ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017181.1| Zea mays clone EL01N0369E04.c mRNA sequence 78 2e-11
2gb|AY104181.1| Zea mays PCO060230 mRNA sequence 78 2e-11
3gb|BT016303.1| Zea mays clone Contig136 mRNA sequence 74 3e-10
4gb|AY103581.1| Zea mays PCO136340 mRNA sequence 74 3e-10
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
6dbj|AK068060.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
8emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa... 72 1e-09
9ref|XM_474414.1| Oryza sativa (japonica cultivar-group), predic... 62 1e-06
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
11dbj|AK066799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
12emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 62 1e-06
13emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 62 1e-06
14gb|DQ455302.1| Medicago truncatula cDNA-AFLP fragment BT12M22_23... 58 2e-05
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
16dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
17dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
18dbj|AK104965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
19dbj|AK073729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
20gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, com... 42 1.1
21gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, co... 42 1.1
22ref|XM_627982.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 1.1
23gb|AC091278.6| Mus musculus chromosome 1, clone RP23-294D6, comp... 40 4.3
24gb|AY303814.1| Takifugu rubripes IFI56 (IFI56) gene, complete cds 40 4.3
25gb|AC157766.4| Mus musculus chromosome 1, clone RP24-318F24, com... 40 4.3
26gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complet... 40 4.3
27gb|AC005279.1|AC005279 Homo sapiens chromosome 17, clone hRPK.10... 40 4.3 
>gb|BT017181.1| Zea mays clone EL01N0369E04.c mRNA sequence
          Length = 822

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 215 acactccgntagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgct 274
           ||||| || ||||||||||||||||||||||||||||||| ||| || ||||| |  || 
Sbjct: 601 acacttcgttagaagaatgtcccttctggaggctgcactaactttcgattctgcgaggca 542

                                 
Query: 275 gccatgtctttcttcagctggg 296
           ||||| |||||||| |||||||
Sbjct: 541 gccatctctttcttgagctggg 520
to top
>gb|AY104181.1| Zea mays PCO060230 mRNA sequence
          Length = 1061

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 215 acactccgntagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgct 274
           ||||| || ||||||||||||||||||||||||||||||| ||| || ||||| |  || 
Sbjct: 720 acacttcgttagaagaatgtcccttctggaggctgcactaactttcgattctgcgaggca 661

                                 
Query: 275 gccatgtctttcttcagctggg 296
           ||||| |||||||| |||||||
Sbjct: 660 gccatctctttcttgagctggg 639
to top
>gb|BT016303.1| Zea mays clone Contig136 mRNA sequence
          Length = 790

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           ||||||||||||||||| |||||||| ||||||||||||||||| | || || ||| |||
Sbjct: 519 tagaagaatgtcccttccggaggctgaactagcttgcggttctgtggcgatgtcatctct 460

                
Query: 284 ttctt 288
           |||||
Sbjct: 459 ttctt 455
to top
>gb|AY103581.1| Zea mays PCO136340 mRNA sequence
          Length = 1242

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           ||||||||||||||||| |||||||| ||||||||||||||||| | || || ||| |||
Sbjct: 605 tagaagaatgtcccttccggaggctgaactagcttgcggttctgtggcgatgtcatctct 546

                
Query: 284 ttctt 288
           |||||
Sbjct: 545 ttctt 541
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 224      tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
                |||||||||||||| ||||||||||||||||| || ||||| || |  |||||||| |||
Sbjct: 25592753 tagaagaatgtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctct 25592812

                                   
Query: 284      ttcttcagctgggncaaga 302
                ||||| || |||| |||||
Sbjct: 25592813 ttcttaagttgggtcaaga 25592831
to top
>dbj|AK068060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130B07, full
           insert sequence
          Length = 924

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           |||||||||||||| ||||||||||||||||| || ||||| || |  |||||||| |||
Sbjct: 641 tagaagaatgtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctct 582

                              
Query: 284 ttcttcagctgggncaaga 302
           ||||| || |||| |||||
Sbjct: 581 ttcttaagttgggtcaaga 563
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 224      tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
                |||||||||||||| ||||||||||||||||| || ||||| || |  |||||||| |||
Sbjct: 25520929 tagaagaatgtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctct 25520988

                                   
Query: 284      ttcttcagctgggncaaga 302
                ||||| || |||| |||||
Sbjct: 25520989 ttcttaagttgggtcaaga 25521007
to top
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127003

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                         
Query: 224   tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
             |||||||||||||| ||||||||||||||||| || ||||| || |  |||||||| |||
Sbjct: 80965 tagaagaatgtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctct 80906

                                
Query: 284   ttcttcagctgggncaaga 302
             ||||| || |||| |||||
Sbjct: 80905 ttcttaagttgggtcaaga 80887
to top
>ref|XM_474414.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 447

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           |||||||| ||||||||||||||||| || ||||||||| | || | ||| ||||| || 
Sbjct: 446 tagaagaaggtcccttctggaggctgaaccagcttgcggctgtgcggcgcggccatctcc 387

                      
Query: 284 ttcttcagctg 294
           |||||||||||
Sbjct: 386 ttcttcagctg 376
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                            
Query: 224      tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
                |||||||| ||||||||||||||||| || ||||||||| | || | ||| ||||| || 
Sbjct: 35012557 tagaagaaggtcccttctggaggctgaaccagcttgcggctgtgcggcgcggccatctcc 35012498

                           
Query: 284      ttcttcagctg 294
                |||||||||||
Sbjct: 35012497 ttcttcagctg 35012487
to top
>dbj|AK066799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077E20, full
           insert sequence
          Length = 813

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           |||||||| ||||||||||||||||| || ||||||||| | || | ||| ||||| || 
Sbjct: 459 tagaagaaggtcccttctggaggctgaaccagcttgcggctgtgcggcgcggccatctcc 400

                      
Query: 284 ttcttcagctg 294
           |||||||||||
Sbjct: 399 ttcttcagctg 389
to top
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                         
Query: 224   tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
             |||||||| ||||||||||||||||| || ||||||||| | || | ||| ||||| || 
Sbjct: 44304 tagaagaaggtcccttctggaggctgaaccagcttgcggctgtgcggcgcggccatctcc 44245

                        
Query: 284   ttcttcagctg 294
             |||||||||||
Sbjct: 44244 ttcttcagctg 44234
to top
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                         
Query: 224   tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
             |||||||| ||||||||||||||||| || ||||||||| | || | ||| ||||| || 
Sbjct: 71607 tagaagaaggtcccttctggaggctgaaccagcttgcggctgtgcggcgcggccatctcc 71548

                        
Query: 284   ttcttcagctg 294
             |||||||||||
Sbjct: 71547 ttcttcagctg 71537
to top
>gb|DQ455302.1| Medicago truncatula cDNA-AFLP fragment BT12M22_236 sequence
          Length = 215

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 236 ccttctggaggctgcactagcttgcggttctgggtcgctgccatgtctttcttcagctgg 295
           |||||||||||||| || ||||| ||||| || |  |||||||| |||||||||||||||
Sbjct: 70  ccttctggaggctggacaagcttccggttatgaggggctgccatttctttcttcagctgg 129

            
Query: 296 g 296
           |
Sbjct: 130 g 130
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                           
Query: 224     tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
               |||||||| |||||||||||||| ||||| | |||||| ||||| |  | |||||| || 
Sbjct: 7151298 tagaagaacgtcccttctggaggttgcaccaacttgcgattctgcggggttgccatctcc 7151357

                            
Query: 284     ttcttcagctggg 296
               ||||| |||||||
Sbjct: 7151358 ttcttgagctggg 7151370
to top
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1381_H04
          Length = 130961

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                        
Query: 224  tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
            |||||||| |||||||||||||| ||||| | |||||| ||||| |  | |||||| || 
Sbjct: 3403 tagaagaacgtcccttctggaggttgcaccaacttgcgattctgcggggttgccatctcc 3462

                         
Query: 284  ttcttcagctggg 296
            ||||| |||||||
Sbjct: 3463 ttcttgagctggg 3475
to top
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0592C05
          Length = 150478

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                          
Query: 224    tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
              |||||||| |||||||||||||| ||||| | |||||| ||||| |  | |||||| || 
Sbjct: 103377 tagaagaacgtcccttctggaggttgcaccaacttgcgattctgcggggttgccatctcc 103436

                           
Query: 284    ttcttcagctggg 296
              ||||| |||||||
Sbjct: 103437 ttcttgagctggg 103449
to top
>dbj|AK104965.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C07, full
           insert sequence
          Length = 833

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           |||||||| |||||||||||||| ||||| | |||||| ||||| |  | |||||| || 
Sbjct: 504 tagaagaacgtcccttctggaggttgcaccaacttgcgattctgcggggttgccatctcc 445

                        
Query: 284 ttcttcagctggg 296
           ||||| |||||||
Sbjct: 444 ttcttgagctggg 432
to top
>dbj|AK073729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054B21, full
           insert sequence
          Length = 853

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 224 tagaagaatgtcccttctggaggctgcactagcttgcggttctgggtcgctgccatgtct 283
           |||||||| |||||||||||||| ||||| | |||||| ||||| |  | |||||| || 
Sbjct: 555 tagaagaacgtcccttctggaggttgcaccaacttgcgattctgcggggttgccatctcc 496

                        
Query: 284 ttcttcagctggg 296
           ||||| |||||||
Sbjct: 495 ttcttgagctggg 483
to top
>gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, complete sequence
          Length = 208067

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 230   aatgtcccttctggaggctgc 250
             |||||||||||||||||||||
Sbjct: 72407 aatgtcccttctggaggctgc 72427
to top
>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   aaagatctgcaggcagcagac 137
             |||||||||||||||||||||
Sbjct: 48275 aaagatctgcaggcagcagac 48295
to top
>ref|XM_627982.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_1400),
            partial mRNA
          Length = 2889

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 93   aacaggtttcacataaaactgggaaaaga 121
            |||| ||||| ||||||||||||||||||
Sbjct: 1408 aacatgtttcgcataaaactgggaaaaga 1380
to top
>gb|AC091278.6| Mus musculus chromosome 1, clone RP23-294D6, complete sequence
          Length = 244656

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    aagatctgcaggcagcagac 137
              ||||||||||||||||||||
Sbjct: 220818 aagatctgcaggcagcagac 220799
to top
>gb|AY303814.1| Takifugu rubripes IFI56 (IFI56) gene, complete cds
          Length = 6404

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 174  agatcgctgctgttggaactggag 197
            ||||||||| ||||||||||||||
Sbjct: 6026 agatcgctgttgttggaactggag 6003
to top
>gb|AC157766.4| Mus musculus chromosome 1, clone RP24-318F24, complete sequence
          Length = 145303

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aagatctgcaggcagcagac 137
              ||||||||||||||||||||
Sbjct: 145053 aagatctgcaggcagcagac 145072
to top
>gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complete sequence
          Length = 166660

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    aaaactgggaaaagatctgc 126
              ||||||||||||||||||||
Sbjct: 154557 aaaactgggaaaagatctgc 154538
to top
>gb|AC005279.1|AC005279 Homo sapiens chromosome 17, clone hRPK.103_M_22, complete sequence
          Length = 151429

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aagatctgcaggcagcagac 137
             ||||||||||||||||||||
Sbjct: 36149 aagatctgcaggcagcagac 36130


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,632,521
Number of Sequences: 3902068
Number of extensions: 2632521
Number of successful extensions: 43716
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43656
Number of HSP's gapped (non-prelim): 60
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top