ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-prote... 422 e-115
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 103 3e-19
3dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
4dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
5dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
6dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 103 3e-19
8emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb... 103 3e-19
9dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 8e-17
10gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence 76 8e-11
11gb|AY108518.1| Zea mays PCO123570 mRNA sequence 76 8e-11
12ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-06
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 5e-06
14gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom... 60 5e-06
15dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
17gb|AY108560.1| Zea mays PCO140434 mRNA sequence 60 5e-06
18gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, part... 48 0.017
19emb|X95971.1|SLGROEL2G S.lividans groEL2 gene 48 0.017
20gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GRO... 48 0.017
21gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.1
22gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative... 42 1.1
23emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.1
24gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 42 1.1
25gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.1
26gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacp... 42 1.1
27gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.1
28gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence 40 4.2
29gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome... 40 4.2
30emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.2
31dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 4.2
32gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, com... 40 4.2
33dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 4.2
34gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, comple... 40 4.2
35gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 4.2
36gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 4.2
37gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome... 40 4.2

>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit
          Length = 1834

 Score =  422 bits (213), Expect = e-115
 Identities = 303/330 (91%), Gaps = 14/330 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttcagatcaggcgaggaaggttacctttcgattcgcaaaaatggcaatcctactct---- 56
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
Sbjct: 1801 ttcagatcaggcgaggaaggttaccgttcgattcgcaaaaatggcaatcctactcttact 1742

                                                                        
Query: 57   --agacctttttcactttcaattgatctcaaccaaaattctactgcttggcctgaactga 114
              ||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1741 ctagaccttt--cactttcagttgatctcaaccgaaattctactgcttggcctgaactga 1684

                                                                        
Query: 115  agcatctaaaaaacacggacgaggcctgaagag--ctttacag---gctcgatcagacgg 169
             |||||||||||| ||||| |||||||||||||  |||||||    ||||||||||||||
Sbjct: 1683 ggcatctaaaaaa-acggaggaggcctgaagagagctttacatacagctcgatcagacgg 1625

                                                                        
Query: 170  agagctgcccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacga 229
            |||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||
Sbjct: 1624 agagctgcccctccgctggctcggcgaccttgggcttgggcttgggcttctcgacgacga 1565

                                                                        
Query: 230  tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 1505

                                          
Query: 290  tnaccttggcggggtcgatgacacccnact 319
            | |||||||||||||||||||| ||| |||
Sbjct: 1504 tcaccttggcggggtcgatgacgcccgact 1475



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                            
Query: 201      agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
                |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580

                                                                       
Query: 261      cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
                ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 10296525



to top

>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full
            insert sequence
          Length = 2070

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 201  agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
            |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726

                                                                   
Query: 261  cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
            ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 1671



to top

>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full
           insert sequence
          Length = 1119

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
           |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795

                                                                  
Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
           ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 740



to top

>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full
            insert sequence
          Length = 1985

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 201  agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
            |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724

                                                                   
Query: 261  cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
            ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 1669



to top

>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full
           insert sequence
          Length = 1087

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 201 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
           |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743

                                                                  
Query: 261 cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
           ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 688



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                            
Query: 201      agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
                |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462

                                                                       
Query: 261      cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
                ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 10296407



to top

>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score =  103 bits (52), Expect = 3e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                         
Query: 201   agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
             |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499

                                                                    
Query: 261   cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
             ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 59444



to top

>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full
            insert sequence
          Length = 1543

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 201  agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 260
            |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | |||
Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253

                                                                   
Query: 261  cgaggcggcgttctggagcgcgcatctcgtnaccttggcggggtcgatgacaccc 315
            ||||||||| |||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacaccc 1198



to top

>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence
          Length = 2106

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 112/137 (81%)
 Strand = Plus / Minus

                                                                        
Query: 178  ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 237
            ||||||| |||||| || || | || ||||||||| |||||||| || || || || |||
Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753

                                                                        
Query: 238  gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtnaccttg 297
            ||||| ||||||||||| |  || ||||| || ||||||||||| || || || ||||||
Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693

                             
Query: 298  gcggggtcgatgacacc 314
            || |||||||| |||||
Sbjct: 1692 gcagggtcgatcacacc 1676



to top

>gb|AY108518.1| Zea mays PCO123570 mRNA sequence
          Length = 1387

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 112/137 (81%)
 Strand = Plus / Minus

                                                                        
Query: 178  ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 237
            ||||||| |||||| || || | || ||||||||| |||||||| || || || || |||
Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012

                                                                        
Query: 238  gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtnaccttg 297
            ||||| ||||||||||| |  || ||||| || ||||||||||| || || || ||||||
Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952

                             
Query: 298  gcggggtcgatgacacc 314
            || |||||||| |||||
Sbjct: 951  gcagggtcgatcacacc 935



to top

>ref|XM_470503.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1998

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 214  ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273
            |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| 
Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718

                                                     
Query: 274  tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314
            || | ||| ||||| || ||||| || ||||| || |||||
Sbjct: 1717 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 1677



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 214      ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273
                |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| 
Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792

                                                         
Query: 274      tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314
                || | ||| ||||| || ||||| || ||||| || |||||
Sbjct: 35977793 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 35977833



to top

>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
             sequence
          Length = 164179

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                         
Query: 214   ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273
             |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| 
Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303

                                                      
Query: 274   tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314
             || | ||| ||||| || ||||| || ||||| || |||||
Sbjct: 39304 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 39344



to top

>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full
           insert sequence
          Length = 1107

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 214 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273
           |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| 
Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827

                                                    
Query: 274 tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314
           || | ||| ||||| || ||||| || ||||| || |||||
Sbjct: 826 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 786



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 214      ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 273
                |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| 
Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866

                                                         
Query: 274      tggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314
                || | ||| ||||| || ||||| || ||||| || |||||
Sbjct: 36067867 tgcaacgcacatcttgtcacctttgcagggtcaatcacacc 36067907



to top

>gb|AY108560.1| Zea mays PCO140434 mRNA sequence
          Length = 2143

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                        
Query: 210  cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggc 269
            |||||||||||| || ||||| ||||| || || || |||||||| | ||| ||||| ||
Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790

                                                         
Query: 270  gttctggagcgcgcatctcgtnaccttggcggggtcgatgacacc 314
            |||||| || ||||| || || || ||||| |||||||| |||||
Sbjct: 1789 gttctgcagggcgcacctagtcactttggcagggtcgatcacacc 1745



to top

>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds
          Length = 313

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 204 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 263
           |||||||||||||||||| || || || ||||| || || ||||||||||| | ||||||
Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42



to top

>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene
          Length = 2192

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 265  gcggcgttctggagcgcgcatctcgtnaccttggcggggtcga 307
            |||||||||||||||||| | | ||| |||||||| |||||||
Sbjct: 1992 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1950



to top

>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds
          Length = 1814

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 265  gcggcgttctggagcgcgcatctcgtnaccttggcggggtcga 307
            |||||||||||||||||| | | ||| |||||||| |||||||
Sbjct: 1614 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1572



to top

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    ggcggcgttctggagcgcgca 284
              |||||||||||||||||||||
Sbjct: 752794 ggcggcgttctggagcgcgca 752774



to top

>gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative AraC/XylS family
           transcription factor gene, complete cds
          Length = 984

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 ggcggcgttctggagcgcgca 284
           |||||||||||||||||||||
Sbjct: 69  ggcggcgttctggagcgcgca 89



to top

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 264     ggcggcgttctggagcgcgca 284
               |||||||||||||||||||||
Sbjct: 2073040 ggcggcgttctggagcgcgca 2073020



to top

>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     acctttttcactttcaattga 79
              |||||||||||||||||||||
Sbjct: 146204 acctttttcactttcaattga 146184



to top

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 264     ggcggcgttctggagcgcgca 284
               |||||||||||||||||||||
Sbjct: 1647447 ggcggcgttctggagcgcgca 1647427



to top

>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds;
            nuclear gene for mitochondrial product
          Length = 1977

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 208  ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccgg 256
            ||||||||||| ||||||||||| || || ||||| | |||||| ||||
Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccgg 1703



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 258     caccgaggcggcgttctggagcgcg 282
               |||||| ||||||||||||||||||
Sbjct: 2700886 caccgacgcggcgttctggagcgcg 2700910



to top

>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence
          Length = 2098

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 203  ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattcc 254
            |||| ||||| ||||||||||| || || ||||| ||||| || ||||||||
Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcc 1744



to top

>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    cctgaactgaagcatctaaa 124
              ||||||||||||||||||||
Sbjct: 123998 cctgaactgaagcatctaaa 124017



to top

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    caccgaggcggcgttctgga 277
              ||||||||||||||||||||
Sbjct: 344526 caccgaggcggcgttctgga 344545



to top

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     cggcttgggcttctcgacga 226
               ||||||||||||||||||||
Sbjct: 2275572 cggcttgggcttctcgacga 2275553



to top

>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence
          Length = 151783

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    ttagccttcggcttgggctt 218
              ||||||||||||||||||||
Sbjct: 147389 ttagccttcggcttgggctt 147408



to top

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 292    accttggcggggtcgatgacaccc 315
              |||||| |||||||||||||||||
Sbjct: 639066 accttgacggggtcgatgacaccc 639043



to top

>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence
          Length = 226237

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gaactgaagcatctaaaaaa 127
              ||||||||||||||||||||
Sbjct: 206536 gaactgaagcatctaaaaaa 206517



to top

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     cggcttgggcttctcgacga 226
               ||||||||||||||||||||
Sbjct: 2297918 cggcttgggcttctcgacga 2297899



to top

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    gcggcgttctggagcgcgca 284
              ||||||||||||||||||||
Sbjct: 995302 gcggcgttctggagcgcgca 995321



to top

>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence
          Length = 182245

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gaactgaagcatctaaaaaa 127
              ||||||||||||||||||||
Sbjct: 115349 gaactgaagcatctaaaaaa 115330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,948,997
Number of Sequences: 3902068
Number of extensions: 1948997
Number of successful extensions: 33941
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33678
Number of HSP's gapped (non-prelim): 260
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top