ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36f15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR674499.2|CNS0FJEX Tetraodon nigroviridis full-length cDNA 40 1.1
2emb|CT009542.22| Pig DNA sequence from clone CH242-272H8 on chro... 40 1.1
3ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 4.5
4gb|AC122505.4| Mus musculus BAC clone RP24-419P3 from chromosome... 38 4.5
5emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chro... 38 4.5
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
7dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
8dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
9dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.5
10gb|AC174640.3| Mus musculus BAC clone RP24-576A3 from chromosome... 38 4.5
11emb|AL928652.10| Mouse DNA sequence from clone RP23-300G1 on chr... 38 4.5
12dbj|AB065955.1| Homo sapiens gene for seven transmembrane helix ... 38 4.5

>emb|CR674499.2|CNS0FJEX Tetraodon nigroviridis full-length cDNA
          Length = 642

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 42  aacatcgtcatgtagaacaccagg 65
           |||||||||||| |||||||||||
Sbjct: 317 aacatcgtcatggagaacaccagg 340



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>emb|CT009542.22| Pig DNA sequence from clone CH242-272H8 on chromosome 7, complete
             sequence
          Length = 177899

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aacaccagggccatagcctt 76
             ||||||||||||||||||||
Sbjct: 68355 aacaccagggccatagcctt 68336



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>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA
          Length = 1611

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 40   ataacatcgtcatgtagaacaccaggg 66
            ||||||||||||||| ||||| |||||
Sbjct: 1562 ataacatcgtcatgtcgaacagcaggg 1536



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>gb|AC122505.4| Mus musculus BAC clone RP24-419P3 from chromosome 6, complete sequence
          Length = 161366

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     caaatgtttcaggaacatc 19
             |||||||||||||||||||
Sbjct: 82548 caaatgtttcaggaacatc 82566



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>emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chromosome 1 Contains the
             CELSR2 gene for cadherin, EGF LAG seven-pass G-type
             receptor 2 (flamingo homolog, Drosophila), the gene for
             differential display and activated by p53 (DDA3), the gene
             for novel protein similar to Myosin-binding protein H
             (MyBP-H) (H-protein) (LOC343263), the SORT1 gene for
             sortilin 1 and the 3' end of the PSMA5 gene for proteasome
             (prosome, macropain) subunit, alpha type, 5, complete
             sequence
          Length = 169241

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgtagaacaccagggcca 69
             |||||||||||||||||||
Sbjct: 20649 atgtagaacaccagggcca 20631



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 40       ataacatcgtcatgtagaacaccaggg 66
                ||||||||||||||| ||||| |||||
Sbjct: 30158295 ataacatcgtcatgtcgaacagcaggg 30158321



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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0685G12
          Length = 149155

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 40     ataacatcgtcatgtagaacaccaggg 66
              ||||||||||||||| ||||| |||||
Sbjct: 137892 ataacatcgtcatgtcgaacagcaggg 137918



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>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_G07
          Length = 93240

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 40    ataacatcgtcatgtagaacaccaggg 66
             ||||||||||||||| ||||| |||||
Sbjct: 30999 ataacatcgtcatgtcgaacagcaggg 31025



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>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full
            insert sequence
          Length = 1611

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 40   ataacatcgtcatgtagaacaccaggg 66
            ||||||||||||||| ||||| |||||
Sbjct: 1562 ataacatcgtcatgtcgaacagcaggg 1536



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>gb|AC174640.3| Mus musculus BAC clone RP24-576A3 from chromosome 6, complete sequence
          Length = 270621

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     caaatgtttcaggaacatc 19
             |||||||||||||||||||
Sbjct: 65771 caaatgtttcaggaacatc 65789



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>emb|AL928652.10| Mouse DNA sequence from clone RP23-300G1 on chromosome 4, complete
            sequence
          Length = 37820

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 61   ccagggccatagccttgct 79
            |||||||||||||||||||
Sbjct: 4497 ccagggccatagccttgct 4479



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>dbj|AB065955.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds,
             isolate:CBRC7TM_518
          Length = 24370

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    atgtagaacaccagggcca 69
             |||||||||||||||||||
Sbjct: 17520 atgtagaacaccagggcca 17502


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 580,098
Number of Sequences: 3902068
Number of extensions: 580098
Number of successful extensions: 49984
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49954
Number of HSP's gapped (non-prelim): 30
length of query: 102
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 81
effective length of database: 17,151,101,840
effective search space: 1389239249040
effective search space used: 1389239249040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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