ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36e18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC133514.4| Mus musculus BAC clone RP23-212F6 from chromosome... 40 3.3
2gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosom... 40 3.3
3gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, comple... 40 3.3
4gb|AY279847.1| Pteragogus cryptus Tmo-4C4 (Tmo-4C4) gene, partia... 40 3.3
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
6gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome ... 40 3.3
7emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chro... 40 3.3
8dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
9gb|AY509272.1| Uncultured Flavobacteriales bacterium clone LiUU-... 40 3.3

>gb|AC133514.4| Mus musculus BAC clone RP23-212F6 from chromosome 5, complete sequence
          Length = 208083

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ccagttatgtgatagtacaa 20
              ||||||||||||||||||||
Sbjct: 151512 ccagttatgtgatagtacaa 151531



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>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   gacaagggatggtgacttcc 140
             ||||||||||||||||||||
Sbjct: 48446 gacaagggatggtgacttcc 48465



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>gb|AC116659.3| Mus musculus BAC clone RP24-147E15 from 7, complete sequence
          Length = 140476

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   gacaagggatggtgacttcc 140
             ||||||||||||||||||||
Sbjct: 95685 gacaagggatggtgacttcc 95704



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>gb|AY279847.1| Pteragogus cryptus Tmo-4C4 (Tmo-4C4) gene, partial cds
          Length = 475

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 taatgacaagggatggtgac 136
           ||||||||||||||||||||
Sbjct: 114 taatgacaagggatggtgac 133



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       aggatacaatagcaacacca 91
                ||||||||||||||||||||
Sbjct: 18542704 aggatacaatagcaacacca 18542723



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>gb|AC128737.4| Mus musculus BAC clone RP23-99A8 from chromosome unknown, complete
              sequence
          Length = 211960

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    tataagaaactatctcctgc 160
              ||||||||||||||||||||
Sbjct: 157626 tataagaaactatctcctgc 157645



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>emb|BX649615.6| Mouse DNA sequence from clone RP23-273I8 on chromosome X, complete
             sequence
          Length = 88938

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tataagaaactatctcctgc 160
             ||||||||||||||||||||
Sbjct: 76626 tataagaaactatctcctgc 76607



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>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1789_D08
          Length = 128673

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aggatacaatagcaacacca 91
             ||||||||||||||||||||
Sbjct: 83843 aggatacaatagcaacacca 83862



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>gb|AY509272.1| Uncultured Flavobacteriales bacterium clone LiUU-3-244 16S
           ribosomal RNA gene, partial sequence
          Length = 724

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  ggtgttctgtgtaataatct 114
           ||||||||||||||||||||
Sbjct: 680 ggtgttctgtgtaataatct 661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,853,736
Number of Sequences: 3902068
Number of extensions: 1853736
Number of successful extensions: 27489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27470
Number of HSP's gapped (non-prelim): 19
length of query: 255
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 233
effective length of database: 17,147,199,772
effective search space: 3995297546876
effective search space used: 3995297546876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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