ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 230 4e-57
2dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 230 4e-57
3dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 230 4e-57
4dbj|AK104476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
5dbj|AK102447.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
6dbj|AK067413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
7dbj|AK060858.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
8gb|AY104255.1| Zea mays PCO124332 mRNA sequence 230 4e-57
9gb|BT018954.1| Zea mays clone Contig146.F mRNA sequence 222 9e-55
10ref|XM_479828.1| Oryza sativa (japonica cultivar-group), mRNA 220 4e-54
11gb|AY104701.1| Zea mays PCO096148 mRNA sequence 64 5e-07
12gb|AY596597.1| Saccharum officinarum clone SCCCLR1C01H06, comple... 56 1e-04
13ref|NM_118613.1| Arabidopsis thaliana unknown protein AT4G24800 ... 50 0.008
14ref|NM_001036631.1| Arabidopsis thaliana unknown protein AT4G248... 50 0.008
15emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, ... 50 0.008
16emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC... 50 0.008
17gb|AY124878.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, comp... 50 0.008
18gb|AY062102.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, comp... 50 0.008
19dbj|AK221703.1| Arabidopsis thaliana mRNA for hypothetical prote... 50 0.008
20gb|AC115304.3| Mus musculus BAC clone RP24-156K1 from 15, comple... 44 0.47
21gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 44 0.47
22gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 44 0.47
23gb|AC147366.5| Mus musculus BAC clone RP23-386J3 from 15, comple... 44 0.47
24gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, co... 42 1.8
25gb|BC066970.1| Homo sapiens cDNA clone IMAGE:4375525 42 1.8
26emb|CR615037.1| full-length cDNA clone CS0DC023YF15 of Neuroblas... 42 1.8
27emb|CR611404.1| full-length cDNA clone CS0DI073YJ10 of Placenta ... 42 1.8
28dbj|AK092547.1| Homo sapiens cDNA FLJ35228 fis, clone PROST2001283 42 1.8
29dbj|AK148051.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 42 1.8
30ref|XM_939117.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.8
31ref|XM_928252.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.8
32gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, com... 42 1.8
33gb|AC009996.7|AC009996 Homo sapiens chromosome 15 clone RP11-151... 42 1.8
34gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, comple... 42 1.8
35ref|NM_114699.3| Arabidopsis thaliana unknown protein AT3G48390 ... 40 7.3
36gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome... 40 7.3
37emb|AL354993.24| Human DNA sequence from clone RP5-823G15 on chr... 40 7.3
38emb|AL136307.12| Human DNA sequence from clone RP3-380B8 on chro... 40 7.3
39emb|CR536620.6| Zebrafish DNA sequence from clone CH211-235C15 i... 40 7.3
40gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome... 40 7.3
41emb|AL049659.2|ATT29H11 Arabidopsis thaliana DNA chromosome 3, B... 40 7.3
42gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromo... 40 7.3
43gb|AC144537.16| Glycine max clone gmw1-42i18, complete sequence 40 7.3
44gb|AY074567.1| Arabidopsis thaliana AT3g48390/T29H11_90 mRNA, co... 40 7.3
45gb|AC015463.7| Homo sapiens, clone RP11-114I9, complete sequence 40 7.3
46gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, co... 40 7.3
47gb|AC011966.7|AC011966 Homo sapiens chromosome 15, clone RP11-28... 40 7.3
48gb|AC107028.5| Homo sapiens 3 BAC RP11-547K2 (Roswell Park Cance... 40 7.3
49gb|AC079922.5| Homo sapiens BAC clone RP11-368A17 from 2, comple... 40 7.3
50gb|AC112230.5| Homo sapiens BAC clone RP11-85D18 from 2, complet... 40 7.3
51gb|BT002208.1| Arabidopsis thaliana At3g48390/T29H11_90 mRNA, co... 40 7.3
52gb|AC121548.17| Mus musculus chromosome 5, clone RP24-86E4, comp... 40 7.3 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                           
Query: 256     cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
               |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 1115754 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 1115813

                                                                           
Query: 315     cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
               |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 1115814 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 1115873

                                                                           
Query: 375     ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
               ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 1115874 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 1115933

                                                                           
Query: 435     ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
               |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 1115934 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 1115993

                                                          
Query: 495     gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
               |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 1115994 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 1116036
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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                         
Query: 256   cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
             |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 28991 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 29050

                                                                         
Query: 315   cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
             |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 29051 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 29110

                                                                         
Query: 375   ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
             ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 29111 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 29170

                                                                         
Query: 435   ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
             |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 29171 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 29230

                                                        
Query: 495   gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
             |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 29231 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 29273
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>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_B05
          Length = 144799

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                          
Query: 256    cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
              |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 144281 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 144340

                                                                          
Query: 315    cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
              |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 144341 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 144400

                                                                          
Query: 375    ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
              ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 144401 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 144460

                                                                          
Query: 435    ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
              |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 144461 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 144520

                                                         
Query: 495    gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
              |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 144521 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 144563
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>dbj|AK104476.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F02, full
           insert sequence
          Length = 995

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 256 cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
           |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 668 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 609

                                                                       
Query: 315 cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
           |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 608 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 549

                                                                       
Query: 375 ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
           ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 548 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 489

                                                                       
Query: 435 ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
           |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 488 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 429

                                                      
Query: 495 gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
           |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 428 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 386
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>dbj|AK102447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093O03, full
            insert sequence
          Length = 2790

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                        
Query: 256  cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
            |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 2371 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 2312

                                                                        
Query: 315  cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
            |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 2311 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 2252

                                                                        
Query: 375  ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
            ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 2251 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 2192

                                                                        
Query: 435  ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
            |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 2191 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 2132

                                                       
Query: 495  gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
            |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 2131 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 2089
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>dbj|AK067413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100H24, full
            insert sequence
          Length = 2320

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                        
Query: 256  cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
            |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 1988 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 1929

                                                                        
Query: 315  cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
            |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 1928 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 1869

                                                                        
Query: 375  ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
            ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 1868 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 1809

                                                                        
Query: 435  ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
            |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 1808 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 1749

                                                       
Query: 495  gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
            |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 1748 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 1706
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>dbj|AK060858.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F06, full
           insert sequence
          Length = 995

 Score =  230 bits (116), Expect = 4e-57
 Identities = 242/283 (85%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 256 cggtccagcttgatgcttcctgtttgctcagt-catcggttcaagtcgaagcagcaacgc 314
           |||||||||||||||||||||| |  ||||   ||| ||||||||  |||| ||| ||||
Sbjct: 668 cggtccagcttgatgcttcctgctcactcataacattggttcaagctgaagtagcgacgc 609

                                                                       
Query: 315 cgaaagagggtacgagccatccgttcttcttcccattctccacgtaggagaggaacttgt 374
           |||| |||||||  ||||||||| |||||||  ||| |||||| ||||| |||||||| |
Sbjct: 608 cgaatgagggtagaagccatccgctcttcttggcatgctccacataggacaggaacttct 549

                                                                       
Query: 375 ccctggcatcaggtatgtcgagggccagatcgtcaagcccgtccctgacccttgagaacc 434
           ||||||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct: 548 ccctggcatcaggaatatcgagagccagatcatcaagcccatccctcacccttgagaacc 489

                                                                       
Query: 435 ccttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagcanagcaa 494
           |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| | | |
Sbjct: 488 ccttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgcagcagaccga 429

                                                      
Query: 495 gcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
           |  | |  || |||||||| |||||||||||||| ||||||||
Sbjct: 428 ggatcctgtcgttcttcttttccattgccatgacaagcgcctt 386
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>gb|AY104255.1| Zea mays PCO124332 mRNA sequence
          Length = 1019

 Score =  230 bits (116), Expect = 4e-57
 Identities = 163/179 (91%)
 Strand = Plus / Minus

                                                                       
Query: 359 taggagaggaacttgtccctggcatcaggtatgtcgagggccagatcgtcaagcccgtcc 418
           ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 675 taggaaaggaacttctccctggcatcaggaatgtcgagagccagatcgtcaagcccgtcc 616

                                                                       
Query: 419 ctgacccttgagaaccccttggtcatctggttgatggttatgatcccttcgccaaagcac 478
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 615 ctgacccttgagaaccccttggtcatctggttgatggttatgatcccttcaccaaagcac 556

                                                                      
Query: 479 tcgtgcagcanagcaagcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
           || |||||||     || || | ||| |||||||||||||||||||| |||||||||||
Sbjct: 555 tcctgcagcaggttcagggtcctctcgttcttcttctccattgccatcacgagcgcctt 497
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>gb|BT018954.1| Zea mays clone Contig146.F mRNA sequence
          Length = 1057

 Score =  222 bits (112), Expect = 9e-55
 Identities = 162/179 (90%)
 Strand = Plus / Minus

                                                                       
Query: 359 taggagaggaacttgtccctggcatcaggtatgtcgagggccagatcgtcaagcccgtcc 418
           ||||| |||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 709 taggaaaggaacttctccctggcatcaggaatgtcgagagccagatcgtcgagcccgtcc 650

                                                                       
Query: 419 ctgacccttgagaaccccttggtcatctggttgatggttatgatcccttcgccaaagcac 478
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 649 ctgacccttgagaaccccttggtcatctggttgatggttatgatcccttcaccaaagcac 590

                                                                      
Query: 479 tcgtgcagcanagcaagcgtgccctctttcttcttctccattgccatgacgagcgcctt 537
           || |||||||     || || | ||| |||||||||||||||||||| |||||||||||
Sbjct: 589 tcctgcagcaggttcagggtcctctcattcttcttctccattgccatcacgagcgcctt 531
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>ref|XM_479828.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2362

 Score =  220 bits (111), Expect = 4e-54
 Identities = 212/246 (86%)
 Strand = Plus / Minus

                                                                        
Query: 292  ggttcaagtcgaagcagcaacgccgaaagagggtacgagccatccgttcttcttcccatt 351
            ||||||||  |||| ||| |||||||| |||||||  ||||||||| |||||||  ||| 
Sbjct: 2334 ggttcaagctgaagtagcgacgccgaatgagggtagaagccatccgctcttcttggcatg 2275

                                                                        
Query: 352  ctccacgtaggagaggaacttgtccctggcatcaggtatgtcgagggccagatcgtcaag 411
            |||||| ||||| |||||||| |||||||||||||| || ||||| |||||||| |||||
Sbjct: 2274 ctccacataggacaggaacttctccctggcatcaggaatatcgagagccagatcatcaag 2215

                                                                        
Query: 412  cccgtccctgacccttgagaaccccttggtcatctggttgatggttatgatcccttcgcc 471
            ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 2214 cccatccctcacccttgagaaccccttggtcatctggttgatggtgatgatcccttcacc 2155

                                                                        
Query: 472  aaagcactcgtgcagcanagcaagcgtgccctctttcttcttctccattgccatgacgag 531
            ||||||||| ||||||| | | ||  | |  || |||||||| |||||||||||||| ||
Sbjct: 2154 aaagcactcctgcagcagaccgaggatcctgtcgttcttcttttccattgccatgacaag 2095

                  
Query: 532  cgcctt 537
            ||||||
Sbjct: 2094 cgcctt 2089
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>gb|AY104701.1| Zea mays PCO096148 mRNA sequence
          Length = 2251

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 437  ttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagca 488
            ||||||||||||||||||||||||| ||| ||||| || ||||| |||||||
Sbjct: 1839 ttggtcatctggttgatggttatgagcccctcgccgaaacactcctgcagca 1788
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>gb|AY596597.1| Saccharum officinarum clone SCCCLR1C01H06, complete sequence
          Length = 2436

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 437  ttggtcatctggttgatggttatgatcccttcgccaaagcactcgtgcagca 488
            ||||||||||||||||||||||| | ||| ||||| || ||||| |||||||
Sbjct: 2035 ttggtcatctggttgatggttatcagcccctcgccgaaacactcctgcagca 1984
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>ref|NM_118613.1| Arabidopsis thaliana unknown protein AT4G24800 transcript variant
            AT4G24800.1 mRNA, complete cds
          Length = 2640

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 401  agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
            ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 2224 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 2165

             
Query: 461  a 461
            |
Sbjct: 2164 a 2164



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 338  ttcttcttcccattctccacgtag 361
            ||||||||||||| ||||||||||
Sbjct: 2287 ttcttcttcccatactccacgtag 2264
to top
>ref|NM_001036631.1| Arabidopsis thaliana unknown protein AT4G24800 transcript variant
            AT4G24800.2 mRNA, complete cds
          Length = 2728

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 401  agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
            ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 2312 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 2253

             
Query: 461  a 461
            |
Sbjct: 2252 a 2252



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 338  ttcttcttcccattctccacgtag 361
            ||||||||||||| ||||||||||
Sbjct: 2375 ttcttcttcccatactccacgtag 2352
to top
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62
          Length = 197070

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 401   agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
             ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 59087 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 59028

              
Query: 461   a 461
             |
Sbjct: 59027 a 59027



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   ttcttcttcccattctccacgtag 361
             ||||||||||||| ||||||||||
Sbjct: 59150 ttcttcttcccatactccacgtag 59127
to top
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6I7 (ESSA project)
          Length = 95185

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 401   agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
             ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 29663 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 29604

              
Query: 461   a 461
             |
Sbjct: 29603 a 29603



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   ttcttcttcccattctccacgtag 361
             ||||||||||||| ||||||||||
Sbjct: 29726 ttcttcttcccatactccacgtag 29703
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>gb|AY124878.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, complete cds
          Length = 2109

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 401  agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
            ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 1988 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 1929

             
Query: 461  a 461
            |
Sbjct: 1928 a 1928



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 338  ttcttcttcccattctccacgtag 361
            ||||||||||||| ||||||||||
Sbjct: 2051 ttcttcttcccatactccacgtag 2028
to top
>gb|AY062102.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, complete cds
          Length = 2641

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 401  agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
            ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 2225 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 2166

             
Query: 461  a 461
            |
Sbjct: 2165 a 2165



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 338  ttcttcttcccattctccacgtag 361
            ||||||||||||| ||||||||||
Sbjct: 2288 ttcttcttcccatactccacgtag 2265
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>dbj|AK221703.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL15-48-P09
          Length = 2539

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 401  agatcgtcaagcccgtccctgacccttgagaaccccttggtcatctggttgatggttatg 460
            ||||| ||||| |||||  |||| |||| |||||| ||||||||||||||  ||||||||
Sbjct: 2162 agatcttcaagtccgtctttgactcttgtgaaccctttggtcatctggtttgtggttatg 2103

             
Query: 461  a 461
            |
Sbjct: 2102 a 2102



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 338  ttcttcttcccattctccacgtag 361
            ||||||||||||| ||||||||||
Sbjct: 2225 ttcttcttcccatactccacgtag 2202
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>gb|AC115304.3| Mus musculus BAC clone RP24-156K1 from 15, complete sequence
          Length = 144026

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 416   tccctgacccttgagaacccct 437
             ||||||||||||||||||||||
Sbjct: 36217 tccctgacccttgagaacccct 36196
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 340     cttcttcccattctccacgtag 361
               ||||||||||||||||||||||
Sbjct: 1172518 cttcttcccattctccacgtag 1172497
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 340     cttcttcccattctccacgtag 361
               ||||||||||||||||||||||
Sbjct: 3052805 cttcttcccattctccacgtag 3052826
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>gb|AC147366.5| Mus musculus BAC clone RP23-386J3 from 15, complete sequence
          Length = 175781

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 416   tccctgacccttgagaacccct 437
             ||||||||||||||||||||||
Sbjct: 35398 tccctgacccttgagaacccct 35419
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>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence
          Length = 165774

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    gctgtaataagcaaaaatgtc 45
             |||||||||||||||||||||
Sbjct: 50362 gctgtaataagcaaaaatgtc 50342
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>gb|BC066970.1| Homo sapiens cDNA clone IMAGE:4375525
          Length = 1865

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  tttcttcttctccattgccat 525
            |||||||||||||||||||||
Sbjct: 1452 tttcttcttctccattgccat 1432
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>emb|CR615037.1| full-length cDNA clone CS0DC023YF15 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1761

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  tttcttcttctccattgccat 525
            |||||||||||||||||||||
Sbjct: 1392 tttcttcttctccattgccat 1372
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>emb|CR611404.1| full-length cDNA clone CS0DI073YJ10 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1455

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  tttcttcttctccattgccat 525
            |||||||||||||||||||||
Sbjct: 1088 tttcttcttctccattgccat 1068
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>dbj|AK092547.1| Homo sapiens cDNA FLJ35228 fis, clone PROST2001283
          Length = 2613

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  tttcttcttctccattgccat 525
            |||||||||||||||||||||
Sbjct: 1202 tttcttcttctccattgccat 1182
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>dbj|AK148051.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370004A16 product:unclassifiable, full insert
            sequence
          Length = 3994

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 25   gctgtaataagcaaaaatgtc 45
            |||||||||||||||||||||
Sbjct: 3478 gctgtaataagcaaaaatgtc 3498
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>ref|XM_939117.1| PREDICTED: Homo sapiens hypothetical protein LOC650026 (LOC650026),
            mRNA
          Length = 3344

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  tttcttcttctccattgccat 525
            |||||||||||||||||||||
Sbjct: 1527 tttcttcttctccattgccat 1507
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>ref|XM_928252.1| PREDICTED: Homo sapiens hypothetical protein LOC645212 (LOC645212),
            mRNA
          Length = 3344

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  tttcttcttctccattgccat 525
            |||||||||||||||||||||
Sbjct: 1527 tttcttcttctccattgccat 1507
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>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     gctgtaataagcaaaaatgtc 45
              |||||||||||||||||||||
Sbjct: 149490 gctgtaataagcaaaaatgtc 149470
to top
>gb|AC009996.7|AC009996 Homo sapiens chromosome 15 clone RP11-151N17 map 15q15, complete
             sequence
          Length = 162495

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 505   tttcttcttctccattgccat 525
             |||||||||||||||||||||
Sbjct: 20730 tttcttcttctccattgccat 20750
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>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence
          Length = 220183

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 503    tctttcttcttctccattgcc 523
              |||||||||||||||||||||
Sbjct: 193486 tctttcttcttctccattgcc 193506
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>ref|NM_114699.3| Arabidopsis thaliana unknown protein AT3G48390 mRNA, complete cds
          Length = 2304

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  ttcttcttctccattgccat 525
            ||||||||||||||||||||
Sbjct: 1867 ttcttcttctccattgccat 1848
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>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence
          Length = 158788

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    gaacacagcaaagaacagca 84
             ||||||||||||||||||||
Sbjct: 53306 gaacacagcaaagaacagca 53287
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>emb|AL354993.24| Human DNA sequence from clone RP5-823G15 on chromosome 20q13.2-13.3
             Contains the PPIAL2 gene for peptidylprolyl isomerase A
             (cyclophilin A)-like 2 (pseudogene) and the 3' end of the
             gene for a novel protein (FLJ33887), complete sequence
          Length = 106736

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   cctctttcttcttctccatt 520
             ||||||||||||||||||||
Sbjct: 21311 cctctttcttcttctccatt 21292
to top
>emb|AL136307.12| Human DNA sequence from clone RP3-380B8 on chromosome 6p24.1-25.3
              Contains a gene for the protein Neuritin, a Pyruvate kinase
              (PKM2) pseudogene, a putative novel gene and 4 CpG islands,
              complete sequence
          Length = 186882

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 500    ccctctttcttcttctccat 519
              ||||||||||||||||||||
Sbjct: 112573 ccctctttcttcttctccat 112592
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>emb|CR536620.6| Zebrafish DNA sequence from clone CH211-235C15 in linkage group 16,
             complete sequence
          Length = 57729

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    aaagggtatgtccagagatgcaaa 107
             |||||| |||||||||||||||||
Sbjct: 31947 aaagggcatgtccagagatgcaaa 31970
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>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete
            sequence
          Length = 227880

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   gaacacagcaaagaacagca 84
            ||||||||||||||||||||
Sbjct: 5506 gaacacagcaaagaacagca 5525
to top
>emb|AL049659.2|ATT29H11 Arabidopsis thaliana DNA chromosome 3, BAC clone T29H11
          Length = 97488

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   ttcttcttctccattgccat 525
             ||||||||||||||||||||
Sbjct: 55691 ttcttcttctccattgccat 55672
to top
>gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromosome 17, complete
             sequence
          Length = 170313

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 110   tctagacatgagccaccaccacaa 133
             |||||||||||| |||||||||||
Sbjct: 23192 tctagacatgagacaccaccacaa 23169
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>gb|AC144537.16| Glycine max clone gmw1-42i18, complete sequence
          Length = 113397

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   cctctttcttcttctccatt 520
             ||||||||||||||||||||
Sbjct: 35702 cctctttcttcttctccatt 35721
to top
>gb|AY074567.1| Arabidopsis thaliana AT3g48390/T29H11_90 mRNA, complete cds
          Length = 2183

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  ttcttcttctccattgccat 525
            ||||||||||||||||||||
Sbjct: 1848 ttcttcttctccattgccat 1829
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>gb|AC015463.7| Homo sapiens, clone RP11-114I9, complete sequence
          Length = 40870

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   agatgcaaagatctagacat 118
            ||||||||||||||||||||
Sbjct: 4038 agatgcaaagatctagacat 4019
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>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    tctagacatgagccaccaccacaa 133
              |||||||||||| |||||||||||
Sbjct: 140389 tctagacatgagacaccaccacaa 140412
to top
>gb|AC011966.7|AC011966 Homo sapiens chromosome 15, clone RP11-285I14, complete sequence
          Length = 167862

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    agatgcaaagatctagacat 118
             ||||||||||||||||||||
Sbjct: 16507 agatgcaaagatctagacat 16526
to top
>gb|AC107028.5| Homo sapiens 3 BAC RP11-547K2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126716

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   accacaagcaagcaagaggg 146
             ||||||||||||||||||||
Sbjct: 45379 accacaagcaagcaagaggg 45398
to top
>gb|AC079922.5| Homo sapiens BAC clone RP11-368A17 from 2, complete sequence
          Length = 140678

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   agacatgagccaccaccaca 132
             ||||||||||||||||||||
Sbjct: 33294 agacatgagccaccaccaca 33313
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>gb|AC112230.5| Homo sapiens BAC clone RP11-85D18 from 2, complete sequence
          Length = 196480

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    agacatgagccaccaccaca 132
              ||||||||||||||||||||
Sbjct: 117454 agacatgagccaccaccaca 117473
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>gb|BT002208.1| Arabidopsis thaliana At3g48390/T29H11_90 mRNA, complete cds
          Length = 1902

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  ttcttcttctccattgccat 525
            ||||||||||||||||||||
Sbjct: 1691 ttcttcttctccattgccat 1672
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>gb|AC121548.17| Mus musculus chromosome 5, clone RP24-86E4, complete sequence
          Length = 154340

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 493   aagcgtgccctctttcttcttctc 516
             |||||| |||||||||||||||||
Sbjct: 40917 aagcgtaccctctttcttcttctc 40894


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,664,975
Number of Sequences: 3902068
Number of extensions: 4664975
Number of successful extensions: 100394
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100232
Number of HSP's gapped (non-prelim): 162
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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