||||||||||||||| ||||| ||  | ||||| ||||||||||||||
Sbjct: 425 gacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtggaaaacg 366

                                                                       
Query: 400 caagtaaatggcaccatcnccacggnccanancaccatattttgcttggctatctattct 459
           ||||||||||||||| || || ||| | |   |||| ||||||||||||||||| |||||
Sbjct: 365 caagtaaatggcaccgtcacctcgggctagggcaccgtattttgcttggctatcaattct 306

                                      
Query: 460 gactggangagcttgnacaccaanttt 486
            |||||| ||||||| ||||||| |||
Sbjct: 305 aactggaggagcttggacaccaagttt 279



to top

>gb|U33283.1|OSU33283 Oryza sativa Ca2+ sensitive 3'(2'),5-diphosphonucleoside 3'(2')
            phosphohydrolase mRNA, complete cds
          Length = 1480

 Score =  258 bits (130), Expect = 2e-65
 Identities = 276/327 (84%)
 Strand = Plus / Minus

                                                                        
Query: 160  ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 219
            |||||| |||||||  |||||| ||| |||||||||||| || || |||| |||||||||
Sbjct: 1236 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 1177

                                                                        
Query: 220  tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 279
            ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 1176 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 1117

                                                                        
Query: 280  tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctgtgac 339
            ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||| ||
Sbjct: 1116 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctgtcac 1057

                                                                        
Query: 340  gacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtggaaaacg 399
            ||| ||||  ||||||||||||||||| ||||| ||  | ||||| ||||||||||||||
Sbjct: 1056 gacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtggaaaacg 997

                                                                        
Query: 400  caagtaaatggcaccatcnccacggnccanancaccatattttgcttggctatctattct 459
            ||||||||||||||| || || ||| | |   |||| ||||||||||||||||| |||||
Sbjct: 996  caagtaaatggcaccgtcacctcgggctagggcaccgtattttgcttggctatcaattct 937

                                       
Query: 460  gactggangagcttgnacaccaanttt 486
             |||||| ||||||| ||||||| |||
Sbjct: 936  aactggaggagcttggacaccaagttt 910



to top

>gb|AY111987.1| Zea mays CL10219_1 mRNA sequence
          Length = 771

 Score =  216 bits (109), Expect = 6e-53
 Identities = 243/290 (83%)
 Strand = Plus / Plus

                                                                       
Query: 197 gcctcctggacagacttcaggagtgatggcatcaactgcttatttgtggcaatgatgcct 256
           ||||| |||||||  |||||||| || |||||||||| ||| || || || |||||||||
Sbjct: 389 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 448

                                                                       
Query: 257 gtgtcaacatcaagaaatcgccctttcgagaaatcaagatcgtttcctgaggcatctgtt 316
           ||||| | ||| ||||||| |||||| |||||||| |  |||||||| |  |||||||||
Sbjct: 449 gtgtcgagatcgagaaatctccctttggagaaatccaagtcgtttcccgcagcatctgtt 508

                                                                       
Query: 317 actacacctccagattctgtgacgacaattgcaccagctgcatgatcccatatcttttcc 376
           ||||  ||||||| |||||| ||||||||||  || |||||||| |||||||| || || 
Sbjct: 509 actatgcctccagcttctgtcacgacaattgatcctgctgcatggtcccatattttctct 568

                                                                       
Query: 377 ttataacccttgtgtggaaaacgcaagtaaatggcaccatcnccacggnccanancacca 436
            ||||||| ||||||||||| |||||||||||||| ||||| || ||| ||| | |||||
Sbjct: 569 ctataacctttgtgtggaaagcgcaagtaaatggcgccatcacctcgggccagagcacca 628

                                                             
Query: 437 tattttgcttggctatctattctgactggangagcttgnacaccaanttt 486
           |||||||||||||| || ||||| |||||| ||||||| ||||||| |||
Sbjct: 629 tattttgcttggctgtcgattctaactggaggagcttggacaccaagttt 678



to top

>gb|AF288075.1|AF288075 Zea mays diphosphonucleotide phosphatase 1 mRNA, complete cds
          Length = 1453

 Score =  200 bits (101), Expect = 3e-48
 Identities = 241/290 (83%)
 Strand = Plus / Minus

                                                                        
Query: 197  gcctcctggacagacttcaggagtgatggcatcaactgcttatttgtggcaatgatgcct 256
            ||||| |||||||  |||||||| || |||||||||| ||| || || || |||||||||
Sbjct: 1137 gcctcttggacagctttcaggagcgacggcatcaactccttgttggttgcgatgatgcct 1078

                                                                        
Query: 257  gtgtcaacatcaagaaatcgccctttcgagaaatcaagatcgtttcctgaggcatctgtt 316
            ||||| | ||| ||||||| |||||| |||||||| |  || ||||| |  |||||||||
Sbjct: 1077 gtgtcgagatccagaaatctccctttggagaaatccaagtcctttcccgcagcatctgtt 1018

                                                                        
Query: 317  actacacctccagattctgtgacgacaattgcaccagctgcatgatcccatatcttttcc 376
            ||||  ||||||| |||||| ||||||||||  ||  ||||||| |||||||| || || 
Sbjct: 1017 actatgcctccagcttctgtcacgacaattgatcctcctgcatggtcccatattttctct 958

                                                                        
Query: 377  ttataacccttgtgtggaaaacgcaagtaaatggcaccatcnccacggnccanancacca 436
             ||||||| ||||||||||| |||||||||||||| ||||| || ||| ||| | |||||
Sbjct: 957  ctataacctttgtgtggaaagcgcaagtaaatggcgccatcacctcgggccagagcacca 898

                                                              
Query: 437  tattttgcttggctatctattctgactggangagcttgnacaccaanttt 486
            |||||||||||||| || ||||| |||||| ||||||| ||||||| |||
Sbjct: 897  tattttgcttggctgtcgattctaactggaggagcttggacaccaagttt 848



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  135 bits (68), Expect = 2e-28
 Identities = 149/176 (84%)
 Strand = Plus / Plus

                                                                           
Query: 160     ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 219
               |||||| |||||||  |||||| ||| |||||||||||| || || |||| |||||||||
Sbjct: 4215833 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215892

                                                                           
Query: 220     tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 279
               ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 4215893 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215952

                                                                       
Query: 280     tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 335
               ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||
Sbjct: 4215953 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctg 4216008



 Score =  129 bits (65), Expect = 1e-26
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                           
Query: 333     ctgtgacgacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtg 392
               |||| ||||| ||||  ||||||||||||||||| ||||| ||  | ||||| |||||||
Sbjct: 4216168 ctgtcacgacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtg 4216227

                                                                           
Query: 393     gaaaacgcaagtaaatggcaccatcnccacggnccanancaccatattttgcttggctat 452
               |||||||||||||||||||||| || || ||| | |   |||| ||||||||||||||||
Sbjct: 4216228 gaaaacgcaagtaaatggcaccgtcacctcgggctagggcaccgtattttgcttggctat 4216287

                                                 
Query: 453     ctattctgactggangagcttgnacaccaanttt 486
               | ||||| |||||| ||||||| ||||||| |||
Sbjct: 4216288 caattctaactggaggagcttggacaccaagttt 4216321



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                           
Query: 386     ttgtgtggaaaacgcaagtaaatggcaccatcnccacggnccanancaccatattttgct 445
               ||||||||||| ||| | |||||||| ||||| ||  || | | | ||||||||||||||
Sbjct: 4212529 ttgtgtggaaatcgccaataaatggcgccatcaccttgggctacagcaccatattttgct 4212588

                                                        
Query: 446     tggctatctattctgactggangagcttgnacaccaanttt 486
               |||||||| ||||| |||||| ||||||| | ||||| |||
Sbjct: 4212589 tggctatcaattctaactggaggagcttgaataccaagttt 4212629



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 93/114 (81%)
 Strand = Plus / Plus

                                                                           
Query: 222     atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccctt 281
               |||||||||| |  |||||||| ||||| ||||| |  |||  ||||||| |||  ||||
Sbjct: 4212259 atggcatcaaatatttatttgttgcaataatgccagcatcacgatcaagatatctacctt 4212318

                                                                     
Query: 282     tcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 335
               | |||||||| | |||||||||||| |||||| |||| | |||||||| |||||
Sbjct: 4212319 tggagaaatccaaatcgtttcctgaagcatcttttaccaaacctccagcttctg 4212372



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  135 bits (68), Expect = 2e-28
 Identities = 149/176 (84%)
 Strand = Plus / Plus

                                                                           
Query: 160     ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 219
               |||||| |||||||  |||||| ||| |||||||||||| || || |||| |||||||||
Sbjct: 4215820 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 4215879

                                                                           
Query: 220     tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 279
               ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 4215880 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 4215939

                                                                       
Query: 280     tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 335
               ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||
Sbjct: 4215940 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctg 4215995



 Score =  129 bits (65), Expect = 1e-26
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                           
Query: 333     ctgtgacgacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtg 392
               |||| ||||| ||||  ||||||||||||||||| ||||| ||  | ||||| |||||||
Sbjct: 4216155 ctgtcacgacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtg 4216214

                                                                           
Query: 393     gaaaacgcaagtaaatggcaccatcnccacggnccanancaccatattttgcttggctat 452
               |||||||||||||||||||||| || || ||| | |   |||| ||||||||||||||||
Sbjct: 4216215 gaaaacgcaagtaaatggcaccgtcacctcgggctagggcaccgtattttgcttggctat 4216274

                                                 
Query: 453     ctattctgactggangagcttgnacaccaanttt 486
               | ||||| |||||| ||||||| ||||||| |||
Sbjct: 4216275 caattctaactggaggagcttggacaccaagttt 4216308



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                           
Query: 386     ttgtgtggaaaacgcaagtaaatggcaccatcnccacggnccanancaccatattttgct 445
               ||||||||||| ||| | |||||||| ||||| ||  || | | | ||||||||||||||
Sbjct: 4212516 ttgtgtggaaatcgccaataaatggcgccatcaccttgggctacagcaccatattttgct 4212575

                                                        
Query: 446     tggctatctattctgactggangagcttgnacaccaanttt 486
               |||||||| ||||| |||||| ||||||| | ||||| |||
Sbjct: 4212576 tggctatcaattctaactggaggagcttgaataccaagttt 4212616



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 93/114 (81%)
 Strand = Plus / Plus

                                                                           
Query: 222     atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccctt 281
               |||||||||| |  |||||||| ||||| ||||| |  |||  ||||||| |||  ||||
Sbjct: 4212246 atggcatcaaatatttatttgttgcaataatgccagcatcacgatcaagatatctacctt 4212305

                                                                     
Query: 282     tcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 335
               | |||||||| | |||||||||||| |||||| |||| | |||||||| |||||
Sbjct: 4212306 tggagaaatccaaatcgtttcctgaagcatcttttaccaaacctccagcttctg 4212359



to top

>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 104999

 Score =  135 bits (68), Expect = 2e-28
 Identities = 149/176 (84%)
 Strand = Plus / Minus

                                                                         
Query: 160   ctacaatggggaaggggcctggcttttctccttgatggcctcctggacagacttcaggag 219
             |||||| |||||||  |||||| ||| |||||||||||| || || |||| |||||||||
Sbjct: 67950 ctacaacggggaagcagcctggttttgctccttgatggcatcttgcacagccttcaggag 67891

                                                                         
Query: 220   tgatggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccc 279
             ||| ||||||| |||||| || || || ||||| |||||||| | ||||||||||| |||
Sbjct: 67890 tgaaggcatcagctgcttgttcgtcgcgatgatccctgtgtcgagatcaagaaatctccc 67831

                                                                     
Query: 280   tttcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 335
             ||| |||||||| | |||||||||||| |||||||| || | |||||||| |||||
Sbjct: 67830 tttggagaaatccaaatcgtttcctgatgcatctgtcaccagacctccagcttctg 67775



 Score =  129 bits (65), Expect = 1e-26
 Identities = 130/154 (84%)
 Strand = Plus / Minus

                                                                         
Query: 333   ctgtgacgacaattgcaccagctgcatgatcccatatcttttccttataacccttgtgtg 392
             |||| ||||| ||||  ||||||||||||||||| ||||| ||  | ||||| |||||||
Sbjct: 67615 ctgtcacgacgattgacccagctgcatgatcccagatcttctctctgtaacctttgtgtg 67556

                                                                         
Query: 393   gaaaacgcaagtaaatggcaccatcnccacggnccanancaccatattttgcttggctat 452
             |||||||||||||||||||||| || || ||| | |   |||| ||||||||||||||||
Sbjct: 67555 gaaaacgcaagtaaatggcaccgtcacctcgggctagggcaccgtattttgcttggctat 67496

                                               
Query: 453   ctattctgactggangagcttgnacaccaanttt 486
             | ||||| |||||| ||||||| ||||||| |||
Sbjct: 67495 caattctaactggaggagcttggacaccaagttt 67462



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                         
Query: 386   ttgtgtggaaaacgcaagtaaatggcaccatcnccacggnccanancaccatattttgct 445
             ||||||||||| ||| | |||||||| ||||| ||  || | | | ||||||||||||||
Sbjct: 71254 ttgtgtggaaatcgccaataaatggcgccatcaccttgggctacagcaccatattttgct 71195

                                                      
Query: 446   tggctatctattctgactggangagcttgnacaccaanttt 486
             |||||||| ||||| |||||| ||||||| | ||||| |||
Sbjct: 71194 tggctatcaattctaactggaggagcttgaataccaagttt 71154



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 93/114 (81%)
 Strand = Plus / Minus

                                                                         
Query: 222   atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaagaaatcgccctt 281
             |||||||||| |  |||||||| ||||| ||||| |  |||  ||||||| |||  ||||
Sbjct: 71524 atggcatcaaatatttatttgttgcaataatgccagcatcacgatcaagatatctacctt 71465

                                                                   
Query: 282   tcgagaaatcaagatcgtttcctgaggcatctgttactacacctccagattctg 335
             | |||||||| | |||||||||||| |||||| |||| | |||||||| |||||
Sbjct: 71464 tggagaaatccaaatcgtttcctgaagcatcttttaccaaacctccagcttctg 71411



to top

>gb|AY110005.1| Zea mays CL14808_1 mRNA sequence
          Length = 1272

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 432 caccatattttgcttggctatctattctgactggangagcttgnacaccaanttt 486
           |||||||||||||||||||||| ||||| || ||| ||||| | ||||||| |||
Sbjct: 459 caccatattttgcttggctatccattctaacaggaggagctcggacaccaagttt 513



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 295 atcgtttcctgaggcatctgttactacacctccagattctgtgacgacaattgcaccagc 354
           ||||||||||| ||||||| |||| |  || |||| ||||||||| | |||||  |||||
Sbjct: 322 atcgtttcctgcggcatcttttaccatgccaccagcttctgtgacaataattgatccagc 381

                       
Query: 355 tgcatgatccca 366
           ||||||||||||
Sbjct: 382 tgcatgatccca 393



to top

>emb|AJ310755.1|GHI310755 Gossypium hirsutum partial mRNA for 3'(2'),5'-bisphosphate
           nucleotidase (f1 gene)
          Length = 990

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 222 atggcatcaactgcttatttgtggcaatgatgcctgtgtcaacatcaaga 271
           |||||||||||| ||  || ||| |||||||||||||||| | |||||||
Sbjct: 600 atggcatcaacttctggttggtgacaatgatgcctgtgtccagatcaaga 551



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 87/110 (79%)
 Strand = Plus / Minus

                                                                       
Query: 350 ccagctgcatgatcccatatcttttccttataacccttgtgtggaaaacgcaagtaaatg 409
           ||||| |||||||||||||| |||||   ||| || |||||||||| |||||  || |||
Sbjct: 475 ccagcagcatgatcccatattttttctcgataccctttgtgtggaagacgcagatatatg 416

                                                             
Query: 410 gcaccatcnccacggnccanancaccatattttgcttggctatctattct 459
           || ||||| || | |   | | ||||||| ||||| |||||||| |||||
Sbjct: 415 gctccatctcctctggatagagcaccatactttgcctggctatcaattct 366



to top

>emb|BX276177.6| Zebrafish DNA sequence from clone CH211-223M11 in linkage group 20,
              complete sequence
          Length = 202340

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 75     taaacagtgtgaataaggtgtg 96
              ||||||||||||||||||||||
Sbjct: 152618 taaacagtgtgaataaggtgtg 152639



to top

>ref|XM_468288.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 350  ccagctgcatgatcccatatcttttcctt 378
            ||||| ||||||||||||||||| |||||
Sbjct: 1254 ccagcggcatgatcccatatcttctcctt 1226



to top

>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    ctggacagacttcaggagtga 222
              |||||||||||||||||||||
Sbjct: 376744 ctggacagacttcaggagtga 376724



to top

>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 350    ccagctgcatgatcccatatcttttcctt 378
              ||||| ||||||||||||||||| |||||
Sbjct: 123350 ccagcggcatgatcccatatcttctcctt 123322



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 350      ccagctgcatgatcccatatcttttcctt 378
                ||||| ||||||||||||||||| |||||
Sbjct: 34381756 ccagcggcatgatcccatatcttctcctt 34381784



to top

>gb|AC073874.4| Homo sapiens BAC clone RP11-586M15 from 2, complete sequence
          Length = 18461

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    tacacataaacagtgtgaata 89
             |||||||||||||||||||||
Sbjct: 15207 tacacataaacagtgtgaata 15227



to top

>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 350   ccagctgcatgatcccatatcttttcctt 378
             ||||| ||||||||||||||||| |||||
Sbjct: 79403 ccagcggcatgatcccatatcttctcctt 79431



to top

>dbj|AK065057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J07, full
            insert sequence
          Length = 1893

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 350  ccagctgcatgatcccatatcttttcctt 378
            ||||| ||||||||||||||||| |||||
Sbjct: 1254 ccagcggcatgatcccatatcttctcctt 1226



to top

>emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173106

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 359    tgatcccatatcttttcctta 379
              |||||||||||||||||||||
Sbjct: 111865 tgatcccatatcttttcctta 111885



to top

>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete
              sequences
          Length = 168406

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 444    cttggctatctattctgactg 464
              |||||||||||||||||||||
Sbjct: 163222 cttggctatctattctgactg 163202



to top

>dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-206H19, complete
            sequences
          Length = 179680

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 444  cttggctatctattctgactg 464
            |||||||||||||||||||||
Sbjct: 8411 cttggctatctattctgactg 8391



to top

>ref|XM_534124.2| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte
            cytosolic protein 1) (LCP-1) (LC64P), transcript variant
            1 (LOC476921), mRNA
          Length = 3110

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  tgtgtcaacatcaagaaatc 275
            ||||||||||||||||||||
Sbjct: 2579 tgtgtcaacatcaagaaatc 2560



to top

>ref|XM_843311.1| PREDICTED: Canis familiaris similar to L-plastin (Lymphocyte
            cytosolic protein 1) (LCP-1) (LC64P), transcript variant
            2 (LOC476921), mRNA
          Length = 3116

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  tgtgtcaacatcaagaaatc 275
            ||||||||||||||||||||
Sbjct: 2585 tgtgtcaacatcaagaaatc 2566



to top

>emb|AL357059.13| Human DNA sequence from clone RP11-153G5 on chromosome 10 Contains part
             of a novel gene (KIAA0534), complete sequence
          Length = 74127

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   tcccatatcttttccttata 381
             ||||||||||||||||||||
Sbjct: 14038 tcccatatcttttccttata 14057



to top

>emb|AL138900.12| Human DNA sequence from clone RP11-85G21 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 182025

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aacagtgtgaataaggtgtg 96
             ||||||||||||||||||||
Sbjct: 24291 aacagtgtgaataaggtgtg 24272



to top

>emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in linkage group 16,
             complete sequence
          Length = 238554

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   tgcatgatcccatatctttt 374
             ||||||||||||||||||||
Sbjct: 87439 tgcatgatcccatatctttt 87458



to top

>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tggcaatgatgcctgtgtca 262
            ||||||||||||||||||||
Sbjct: 5073 tggcaatgatgcctgtgtca 5092



to top

>gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177245

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    ttcaagccaaaataacttct 161
              ||||||||||||||||||||
Sbjct: 123424 ttcaagccaaaataacttct 123405



to top

>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence
          Length = 191041

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 432    caccatattttgcttggctatcta 455
              |||||||||||||||| |||||||
Sbjct: 151912 caccatattttgcttgcctatcta 151935



to top

>gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complete sequence
          Length = 173967

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   aaacggggaaggttcaagcc 149
             ||||||||||||||||||||
Sbjct: 35347 aaacggggaaggttcaagcc 35328



to top

>gb|AC158371.2| Pan troglodytes BAC clone CH251-423C22 from chromosome unknown, complete
              sequence
          Length = 154709

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     attgcatttgtccaaacaaa 59
              ||||||||||||||||||||
Sbjct: 145615 attgcatttgtccaaacaaa 145634



to top

>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    tggcaatgatgcctgtgtca 262
              ||||||||||||||||||||
Sbjct: 202694 tggcaatgatgcctgtgtca 202713



to top

>emb|AL445886.3|CNS07EET Human chromosome 14 DNA sequence BAC R-369B6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167398

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     attgcatttgtccaaacaaa 59
              ||||||||||||||||||||
Sbjct: 102149 attgcatttgtccaaacaaa 102130



to top

>gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 169902

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    attgcatttgtccaaacaaa 59
             ||||||||||||||||||||
Sbjct: 77297 attgcatttgtccaaacaaa 77316



to top

>emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-533L7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162986

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     attgcatttgtccaaacaaa 59
              ||||||||||||||||||||
Sbjct: 145954 attgcatttgtccaaacaaa 145935


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,173,017
Number of Sequences: 3902068
Number of extensions: 4173017
Number of successful extensions: 72364
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72203
Number of HSP's gapped (non-prelim): 159
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top