| Clone Name | rbags36e20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 422 bits (213), Expect = e-115 Identities = 303/330 (91%), Gaps = 14/330 (4%) Strand = Plus / Minus Query: 1 ttcagatcaggcgaggaaggttacctttcgattcgcaaaaatggcaatcctactct---- 56 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1801 ttcagatcaggcgaggaaggttaccgttcgattcgcaaaaatggcaatcctactcttact 1742 Query: 57 --agacctttttcactttcaattgatctcaaccaaaattctactgcttggcctgaactga 114 |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct: 1741 ctagaccttt--cactttcagttgatctcaaccgaaattctactgcttggcctgaactga 1684 Query: 115 agcatctaaaaaacacggacgaggcctgaagag--ctttacag---gctcgatcagacgg 169 |||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||| Sbjct: 1683 ggcatctaaaaaa-acggaggaggcctgaagagagctttacatacagctcgatcagacgg 1625 Query: 170 agagctgcccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacga 229 |||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||| Sbjct: 1624 agagctgcccctccgctggctcggcgaccttgggcttgggcttgggcttctcgacgacga 1565 Query: 230 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 1505 Query: 290 tnaccttggcggggtcgatgacacccnact 319 | |||||||||||||||||||| ||| ||| Sbjct: 1504 tcaccttggcggggtcgatgacgcccgact 1475
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 10296525
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 1671
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 740
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 1669
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 688
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 10296407
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 103 bits (52), Expect = 3e-19 Identities = 99/115 (86%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 59444
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 95.6 bits (48), Expect = 8e-17 Identities = 98/115 (85%) Strand = Plus / Minus Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260 |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253 Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315 ||||||||| |||||||||||||||||||| ||||| || ||||| || |||||| Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 1198
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 75.8 bits (38), Expect = 8e-11 Identities = 112/137 (81%) Strand = Plus / Minus Query: 178 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 237 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753 Query: 238 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtnaccttg 297 ||||| ||||||||||| | || ||||| || ||||||||||| || || || |||||| Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693 Query: 298 gcggggtcgatgacacc 314 || |||||||| ||||| Sbjct: 1692 gcagggtcgatcacacc 1676
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 75.8 bits (38), Expect = 8e-11 Identities = 112/137 (81%) Strand = Plus / Minus Query: 178 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 237 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012 Query: 238 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtnaccttg 297 ||||| ||||||||||| | || ||||| || ||||||||||| || || || |||||| Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952 Query: 298 gcggggtcgatgacacc 314 || |||||||| ||||| Sbjct: 951 gcagggtcgatcacacc 935
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 60.0 bits (30), Expect = 5e-06 Identities = 83/101 (82%) Strand = Plus / Minus Query: 214 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718 Query: 274 tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314 || | ||| ||||| || ||||| || ||||| || ||||| Sbjct: 1717 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 1677
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 5e-06 Identities = 83/101 (82%) Strand = Plus / Plus Query: 214 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792 Query: 274 tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314 || | ||| ||||| || ||||| || ||||| || ||||| Sbjct: 35977793 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 35977833
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 60.0 bits (30), Expect = 5e-06 Identities = 83/101 (82%) Strand = Plus / Plus Query: 214 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303 Query: 274 tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314 || | ||| ||||| || ||||| || ||||| || ||||| Sbjct: 39304 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 39344
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 60.0 bits (30), Expect = 5e-06 Identities = 83/101 (82%) Strand = Plus / Minus Query: 214 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827 Query: 274 tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314 || | ||| ||||| || ||||| || ||||| || ||||| Sbjct: 826 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 786
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 5e-06 Identities = 83/101 (82%) Strand = Plus / Plus Query: 214 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866 Query: 274 tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314 || | ||| ||||| || ||||| || ||||| || ||||| Sbjct: 36067867 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 36067907
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 60.0 bits (30), Expect = 5e-06 Identities = 86/105 (81%) Strand = Plus / Minus Query: 210 cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggc 269 |||||||||||| || ||||| ||||| || || || |||||||| | ||| ||||| || Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790 Query: 270 gttctggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314 |||||| || ||||| || || || ||||| |||||||| ||||| Sbjct: 1789 gttctgcagggcgcacctagtcactttggcagggtcgatcacacc 1745
>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds Length = 313 Score = 48.1 bits (24), Expect = 0.017 Identities = 51/60 (85%) Strand = Plus / Minus Query: 204 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 263 |||||||||||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42
>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene Length = 2192 Score = 48.1 bits (24), Expect = 0.017 Identities = 38/43 (88%) Strand = Plus / Minus Query: 265 gcggcgttctggagcgcgcatctcgtnaccttggcggggtcga 307 |||||||||||||||||| | | ||| |||||||| ||||||| Sbjct: 1992 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1950
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 48.1 bits (24), Expect = 0.017 Identities = 38/43 (88%) Strand = Plus / Minus Query: 265 gcggcgttctggagcgcgcatctcgtnaccttggcggggtcga 307 |||||||||||||||||| | | ||| |||||||| ||||||| Sbjct: 1614 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1572
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 ggcggcgttctggagcgcgca 284 ||||||||||||||||||||| Sbjct: 752794 ggcggcgttctggagcgcgca 752774
>gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative AraC/XylS family transcription factor gene, complete cds Length = 984 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ggcggcgttctggagcgcgca 284 ||||||||||||||||||||| Sbjct: 69 ggcggcgttctggagcgcgca 89
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 ggcggcgttctggagcgcgca 284 ||||||||||||||||||||| Sbjct: 2073040 ggcggcgttctggagcgcgca 2073020
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 acctttttcactttcaattga 79 ||||||||||||||||||||| Sbjct: 146204 acctttttcactttcaattga 146184
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 ggcggcgttctggagcgcgca 284 ||||||||||||||||||||| Sbjct: 1647447 ggcggcgttctggagcgcgca 1647427
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 42.1 bits (21), Expect = 1.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 208 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccgg 256 ||||||||||| ||||||||||| || || ||||| | |||||| |||| Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccgg 1703
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 caccgaggcggcgttctggagcgcg 282 |||||| |||||||||||||||||| Sbjct: 2700886 caccgacgcggcgttctggagcgcg 2700910
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 40.1 bits (20), Expect = 4.2 Identities = 44/52 (84%) Strand = Plus / Minus Query: 203 ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattcc 254 |||| ||||| ||||||||||| || || ||||| ||||| || |||||||| Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcc 1744
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence Length = 188132 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cctgaactgaagcatctaaa 124 |||||||||||||||||||| Sbjct: 123998 cctgaactgaagcatctaaa 124017
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 caccgaggcggcgttctgga 277 |||||||||||||||||||| Sbjct: 344526 caccgaggcggcgttctgga 344545
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cggcttgggcttctcgacga 226 |||||||||||||||||||| Sbjct: 2275572 cggcttgggcttctcgacga 2275553
>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence Length = 151783 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ttagccttcggcttgggctt 218 |||||||||||||||||||| Sbjct: 147389 ttagccttcggcttgggctt 147408
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 accttggcggggtcgatgacaccc 315 |||||| ||||||||||||||||| Sbjct: 639066 accttgacggggtcgatgacaccc 639043
>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence Length = 226237 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gaactgaagcatctaaaaaa 127 |||||||||||||||||||| Sbjct: 206536 gaactgaagcatctaaaaaa 206517
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cggcttgggcttctcgacga 226 |||||||||||||||||||| Sbjct: 2297918 cggcttgggcttctcgacga 2297899
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gcggcgttctggagcgcgca 284 |||||||||||||||||||| Sbjct: 995302 gcggcgttctggagcgcgca 995321
>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence Length = 182245 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gaactgaagcatctaaaaaa 127 |||||||||||||||||||| Sbjct: 115349 gaactgaagcatctaaaaaa 115330 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,948,997 Number of Sequences: 3902068 Number of extensions: 1948997 Number of successful extensions: 33941 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33678 Number of HSP's gapped (non-prelim): 260 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)