>MMS2_SCHPO (O74983) Ubiquitin-conjugating enzyme spm2 (Ubiquitin-conjugating|
           enzyme variant MMS2 homolog) (UEV MMS2)
          Length = 139

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = -2

Query: 324 REXXMEHVLXQLKKDMAATQNRKLVQPPEGTFF 226
           RE  ME VL  LKK+MA++ NRKL QPPEG+ F
Sbjct: 106 REYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138

>MMS2_YEAST (P53152) Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2)|
          Length = 137

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 324 REXXMEHVLXQLKKDMAATQNRKLVQPPEGTFF 226
           R   ME +L  L+K+MA   N+KL QP EG  F
Sbjct: 105 RAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137

>VE7_HPV54 (Q81019) Protein E7|
          Length = 95

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -2

Query: 285 KDMAATQNRKLVQPPEGTFFXRSVCWPIXSPVPTAAIYITPMGFEIYIRRLLPADLFPVL 106
           +D  A     + QP +  F   S C  +        +Y T  G  + ++ LL  D   ++
Sbjct: 29  EDSDAEDETAVTQPDKQAFKVLSQCGGVCCKTVRLCVYSTHTGIRV-LQELLHQDALQIV 87

Query: 105 CETCSSR 85
           C TC+SR
Sbjct: 88  CPTCASR 94

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 209 GPSHLQFQQQRSISLPWDLKSTFGVC 132
           GPSH  FQ   ++  PW++ +T   C
Sbjct: 731 GPSHCSFQTTGTLDEPWEVLATQPFC 756

>DCML_OLICA (P19919) Carbon monoxide dehydrogenase large chain (EC 1.2.99.2)|
           (CO dehydrogenase subunit L) (CO-DH L)
          Length = 809

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 15  ISTTKFAKPVHVSFHLLLTAIGRIARNRFHI 107
           +STT FA+  H++  L  T  G+I   R H+
Sbjct: 305 LSTTSFARDYHMTTELAATKDGKILAMRCHV 335

>3MG2_ECOLI (P04395) DNA-3-methyladenine glycosylase 2 (EC 3.2.2.21)|
           (DNA-3-methyladenine glycosylase II)
           (3-methyladenine-DNA glycosylase II, inducible) (TAG II)
           (DNA-3-methyladenine glycosidase II)
          Length = 282

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 63  LLTAIGRIARNRFHIKLGKDLQAADAEC 146
           ++TAI  IAR+  HI L   L+   AEC
Sbjct: 47  VVTAIPDIARHTLHINLSAGLEPVAAEC 74

>DNLJ_MYCTU (P63973) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+])
          Length = 691

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 156 FEIYIRRLLPADLFPVLCETCSSRSARLPLKGDGMKHVPVWRI 28
           F +  R LL  DLF       S+   RL +  D  K  P+WR+
Sbjct: 486 FALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRV 528

>DNLJ_MYCBO (P63974) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+])
          Length = 691

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 156 FEIYIRRLLPADLFPVLCETCSSRSARLPLKGDGMKHVPVWRI 28
           F +  R LL  DLF       S+   RL +  D  K  P+WR+
Sbjct: 486 FALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRV 528

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear|
           factor with BRCT domains 1)
          Length = 2089

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 209 GPSHLQFQQQRSISLPWDLKSTFGVC 132
           GPSH  FQ   ++  PW++ +T   C
Sbjct: 731 GPSHCSFQTTGTLDEPWEVLATQPFC 756

>GP124_HUMAN (Q96PE1) Probable G-protein coupled receptor 124 precursor (Tumor|
           endothelial marker 5)
          Length = 1331

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 105 IKLGKDLQAADAECRFQIPWE*YRSLLLELEMXWA---SRHSXRRMSLLEAALAC 260
           + LG +    D   R+ +PW   RSL L      A   + H+    SL EA L C
Sbjct: 178 VDLGTEFLTCDCHLRWLLPWAQNRSLQLSEHTLCAYPSALHAQALGSLQEAQLCC 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,869,796
Number of Sequences: 219361
Number of extensions: 942349
Number of successful extensions: 2189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2189
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)