ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags36f08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069O21, full insert sequence Length = 2552 Score = 161 bits (81), Expect = 3e-36 Identities = 210/253 (83%) Strand = Plus / Minus Query: 290 attgctgcccttcgaagaactcgcccaggagtttgtccaccagttcggggctgtatctga 349 ||||||| ||||||||||| || |||| || | ||||||| || |||||||| || | Sbjct: 2150 attgctgtccttcgaagaattcccccaacagctgctccaccatctctgggctgtacctca 2091 Query: 350 tgtacttcagcggattcttgccgctcccaacaagattgccgaaacgttttatgaaagatc 409 ||| || |||| |||||||| || ||||||| || ||||||||||| | || || | Sbjct: 2090 cgtatttgtgcgggttcttgccattctcaacaaggttaccgaaacgtttgacaaacgacc 2031 Query: 410 gataggctggcaacagaacctcagctatagcaagcctcaaggattcacgcaattcttgat 469 |||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 2030 gataggctggtaacagaacctcagctaccgcaagcctcaaggattcacgcaattcctgat 1971 Query: 470 caggtacaatccatagagattgcttcgcgtgaagttcttcaaattgcgtattgaatgctt 529 ||||||||||||| |||||||||| || || || ||||| |||||| | ||||| | || Sbjct: 1970 caggtacaatccactgagattgctttgcatggagctcttcgaattgcatgttgaaagatt 1911 Query: 530 taaaccgttcttt 542 ||||||||||||| Sbjct: 1910 taaaccgttcttt 1898
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 388 ccgaaacgttttatgaaagatcgataggctggcaacagaacctcagctatagcaagcctc 447 ||||||||||| | || || ||||||||||| |||||||||||||||| ||||||||| Sbjct: 23258 ccgaaacgtttgacaaacgaccgataggctggtaacagaacctcagctaccgcaagcctc 23317 Query: 448 aaggattcacgcaattcttgatcaggtacaatccatagagattgcttcgcgtgaagttct 507 ||||||||||||||||| ||||||||||||||||| |||||||||| || || || ||| Sbjct: 23318 aaggattcacgcaattcctgatcaggtacaatccactgagattgctttgcatggagctct 23377 Query: 508 tcaaattgcgtattgaatgctttaaacc 535 || |||||| | ||||| | |||||||| Sbjct: 23378 tcgaattgcatgttgaaagatttaaacc 23405
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 388 ccgaaacgttttatgaaagatcgataggctggcaacagaacctcagctatagcaagcctc 447 ||||||||||| | || || ||||||||||| |||||||||||||||| ||||||||| Sbjct: 2743451 ccgaaacgtttgacaaacgaccgataggctggtaacagaacctcagctaccgcaagcctc 2743510 Query: 448 aaggattcacgcaattcttgatcaggtacaatccatagagattgcttcgcgtgaagttct 507 ||||||||||||||||| ||||||||||||||||| |||||||||| || || || ||| Sbjct: 2743511 aaggattcacgcaattcctgatcaggtacaatccactgagattgctttgcatggagctct 2743570 Query: 508 tcaaattgcgtattgaatgctttaaacc 535 || |||||| | ||||| | |||||||| Sbjct: 2743571 tcgaattgcatgttgaaagatttaaacc 2743598
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 388 ccgaaacgttttatgaaagatcgataggctggcaacagaacctcagctatagcaagcctc 447 ||||||||||| | || || ||||||||||| |||||||||||||||| ||||||||| Sbjct: 2752482 ccgaaacgtttgacaaacgaccgataggctggtaacagaacctcagctaccgcaagcctc 2752541 Query: 448 aaggattcacgcaattcttgatcaggtacaatccatagagattgcttcgcgtgaagttct 507 ||||||||||||||||| ||||||||||||||||| |||||||||| || || || ||| Sbjct: 2752542 aaggattcacgcaattcctgatcaggtacaatccactgagattgctttgcatggagctct 2752601 Query: 508 tcaaattgcgtattgaatgctttaaacc 535 || |||||| | ||||| | |||||||| Sbjct: 2752602 tcgaattgcatgttgaaagatttaaacc 2752629
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 123 bits (62), Expect = 6e-25 Identities = 116/134 (86%) Strand = Plus / Plus Query: 391 aaacgttttatgaaagatcgataggctggcaacagaacctcagctatagcaagcctcaag 450 |||||||| |||||||| |||||||||||||| ||||| ||||| | |||||| |||| Sbjct: 2986476 aaacgtttgatgaaagaccgataggctggcaagagaacttcagcaacagcaagtctcaga 2986535 Query: 451 gattcacgcaattcttgatcaggtacaatccatagagattgcttcgcgtgaagttcttca 510 ||||| ||||||||||||||||||| | ||||| ||| |||||| || ||||| |||||| Sbjct: 2986536 gattctcgcaattcttgatcaggtatagtccattgagtttgcttagcatgaagctcttca 2986595 Query: 511 aattgcgtattgaa 524 |||||| ||||||| Sbjct: 2986596 aattgcatattgaa 2986609
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 123 bits (62), Expect = 6e-25 Identities = 116/134 (86%) Strand = Plus / Plus Query: 391 aaacgttttatgaaagatcgataggctggcaacagaacctcagctatagcaagcctcaag 450 |||||||| |||||||| |||||||||||||| ||||| ||||| | |||||| |||| Sbjct: 2986420 aaacgtttgatgaaagaccgataggctggcaagagaacttcagcaacagcaagtctcaga 2986479 Query: 451 gattcacgcaattcttgatcaggtacaatccatagagattgcttcgcgtgaagttcttca 510 ||||| ||||||||||||||||||| | ||||| ||| |||||| || ||||| |||||| Sbjct: 2986480 gattctcgcaattcttgatcaggtatagtccattgagtttgcttagcatgaagctcttca 2986539 Query: 511 aattgcgtattgaa 524 |||||| ||||||| Sbjct: 2986540 aattgcatattgaa 2986553
>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145661 Score = 123 bits (62), Expect = 6e-25 Identities = 116/134 (86%) Strand = Plus / Minus Query: 391 aaacgttttatgaaagatcgataggctggcaacagaacctcagctatagcaagcctcaag 450 |||||||| |||||||| |||||||||||||| ||||| ||||| | |||||| |||| Sbjct: 29626 aaacgtttgatgaaagaccgataggctggcaagagaacttcagcaacagcaagtctcaga 29567 Query: 451 gattcacgcaattcttgatcaggtacaatccatagagattgcttcgcgtgaagttcttca 510 ||||| ||||||||||||||||||| | ||||| ||| |||||| || ||||| |||||| Sbjct: 29566 gattctcgcaattcttgatcaggtatagtccattgagtttgcttagcatgaagctcttca 29507 Query: 511 aattgcgtattgaa 524 |||||| ||||||| Sbjct: 29506 aattgcatattgaa 29493
>gb|BT017949.1| Zea mays clone EL01N0522B07.c mRNA sequence Length = 1300 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 391 aaacgttttatgaaagatcgataggctggcaacag 425 |||||||||||||| ||||| ||||| |||||||| Sbjct: 977 aaacgttttatgaatgatcggtaggcaggcaacag 943
>gb|AY108407.1| Zea mays PCO110242 mRNA sequence Length = 1245 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 391 aaacgttttatgaaagatcgataggctggcaacag 425 |||||||||||||| ||||| ||||| |||||||| Sbjct: 768 aaacgttttatgaatgatcggtaggcaggcaacag 734
>emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in linkage group 4, complete sequence Length = 263674 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 ccatgtgagccactgagactac 111 |||||||||||||||||||||| Sbjct: 229810 ccatgtgagccactgagactac 229831
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence Length = 167559 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 ccttttcttttctgtggtggt 144 ||||||||||||||||||||| Sbjct: 94776 ccttttcttttctgtggtggt 94796
>ref|XM_516710.1| PREDICTED: Pan troglodytes similar to zinc finger protein 148 (pHZ-52); zinc finger protein 148 (pHZ-52), BERF-1, ZBP-89 (LOC460650), mRNA Length = 4199 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tatattatgatagaacaagg 49 |||||||||||||||||||| Sbjct: 3060 tatattatgatagaacaagg 3041
>gb|M99575.1|BBOMER77K Babesia bovis 85 kDa merozoite protein gene, complete cds Length = 2026 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ctggtagtttgaaggacgac 69 |||||||||||||||||||| Sbjct: 1518 ctggtagtttgaaggacgac 1499
>gb|AY727909.1| Babesia bovis BV80 merozoite protein gene, partial cds Length = 1418 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ctggtagtttgaaggacgac 69 |||||||||||||||||||| Sbjct: 1292 ctggtagtttgaaggacgac 1273
>emb|AL441985.9| Human DNA sequence from clone RP11-417D4 on chromosome X Contains a pseudogene similar to part of ubiquitin-conjugating enzyme E2, complete sequence Length = 185969 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ttttctgtggtggtcactat 150 |||||||||||||||||||| Sbjct: 181904 ttttctgtggtggtcactat 181885
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agcaaacccttttcttttct 136 |||||||||||||||||||| Sbjct: 161555 agcaaacccttttcttttct 161536
>emb|AJ719915.1| Gallus gallus mRNA for hypothetical protein, clone 8d16 Length = 2829 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ttgacagggatctctgtggg 232 |||||||||||||||||||| Sbjct: 891 ttgacagggatctctgtggg 872
>ref|NM_001006531.1| Gallus gallus syntaxin 6 (STX6), mRNA Length = 2829 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ttgacagggatctctgtggg 232 |||||||||||||||||||| Sbjct: 891 ttgacagggatctctgtggg 872
>gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromosome ul, complete sequence Length = 215430 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 agcattgctgctactgtgca 190 |||||||||||||||||||| Sbjct: 76402 agcattgctgctactgtgca 76383
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agcaaacccttttcttttct 136 |||||||||||||||||||| Sbjct: 19069630 agcaaacccttttcttttct 19069611
>emb|AL929123.9| Mouse DNA sequence from clone RP23-328K3 on chromosome 4, complete sequence Length = 208830 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 caccttacaggcgatgctgg 273 |||||||||||||||||||| Sbjct: 81646 caccttacaggcgatgctgg 81627
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agcaaacccttttcttttct 136 |||||||||||||||||||| Sbjct: 3151 agcaaacccttttcttttct 3132
>gb|AC170813.3| Rhesus Macaque BAC CH250-421G6 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165221 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tgagactacgaaacagcaaa 122 |||||||||||||||||||| Sbjct: 141381 tgagactacgaaacagcaaa 141362 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,865,774 Number of Sequences: 3902068 Number of extensions: 4865774 Number of successful extensions: 75960 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75777 Number of HSP's gapped (non-prelim): 182 length of query: 542 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 519 effective length of database: 17,143,297,704 effective search space: 8897371508376 effective search space used: 8897371508376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
