| Clone Name | rbags35p21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 mRNA for high mobility group box protein 2, complete cds Length = 634 Score = 295 bits (149), Expect = 1e-76 Identities = 277/319 (86%), Gaps = 3/319 (0%) Strand = Plus / Minus Query: 354 ctctccttgttctcgaagctggctttggtcttctcatagtcctgcttcttctgtccagcc 413 |||||||| || |||||| |||| ||||||||||| |||||||||||||| || |||||| Sbjct: 439 ctctccttcttatcgaagttggccttggtcttctcgtagtcctgcttcttttggccagcc 380 Query: 414 ttctccacataaggtgctttgtcctcatcagacatagatctccacttctcacctgcagcc 473 || |||||||||||||| || || | |||||||||| || ||||||||| ||||||||| Sbjct: 379 ttgtccacataaggtgccttctcttgctcagacatagctcgccacttctcccctgcagcc 320 Query: 474 ttgctcacgttggcgacattcttgttgttggggttctccgcgttgtactgctgcctgaag 533 ||||||||| ||||||| |||||||| || | | | || | ||||| ||||||||| Sbjct: 319 ttgctcacggcggcgacactcttgttgccaggatgcgctgcctggtactcctgcctgaac 260 Query: 534 tcagacatgaagacgaagaaggcggagggcgggcgcttgggcttgccagcggcagcggcg 593 |||||||||||||||||||| || || ||||||||||| |||||||| | ||||||| Sbjct: 259 tcagacatgaagacgaagaaagcagacggcgggcgcttcggcttgcc---gctagcggcg 203 Query: 594 gccttcttcctcttgctggcgccgccggcggccttgagcctgccctcgcccttcttggag 653 |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 gccttcttccgcttcccggcgccgccggcggccttgagcctgccctcgcccttcttggag 143 Query: 654 gcgtcggccttgcccttca 672 ||||||||||||||||||| Sbjct: 142 gcgtcggccttgcccttca 124 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 234 ggatacactatttactcatcgtcgtcttcattatcctcatcgctacc 280 ||||||||||||||||| || ||||| ||||| |||||||||||||| Sbjct: 571 ggatacactatttactcttcatcgtcctcattttcctcatcgctacc 525
>emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein Length = 784 Score = 178 bits (90), Expect = 2e-41 Identities = 287/352 (81%), Gaps = 3/352 (0%) Strand = Plus / Minus Query: 321 tcatcctgagtcttggccttcttggagctcacactctccttgttctcgaagctggctttg 380 ||||||| |||||| |||||||| ||||| |||||||| || || ||| | || || Sbjct: 438 tcatcctcagtcttagccttctttgagcttgtgctctccttcttatcaaagtttgcctta 379 Query: 381 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 440 |||||||||||||||||||||||||||||||| | |||||||| ||| || || | | Sbjct: 378 gtcttctcatagtcctgcttcttctgtccagcttggtccacatatggttgcttctcttga 319 Query: 441 tcagacatagatctccacttctcacctgcagccttgctcacgttggcgacattcttgttg 500 || ||||||| | |||||| || ||||| |||||||||||| | || || |||||||| Sbjct: 318 tctgacatagcacgccacttttcccctgctgccttgctcacggtcgcaacgctcttgttg 259 Query: 501 ttggggttctccgcgttgtactgctgcctgaagtcagacatgaagacgaagaaggcggag 560 |||| | ||| | |||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 258 ccagggtgcagcgcctgatactcctgcctgaattcagacatgaagacgaagaaggcggag 199 Query: 561 ggcgggcgcttgggcttgccagcggcagcggcggccttcttcctcttgctggcgccgccg 620 ||||||||||||||||||| || |||||||||||||| | ||| | |||| ||||| Sbjct: 198 ggcgggcgcttgggcttgc---cgctcgcggcggccttcttgcgctttccggcggcgccg 142 Query: 621 gcggccttgagcctgccctcgcccttcttggaggcgtcggccttgcccttca 672 | ||| ||||||||||||| |||||||||||| ||| ||||||||||||| Sbjct: 141 cccgcccggagcctgccctcgtccttcttggaggtgtcagccttgcccttca 90
>gb|AF440222.1| Zea mays cultivar B73 HMG-like nucleosome/chromatin assembly factor D (nfd104) mRNA, complete cds Length = 795 Score = 170 bits (86), Expect = 4e-39 Identities = 286/352 (81%), Gaps = 3/352 (0%) Strand = Plus / Minus Query: 321 tcatcctgagtcttggccttcttggagctcacactctccttgttctcgaagctggctttg 380 ||||||| |||||| |||||||| ||||| |||||||| || || ||| | || || Sbjct: 441 tcatcctcagtcttagccttctttgagcttgtgctctccttcttatcaaagtttgcctta 382 Query: 381 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 440 |||||||||||||||||||||||||||||||| | |||||||| ||| || || | | Sbjct: 381 gtcttctcatagtcctgcttcttctgtccagcttggtccacatatggttgcttctcttga 322 Query: 441 tcagacatagatctccacttctcacctgcagccttgctcacgttggcgacattcttgttg 500 || ||||||| | |||||| || ||||| |||||||||||| | || || |||||||| Sbjct: 321 tctgacatagcacgccacttttcccctgctgccttgctcacggtcgcaacgctcttgttg 262 Query: 501 ttggggttctccgcgttgtactgctgcctgaagtcagacatgaagacgaagaaggcggag 560 |||| | ||| | |||| ||||||||| |||||||||||| |||||||||||||| Sbjct: 261 ccagggtgcagcgcctgatactcctgcctgaattcagacatgaaggcgaagaaggcggag 202 Query: 561 ggcgggcgcttgggcttgccagcggcagcggcggccttcttcctcttgctggcgccgccg 620 ||||||||||||||||||| || |||||||||||||| | ||| | |||| ||||| Sbjct: 201 ggcgggcgcttgggcttgc---cgctcgcggcggccttcttgcgctttccggcggcgccg 145 Query: 621 gcggccttgagcctgccctcgcccttcttggaggcgtcggccttgcccttca 672 | ||| ||||||||||||| |||||||||||| ||| ||||||||||||| Sbjct: 144 cccgcccggagcctgccctcgtccttcttggaggtgtcagccttgcccttca 93
>emb|Y08298.1|ZMHMGC2 Z.mays mRNA for HMGc2 protein Length = 828 Score = 149 bits (75), Expect = 1e-32 Identities = 241/295 (81%), Gaps = 6/295 (2%) Strand = Plus / Minus Query: 381 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 440 |||||||||||||||||||||||||| ||||| | |||||||| ||| || || | Sbjct: 293 gtcttctcatagtcctgcttcttctgcccagcttggtccacatagggttgcttctcttgc 234 Query: 441 tcagacatagatctccacttctcacctgcagccttgctcacgttggcgacattcttgttg 500 || |||||||| | |||||| || ||||| |||||||||||| || || |||||||| Sbjct: 233 tctgacatagagcgccacttttcccctgctgccttgctcacggccgcaacgctcttgttg 174 Query: 501 ttggggttctccgcgttgtactgctgcctgaagtcagacatgaagacgaagaaggcggag 560 |||| || ||| | ||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 173 ccagggtgctgcgcctggtactcctgcctgaattcagacatgaagacgaagaaggcggag 114 Query: 561 ggcgggcgcttgggcttgccagcggcagcggcggccttcttcctcttgctgg---cgccg 617 || |||||||||||||||| || |||||||||||||| | ||| | || ||||| Sbjct: 113 ggagggcgcttgggcttgc---cgctcgcggcggccttcttgcgctttccggcgccgccg 57 Query: 618 ccggcggccttgagcctgccctcgcccttcttggaggcgtcggccttgcccttca 672 ||| ||||| ||||||| |||| ||||||||||||||| |||||||||||||| Sbjct: 56 ccgccggcccggagcctggcctcatccttcttggaggcgttggccttgcccttca 2
>gb|BT016444.1| Zea mays clone Contig277 mRNA sequence Length = 1158 Score = 103 bits (52), Expect = 7e-19 Identities = 140/168 (83%), Gaps = 6/168 (3%) Strand = Plus / Minus Query: 493 tcttgttgttggggttctccgcgttgtactgctgcctgaagtcagacatgaagacgaaga 552 |||||||| | |||| || ||| | ||||| ||||||||| ||||||||||||||||||| Sbjct: 166 tcttgttgctagggtgctgcgcctggtactcctgcctgaattcagacatgaagacgaaga 107 Query: 553 aggcggagggcgggcgcttgggcttgccagcggcagcggcggccttcttcctcttgctgg 612 |||||||||| ||||||||||||||||| | |||||||||||||| ||| | || Sbjct: 106 aggcggagggagggcgcttgggcttgcc---gctcgcggcggccttcttgagctttccgg 50 Query: 613 cgccgccggcg---gccttgagcctgccctcgcccttcttggaggcgt 657 |||||||| || ||| |||||||||||| ||||||||||||||| Sbjct: 49 cgccgccgccgccggcccggagcctgccctcatccttcttggaggcgt 2 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 381 gtcttctcatagtcctgcttcttctgtccagccttctccacataaggtgctttgtcctca 440 |||||||||||||||||||||||||| ||||| | |||||||| ||| || || | Sbjct: 366 gtcttctcatagtcctgcttcttctgcccagcttggtccacatagggttgcttctcttgc 307 Query: 441 tcagacatagatctccacttctcacctgcagccttgctcac 481 || |||||||| | |||||| || ||||| ||||||||||| Sbjct: 306 tctgacatagagcgccacttttcccctgctgccttgctcac 266
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 7e-16 Identities = 85/97 (87%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 538 acatgaagacgaagaaggcggagggcgggcgcttgggcttgccagcggcagcggcggcct 597 |||||||||||||||| || || ||||||||||| |||||||| | ||||||||||| Sbjct: 27244159 acatgaagacgaagaaagcagacggcgggcgcttcggcttgcc---gctagcggcggcct 27244103 Query: 598 tcttcctcttgctggcgccgccggcggccttgagcct 634 |||||| ||| | |||||||||||||||||||||||| Sbjct: 27244102 tcttccgcttcccggcgccgccggcggccttgagcct 27244066 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 366 tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 425 |||||| |||| ||||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct: 27244848 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 27244789 Query: 426 ggtgc 430 ||||| Sbjct: 27244788 ggtgc 27244784 Score = 81.8 bits (41), Expect = 3e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 632 cctgccctcgcccttcttggaggcgtcggccttgcccttca 672 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 27243939 cctgccctcgcccttcttggaggcgtcggccttgcccttca 27243899 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 441 tcagacatagatctccacttctcacctgcagccttgctcac 481 |||||||||| || ||||||||| ||||||||||||||||| Sbjct: 27244481 tcagacatagctcgccacttctcccctgcagccttgctcac 27244441 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 234 ggatacactatttactcatcgtcgtcttcattatcct 270 ||||||||||||||||| || ||||| ||||| |||| Sbjct: 27245184 ggatacactatttactcttcatcgtcctcattttcct 27245148 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 4135370 ggcgccgccggcggccttga 4135351
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 93.7 bits (47), Expect = 7e-16 Identities = 85/97 (87%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 538 acatgaagacgaagaaggcggagggcgggcgcttgggcttgccagcggcagcggcggcct 597 |||||||||||||||| || || ||||||||||| |||||||| | ||||||||||| Sbjct: 140608 acatgaagacgaagaaagcagacggcgggcgcttcggcttgcc---gctagcggcggcct 140552 Query: 598 tcttcctcttgctggcgccgccggcggccttgagcct 634 |||||| ||| | |||||||||||||||||||||||| Sbjct: 140551 tcttccgcttcccggcgccgccggcggccttgagcct 140515 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 366 tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 425 |||||| |||| ||||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct: 141297 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 141238 Query: 426 ggtgc 430 ||||| Sbjct: 141237 ggtgc 141233 Score = 81.8 bits (41), Expect = 3e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 632 cctgccctcgcccttcttggaggcgtcggccttgcccttca 672 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 140388 cctgccctcgcccttcttggaggcgtcggccttgcccttca 140348 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 441 tcagacatagatctccacttctcacctgcagccttgctcac 481 |||||||||| || ||||||||| ||||||||||||||||| Sbjct: 140930 tcagacatagctcgccacttctcccctgcagccttgctcac 140890 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 234 ggatacactatttactcatcgtcgtcttcattatcct 270 ||||||||||||||||| || ||||| ||||| |||| Sbjct: 141633 ggatacactatttactcttcatcgtcctcattttcct 141597
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 93.7 bits (47), Expect = 7e-16 Identities = 85/97 (87%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 538 acatgaagacgaagaaggcggagggcgggcgcttgggcttgccagcggcagcggcggcct 597 |||||||||||||||| || || ||||||||||| |||||||| | ||||||||||| Sbjct: 94830 acatgaagacgaagaaagcagacggcgggcgcttcggcttgcc---gctagcggcggcct 94774 Query: 598 tcttcctcttgctggcgccgccggcggccttgagcct 634 |||||| ||| | |||||||||||||||||||||||| Sbjct: 94773 tcttccgcttcccggcgccgccggcggccttgagcct 94737 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 366 tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 425 |||||| |||| ||||||||||| |||||||||||||| || |||||||| ||||||||| Sbjct: 95519 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 95460 Query: 426 ggtgc 430 ||||| Sbjct: 95459 ggtgc 95455 Score = 81.8 bits (41), Expect = 3e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 632 cctgccctcgcccttcttggaggcgtcggccttgcccttca 672 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 94610 cctgccctcgcccttcttggaggcgtcggccttgcccttca 94570 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 441 tcagacatagatctccacttctcacctgcagccttgctcac 481 |||||||||| || ||||||||| ||||||||||||||||| Sbjct: 95152 tcagacatagctcgccacttctcccctgcagccttgctcac 95112 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 234 ggatacactatttactcatcgtcgtcttcattatcct 270 ||||||||||||||||| || ||||| ||||| |||| Sbjct: 95855 ggatacactatttactcttcatcgtcctcattttcct 95819
>emb|AJ131374.1|ZMA131374 Zea mays hmgc1 gene, exons 1-7 Length = 2929 Score = 85.7 bits (43), Expect = 2e-13 Identities = 43/43 (100%) Strand = Plus / Minus Query: 538 acatgaagacgaagaaggcggagggcgggcgcttgggcttgcc 580 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1423 acatgaagacgaagaaggcggagggcgggcgcttgggcttgcc 1381 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 381 gtcttctcatagtcctgcttcttctgtccagc 412 |||||||||||||||||||||||||||||||| Sbjct: 2102 gtcttctcatagtcctgcttcttctgtccagc 2071 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 632 cctgccctcgcccttcttggaggcgtcggccttgcccttca 672 |||||||||| |||||||||||| ||| ||||||||||||| Sbjct: 1221 cctgccctcgtccttcttggaggtgtcagccttgcccttca 1181 Score = 40.1 bits (20), Expect = 9.2 Identities = 38/43 (88%), Gaps = 2/43 (4%) Strand = Plus / Minus Query: 216 atttgctacctcgtg--cttggatacactatttactcatcgtc 256 ||||||||||||||| |||||| ||| | ||||||||||||| Sbjct: 2455 atttgctacctcgtgaccttggagacagtgtttactcatcgtc 2413
>gb|AF527617.1| Zea mays nucleasome/chromatin assembly factor D protein NFD106 (nfd106) mRNA, complete cds Length = 625 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 539 catgaagacgaagaaggcggagggcgggcgcttgggcttg 578 |||||||| ||||||||||| ||||| ||||||| ||||| Sbjct: 153 catgaagaggaagaaggcggtgggcgagcgcttgcgcttg 114
>emb|Z11540.1|TAHMGW T.aestivum mRNA for high mobility group protein (HMGW) Length = 923 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 539 catgaagacgaagaaggcggagggcgggcgcttgggcttg 578 ||||||||||||||||||||| |||| | |||||||||| Sbjct: 235 catgaagacgaagaaggcggatggcgccctcttgggcttg 196
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Minus Query: 587 agcggcggccttcttcctcttgctggcgccgccggcggccttgagcct 634 |||||| |||||||||| ||| || | ||||||||| ||||||||||| Sbjct: 103931 agcggcagccttcttccgcttcctagagccgccggcagccttgagcct 103884
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence Length = 150305 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 587 agcggcggccttcttcctcttgctggcgccgccggcggccttgagcct 634 |||||| |||||||||| ||| || | ||||||||| ||||||||||| Sbjct: 141279 agcggcagccttcttccgcttcctagagccgccggcagccttgagcct 141326
>gb|AF440223.1|AF440223 Zea mays cultivar Ohio43 HMG type nucleosome/chromatin assembly factor D (nfd106) mRNA, complete cds Length = 655 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 539 catgaagacgaagaaggcggagggcgggcgcttgggcttg 578 |||||||| ||||||||||| ||||| ||||||| ||||| Sbjct: 155 catgaagaggaagaaggcggtgggcgagcgcttgcgcttg 116
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.038 Identities = 42/48 (87%) Strand = Plus / Plus Query: 587 agcggcggccttcttcctcttgctggcgccgccggcggccttgagcct 634 |||||| |||||||||| ||| || | ||||||||| ||||||||||| Sbjct: 4513547 agcggcagccttcttccgcttcctagagccgccggcagccttgagcct 4513594
>gb|AY108096.1| Zea mays PCO136722 mRNA sequence Length = 882 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 539 catgaagacgaagaaggcggagggcgggcgcttgggcttg 578 |||||||| ||||||||||| ||||| ||||||| ||||| Sbjct: 369 catgaagaggaagaaggcggtgggcgagcgcttgcgcttg 330
>emb|AJ006708.1|ZMA6708 Zea mays HMGe gene Length = 684 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 435 tcctcatcagacatagatctccacttctcacctgcagccttgctcac 481 |||||||| |||||||| | ||||||||| || || ||||||||||| Sbjct: 252 tcctcatccgacatagagcgccacttctccccagccgccttgctcac 206
>gb|AY105190.1| Zea mays PCO097256 mRNA sequence Length = 879 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 435 tcctcatcagacatagatctccacttctcacctgcagccttgctcac 481 |||||||| |||||||| | ||||||||| || || ||||||||||| Sbjct: 323 tcctcatccgacatagagcgccacttctccccagccgccttgctcac 277
>ref|XM_460929.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F14135g) partial mRNA Length = 1953 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 249 tcatcgtcgtcttcattatcctcatc 274 ||||||||||||||||||| |||||| Sbjct: 167 tcatcgtcgtcttcattattctcatc 142
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 249 tcatcgtcgtcttcattatcctcatc 274 ||||||||||||||||||| |||||| Sbjct: 1131943 tcatcgtcgtcttcattattctcatc 1131918
>dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-651F18, complete sequence Length = 117898 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 cccaactcccaatttgctacct 226 |||||||||||||||||||||| Sbjct: 29673 cccaactcccaatttgctacct 29694
>emb|AL844845.7| Mouse DNA sequence from clone RP23-155C1 on chromosome 2, complete sequence Length = 112100 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 568 gcttgggcttgccagcggcagc 589 |||||||||||||||||||||| Sbjct: 41244 gcttgggcttgccagcggcagc 41265
>gb|AC140351.2| Mus musculus BAC clone RP24-258E8 from chromosome 8, complete sequence Length = 167073 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 106912 tcctcttgctggagccgccggcggc 106888
>gb|BC010197.1| Mus musculus carboxypeptidase E, mRNA (cDNA clone MGC:7101 IMAGE:3157558), complete cds Length = 2130 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 231 tcctcttgctggagccgccggcggc 207
>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence Length = 209081 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 tttggtcttctcatagtcctg 397 ||||||||||||||||||||| Sbjct: 52318 tttggtcttctcatagtcctg 52298
>ref|XM_976304.1| PREDICTED: Mus musculus carboxypeptidase E (Cpe), mRNA Length = 1306 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 300 tcctcttgctggagccgccggcggc 276
>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence Length = 200339 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 tttggtcttctcatagtcctg 397 ||||||||||||||||||||| Sbjct: 95345 tttggtcttctcatagtcctg 95325
>ref|NM_013494.2| Mus musculus carboxypeptidase E (Cpe), mRNA Length = 2130 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 231 tcctcttgctggagccgccggcggc 207
>emb|Z98743.1|HS181C9 Human DNA sequence from clone RP1-181C9 on chromosome 22q13.2-13.33, complete sequence Length = 92472 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 554 ggcggagggcgggcgcttgggcttg 578 ||||| ||||||||||||||||||| Sbjct: 70999 ggcggggggcgggcgcttgggcttg 71023
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 610 tggcgccgccggcggccttga 630 ||||||||||||||||||||| Sbjct: 89732 tggcgccgccggcggccttga 89712
>emb|X61232.1|MMCBXPEPH Mouse mRNA for carboxypeptidase H Length = 1992 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 179 tcctcttgctggagccgccggcggc 155
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 cctcctcatcatcctgagtct 333 ||||||||||||||||||||| Sbjct: 2969609 cctcctcatcatcctgagtct 2969629
>dbj|AK160097.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420048N13 product:carboxypeptidase E, full insert sequence Length = 2101 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 246 tcctcttgctggagccgccggcggc 222
>dbj|AK047891.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130020F14 product:carboxypeptidase E, full insert sequence Length = 2078 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 222 tcctcttgctggagccgccggcggc 198
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 gcagcggcggccttcttcctc 605 ||||||||||||||||||||| Sbjct: 23173917 gcagcggcggccttcttcctc 23173937
>gb|AF312033.1|AF312033 Mus musculus acetylcholinesterase (Ache) and D5Ertd655e genes, complete cds; ASR2 (Asr2) gene, complete cds, alternatively spliced; TRIP6 (Trip6), CIP1 (Cip1), EPHB4 (Ephb4), ZAN (Zan), EPO (Epo), RPP20 (Rpp20), PERQ1 (Perq1), GNB2 (Gnb2), and BAF53B (Baf53b) genes, complete cds; and TFR2 (Tfr2) gene, partial cds Length = 296820 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 atctccacttctcacctgcag 471 ||||||||||||||||||||| Sbjct: 32836 atctccacttctcacctgcag 32856
>emb|AL592214.14| Mouse DNA sequence from clone RP23-212I24 on chromosome 1, complete sequence Length = 194720 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 320 atcatcctgagtcttggccttcttg 344 ||||||||||||||||| ||||||| Sbjct: 187116 atcatcctgagtcttggtcttcttg 187140
>gb|AC005104.1| Homo sapiens BAC clone CTA-442F18 from 2, complete sequence Length = 134911 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 ccttgagcctgccctcgcccttctt 649 ||||||||||||||||| ||||||| Sbjct: 67730 ccttgagcctgccctcggccttctt 67754
>gb|AC152168.2| Mus musculus BAC clone RP23-96H18 from chromosome 8, complete sequence Length = 219434 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 85086 tcctcttgctggagccgccggcggc 85062
>dbj|AK209525.1| Mus musculus cDNA, clone:Y2G0115G07, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000048967, based on BLAT search Length = 185 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 87 tcctcttgctggagccgccggcggc 63
>emb|AJ337604.1|HSA337604 Homo sapiens genomic sequence surrounding NotI site, clone NL6-LA18C Length = 685 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 554 ggcggagggcgggcgcttgggcttg 578 ||||| ||||||||||||||||||| Sbjct: 145 ggcggggggcgggcgcttgggcttg 121
>emb|AJ337239.1|HSA337239 Homo sapiens genomic sequence surrounding NotI site, clone NR1-RL11R Length = 757 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 554 ggcggagggcgggcgcttgggcttg 578 ||||| ||||||||||||||||||| Sbjct: 145 ggcggggggcgggcgcttgggcttg 121
>emb|AJ337191.1|HSA337191 Homo sapiens genomic sequence surrounding NotI site, clone NR1-DJ9R Length = 730 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 554 ggcggagggcgggcgcttgggcttg 578 ||||| ||||||||||||||||||| Sbjct: 145 ggcggggggcgggcgcttgggcttg 121
>emb|AJ337085.1|HSA337085 Homo sapiens genomic sequence surrounding NotI site, clone NR1-BN3R Length = 720 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 554 ggcggagggcgggcgcttgggcttg 578 ||||| ||||||||||||||||||| Sbjct: 145 ggcggggggcgggcgcttgggcttg 121
>gb|U23184.1|MMU23184 Mus musculus musculus carboxypeptidase E (Cpe) mRNA, complete cds Length = 1547 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 tcctcttgctggcgccgccggcggc 625 |||||||||||| |||||||||||| Sbjct: 140 tcctcttgctggagccgccggcggc 116
>gb|AF095748.1|AF095748 Burkholderia cepacia principal sigma factor (sigA), phthalate dioxygenase reductase (ophA1), putative phthalate permease N-terminal region, putative phathalate permease C-terminal region (ophD), 4,5-dihydroxyphthalate decarboxylase (ophC), phthalate-inducible quinolinate phosphoribosyl transferase (ophE), transposase (tnp), phthalate dihydrodiol dehydrogenase (ophB), and phthalate dioxygenase (ophA2) genes, complete cds; and unknown gene Length = 13610 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 617 gccggcggccttgagcctgccctcg 641 ||||||||||||||||||| ||||| Sbjct: 10478 gccggcggccttgagcctggcctcg 10502
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 gcagcggcggccttcttcctc 605 ||||||||||||||||||||| Sbjct: 23102108 gcagcggcggccttcttcctc 23102128
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 gcagcggcggccttcttcctc 605 ||||||||||||||||||||| Sbjct: 4480 gcagcggcggccttcttcctc 4460
>gb|AC150682.2| Mus musculus BAC clone RP24-210N1 from 5, complete sequence Length = 164951 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 atctccacttctcacctgcag 471 ||||||||||||||||||||| Sbjct: 41489 atctccacttctcacctgcag 41509
>emb|AJ343462.1|HSA343462 Homo sapiens genomic sequence surrounding NotI site, clone NR1-CG4R Length = 741 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 554 ggcggagggcgggcgcttgggcttg 578 ||||| ||||||||||||||||||| Sbjct: 145 ggcggggggcgggcgcttgggcttg 121
>ref|XM_637534.1| Dictyostelium discoideum hypothetical protein (DDB0169229), partial mRNA Length = 2085 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 attcttgttgttggggttct 510 |||||||||||||||||||| Sbjct: 283 attcttgttgttggggttct 264
>ref|XM_468609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 694 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 453 ggcgccgccggcggccttga 434
>ref|XM_479144.1| Oryza sativa (japonica cultivar-group), mRNA Length = 441 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 423 ggcgccgccggcggccttga 404
>ref|XM_365427.1| Magnaporthe grisea 70-15 hypothetical protein (MG02129.4) partial mRNA Length = 2598 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 atcgtcgtcttcattatcctcatc 274 |||||||||||||| ||||||||| Sbjct: 1293 atcgtcgtcttcatcatcctcatc 1270
>ref|XM_677334.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9157.2), mRNA Length = 1887 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 gcggcagcggcggccttctt 601 |||||||||||||||||||| Sbjct: 125 gcggcagcggcggccttctt 106
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 16599922 ggcgccgccggcggccttga 16599903
>gb|AC159708.13| Mus musculus 10 BAC RP23-110M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 238622 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 acttctcacctgcagccttg 476 |||||||||||||||||||| Sbjct: 65984 acttctcacctgcagccttg 65965
>gb|AY282923.1| Strongylocentrotus purpuratus polycystic kidney disease protein 2 (PKD2) mRNA, complete cds Length = 3539 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 ctcatcgtcgtcttcattatcctcatcg 275 |||||||||||| |||| |||||||||| Sbjct: 2495 ctcatcgtcgtcatcatcatcctcatcg 2468
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence Length = 183648 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 attcttgttgttggggttct 510 |||||||||||||||||||| Sbjct: 94231 attcttgttgttggggttct 94212
>ref|XR_003508.1| PREDICTED: Mus musculus similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC637620), mRNA Length = 1184 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 acttctcacctgcagccttg 476 |||||||||||||||||||| Sbjct: 1116 acttctcacctgcagccttg 1097
>ref|XR_001977.1| PREDICTED: Mus musculus similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC637620), mRNA Length = 1184 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 acttctcacctgcagccttg 476 |||||||||||||||||||| Sbjct: 1116 acttctcacctgcagccttg 1097
>gb|AC121353.2| Rattus norvegicus chromosome 1 clone RP32-274I11 map q34, complete sequence Length = 142440 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 acttctcacctgcagccttg 476 |||||||||||||||||||| Sbjct: 525 acttctcacctgcagccttg 544
>gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238254 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aagtcagacatgaagacgaa 550 |||||||||||||||||||| Sbjct: 195576 aagtcagacatgaagacgaa 195595
>ref|XM_751756.1| Ustilago maydis 521 hypothetical protein (UM00702.1) partial mRNA Length = 5868 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 249 tcatcgtcgtcttcattatcctcatcgc 276 |||||||||||||||| ||| ||||||| Sbjct: 1544 tcatcgtcgtcttcatcatcatcatcgc 1517
>gb|AC115117.5| Mus musculus BAC clone RP23-76J12 from chromosome 18, complete sequence Length = 197626 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcaacttctcaaaccatgag 94 |||||||||||||||||||| Sbjct: 122483 gcaacttctcaaaccatgag 122502
>emb|AJ890015.1| Triticum aestivum partial mRNA for putative high mobility group protein (hmg1 gene), cultivar Wyuna, from endosperm tissue Length = 638 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gtcttggccttcttggagct 349 |||||||||||||||||||| Sbjct: 296 gtcttggccttcttggagct 277
>gb|AC161825.13| Mus musculus 10 BAC RP23-35O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199841 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 acttctcacctgcagccttg 476 |||||||||||||||||||| Sbjct: 72957 acttctcacctgcagccttg 72976
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 608 gctggcgccgccggcggccttgag 631 |||| ||||||||||||||||||| Sbjct: 3406098 gctgacgccgccggcggccttgag 3406121
>gb|U70480.1|LEU70480 Lycopersicon esculentum abscission polygalacturonase (TAPG2) mRNA complete cds Length = 1277 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 attcttgttgttggggttct 510 |||||||||||||||||||| Sbjct: 478 attcttgttgttggggttct 459
>ref|XM_785429.1| PREDICTED: Strongylocentrotus purpuratus similar to CG2839-PA (LOC585610), mRNA Length = 3282 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 tcgtcttcattatcctcatc 274 |||||||||||||||||||| Sbjct: 827 tcgtcttcattatcctcatc 808
>emb|Z50799.1|HVHHMG12 H.vulgare mRNA for HMG1/2-like protein Length = 974 Score = 40.1 bits (20), Expect = 9.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 539 catgaagacgaagaaggcggagggcgggcgcttgggcttg 578 ||||||||||||||||||| ||||| | |||||||||| Sbjct: 247 catgaagacgaagaaggcgctgggcgccctcttgggcttg 208
>ref|XM_781060.1| PREDICTED: Strongylocentrotus purpuratus similar to neuralized, possibly N-myristoylated (XR998) (LOC581036), mRNA Length = 897 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 ctcatcgtcgtcttcattat 267 |||||||||||||||||||| Sbjct: 654 ctcatcgtcgtcttcattat 673
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 ttggcgacattcttgttgtt 502 |||||||||||||||||||| Sbjct: 62426 ttggcgacattcttgttgtt 62407
>gb|AY082396.1| Zea mays knotted1-interacting protein (kip) mRNA, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gcctcctcatcatcctgagtcttg 335 ||||||||||| |||||||||||| Sbjct: 1193 gcctcctcatcctcctgagtcttg 1216
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 gcggcagcggcggccttctt 601 |||||||||||||||||||| Sbjct: 517825 gcggcagcggcggccttctt 517806
>ref|NM_135461.2| Drosophila melanogaster CG4364-RA (CG4364), mRNA Length = 2123 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tcatcgtcgtcttcattatc 268 |||||||||||||||||||| Sbjct: 1676 tcatcgtcgtcttcattatc 1657
>gb|AY069545.1| Drosophila melanogaster LD27336 full length cDNA Length = 2141 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tcatcgtcgtcttcattatc 268 |||||||||||||||||||| Sbjct: 1676 tcatcgtcgtcttcattatc 1657
>gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, complete sequence Length = 136793 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 agatagcaggatagcaaact 187 |||||||||||||||||||| Sbjct: 118683 agatagcaggatagcaaact 118664
>gb|AC135559.4| Oryza sativa chromosome 3 BAC OSJNBa0030J19 genomic sequence, complete sequence Length = 133843 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 54121 ggcgccgccggcggccttga 54140
>gb|AC018608.9|AC018608 Homo sapiens chromosome 8, clone RP11-403P13, complete sequence Length = 200863 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 catcgtcgtcttcattatcctcat 273 ||||||| |||||||||||||||| Sbjct: 85923 catcgtcatcttcattatcctcat 85946
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 25183393 ggcgccgccggcggccttga 25183412
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 16593555 ggcgccgccggcggccttga 16593536
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 actcatcgtcgtcttcattatcctcatc 274 ||||||||||||| |||| ||||||||| Sbjct: 26739413 actcatcgtcgtcgtcatcatcctcatc 26739440
>gb|AC007291.24|AC007291 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR02I05, complete sequence Length = 176075 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tcatcgtcgtcttcattatc 268 |||||||||||||||||||| Sbjct: 110897 tcatcgtcgtcttcattatc 110878
>gb|AC106742.3| Homo sapiens chromosome 16 clone RP11-1136G4, complete sequence Length = 145009 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 ttgtactgctgcctgaagtc 535 |||||||||||||||||||| Sbjct: 29084 ttgtactgctgcctgaagtc 29065
>ref|NM_214662.1| Strongylocentrotus purpuratus polycystic kidney disease protein 2 (pkd2), mRNA Length = 3539 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 ctcatcgtcgtcttcattatcctcatcg 275 |||||||||||| |||| |||||||||| Sbjct: 2495 ctcatcgtcgtcatcatcatcctcatcg 2468
>gb|AE004606.1| Pseudomonas aeruginosa PAO1, section 167 of 529 of the complete genome Length = 10851 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 646 tcttggaggcgtcggccttg 665 |||||||||||||||||||| Sbjct: 9513 tcttggaggcgtcggccttg 9494
>ref|XM_214456.3| PREDICTED: Rattus norvegicus similar to Alpha enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (LOC291065), mRNA Length = 938 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 acttctcacctgcagccttg 476 |||||||||||||||||||| Sbjct: 643 acttctcacctgcagccttg 624
>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0694A04 Length = 141476 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 actcatcgtcgtcttcattatcctcatc 274 ||||||||||||| |||| ||||||||| Sbjct: 86505 actcatcgtcgtcgtcatcatcctcatc 86532
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 ccagcggcagcggcggcctt 598 |||||||||||||||||||| Sbjct: 6500782 ccagcggcagcggcggcctt 6500763
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 45384 ggcgccgccggcggccttga 45365
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 64 ggcgccgccggcggccttga 83
>dbj|AK121069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061G23, full insert sequence Length = 727 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 472 ggcgccgccggcggccttga 453
>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_H02 Length = 124043 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 ggcgccgccggcggccttga 630 |||||||||||||||||||| Sbjct: 103880 ggcgccgccggcggccttga 103899
>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the complete sequence Length = 264919 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tcatcgtcgtcttcattatc 268 |||||||||||||||||||| Sbjct: 506 tcatcgtcgtcttcattatc 525
>gb|AC167686.2| Daphnia pulex clone JGIAZSN-5K3, complete sequence Length = 36132 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tcttcgacctcagatttgga 304 |||||||||||||||||||| Sbjct: 12661 tcttcgacctcagatttgga 12642
>gb|AF001001.1|AF001001 Lycopersicon esculentum polygalacturonase 2 (TAPG2) gene, complete cds Length = 7991 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 attcttgttgttggggttct 510 |||||||||||||||||||| Sbjct: 2682 attcttgttgttggggttct 2663
>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete sequence Length = 123244 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 gctctctctctgctaataca 67 |||||||||||||||||||| Sbjct: 78063 gctctctctctgctaataca 78082
>emb|Z99967.1|MAZ99967 Musa acuminata mRNA for putative high mobility group protein (clone pBAN EU134) Length = 784 Score = 40.1 bits (20), Expect = 9.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 539 catgaagacgaagaaggcggagggcgggcgcttgggcttg 578 ||||||||||||||||||| ||| || | |||||||||| Sbjct: 213 catgaagacgaagaaggcgctgggaggcctcttgggcttg 174 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,763,807 Number of Sequences: 3902068 Number of extensions: 7763807 Number of successful extensions: 173389 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 172168 Number of HSP's gapped (non-prelim): 1215 length of query: 672 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 649 effective length of database: 17,143,297,704 effective search space: 11126000209896 effective search space used: 11126000209896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)