ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35p10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY283437.1| Xenopus laevis adenylate cyclase type VII mRNA, partial cds Length = 2002 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 cctttttcctgttcataacctt 298 |||||||||||||||||||||| Sbjct: 56 cctttttcctgttcataacctt 77
>ref|XM_466788.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1019 Score = 42.1 bits (21), Expect = 2.3 Identities = 51/61 (83%) Strand = Plus / Minus Query: 419 agcttgcctttccaaggaaataatttctctttgaagttcttcatattccatgttagcatc 478 |||||| ||||| |||||| || ||| |||||||||||||| |||| |||||||||| Sbjct: 563 agcttgtctttctaaggaagaaagctctttttgaagttcttcagattcattgttagcatc 504 Query: 479 t 479 | Sbjct: 503 t 503 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 502 caagttctgcatccagttccgaatcagaactcccatc 538 ||||||| ||||| || |||||||||||| ||||||| Sbjct: 480 caagttcagcatcgagatccgaatcagaattcccatc 444 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tctcccaattgctcattcttttat 648 ||||||||||||||||||| |||| Sbjct: 360 tctcccaattgctcattctcttat 337
>ref|XM_506869.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1372_D06.21 mRNA Length = 1108 Score = 42.1 bits (21), Expect = 2.3 Identities = 51/61 (83%) Strand = Plus / Minus Query: 419 agcttgcctttccaaggaaataatttctctttgaagttcttcatattccatgttagcatc 478 |||||| ||||| |||||| || ||| |||||||||||||| |||| |||||||||| Sbjct: 601 agcttgtctttctaaggaagaaagctctttttgaagttcttcagattcattgttagcatc 542 Query: 479 t 479 | Sbjct: 541 t 541 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 502 caagttctgcatccagttccgaatcagaactcccatc 538 ||||||| ||||| || |||||||||||| ||||||| Sbjct: 518 caagttcagcatcgagatccgaatcagaattcccatc 482 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tctcccaattgctcattcttttat 648 ||||||||||||||||||| |||| Sbjct: 398 tctcccaattgctcattctcttat 375
>gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome 18, complete sequence Length = 193005 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 atttctctttgaagttcttca 461 ||||||||||||||||||||| Sbjct: 38673 atttctctttgaagttcttca 38653
>emb|AL390959.12| Human DNA sequence from clone RP1-44L3 on chromosome 6 Contains a CpG island, complete sequence Length = 105239 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 438 ataatttctctttgaagttcttcat 462 |||||||||||||||| |||||||| Sbjct: 2663 ataatttctctttgaatttcttcat 2687
>emb|AL121959.15|HSDJ78N10 Human DNA sequence from clone RP1-78N10 on chromosome 6q22.33-23.3 Contains the 5' end of the EYA4 gene for eyes absent homolog 4 (Drosophila) (Deafness, autosomal nonsyndromic sensorineural, 10 (DFNA10)) and a novel gene. Contains a CpG island, complete sequence Length = 136377 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 425 cctttccaaggaaataatttctctttgaa 453 ||||| || |||||||||||||||||||| Sbjct: 117127 cctttacatggaaataatttctctttgaa 117155
>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence Length = 208109 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 atttctctttgaagttcttca 461 ||||||||||||||||||||| Sbjct: 94561 atttctctttgaagttcttca 94581
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 502 caagttctgcatccagttccgaatcagaactcccatc 538 ||||||| ||||| || |||||||||||| ||||||| Sbjct: 24688748 caagttcagcatcgagatccgaatcagaattcccatc 24688712 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tctcccaattgctcattcttttat 648 ||||||||||||||||||| |||| Sbjct: 24688345 tctcccaattgctcattctcttat 24688322
>dbj|AB167473.1| Chlamydomonas reinhardtii NSG5 mRNA for NSG5 protein, complete cds Length = 3594 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 ttgacaagattacagcgcgca 77 ||||||||||||||||||||| Sbjct: 290 ttgacaagattacagcgcgca 310
>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1372_D06 Length = 129242 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 502 caagttctgcatccagttccgaatcagaactcccatc 538 ||||||| ||||| || |||||||||||| ||||||| Sbjct: 70146 caagttcagcatcgagatccgaatcagaattcccatc 70110 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tctcccaattgctcattcttttat 648 ||||||||||||||||||| |||| Sbjct: 69743 tctcccaattgctcattctcttat 69720
>dbj|AK099327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033014J17, full insert sequence Length = 1019 Score = 42.1 bits (21), Expect = 2.3 Identities = 51/61 (83%) Strand = Plus / Minus Query: 419 agcttgcctttccaaggaaataatttctctttgaagttcttcatattccatgttagcatc 478 |||||| ||||| |||||| || ||| |||||||||||||| |||| |||||||||| Sbjct: 563 agcttgtctttctaaggaagaaagctctttttgaagttcttcagattcattgttagcatc 504 Query: 479 t 479 | Sbjct: 503 t 503 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 502 caagttctgcatccagttccgaatcagaactcccatc 538 ||||||| ||||| || |||||||||||| ||||||| Sbjct: 480 caagttcagcatcgagatccgaatcagaattcccatc 444 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tctcccaattgctcattcttttat 648 ||||||||||||||||||| |||| Sbjct: 360 tctcccaattgctcattctcttat 337
>emb|CR956626.9| Zebrafish DNA sequence from clone CH73-162I18 in linkage group 22, complete sequence Length = 123595 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 aatcagaactcccatctttatgcaa 547 ||||||||||||||| ||||||||| Sbjct: 31409 aatcagaactcccatttttatgcaa 31433
>dbj|AK061245.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D09, full insert sequence Length = 1117 Score = 42.1 bits (21), Expect = 2.3 Identities = 51/61 (83%) Strand = Plus / Minus Query: 419 agcttgcctttccaaggaaataatttctctttgaagttcttcatattccatgttagcatc 478 |||||| ||||| |||||| || ||| |||||||||||||| |||| |||||||||| Sbjct: 610 agcttgtctttctaaggaagaaagctctttttgaagttcttcagattcattgttagcatc 551 Query: 479 t 479 | Sbjct: 550 t 550 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 502 caagttctgcatccagttccgaatcagaactcccatc 538 ||||||| ||||| || |||||||||||| ||||||| Sbjct: 527 caagttcagcatcgagatccgaatcagaattcccatc 491 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 625 tctcccaattgctcattcttttat 648 ||||||||||||||||||| |||| Sbjct: 408 tctcccaattgctcattctcttat 385
>gb|AC153801.1| Mus musculus 10 NOVECTOR RP24-255E19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156755 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ttgtatgtagcttgcctttc 430 |||||||||||||||||||| Sbjct: 54990 ttgtatgtagcttgcctttc 55009
>gb|AC120437.7| Mus musculus chromosome 5, clone RP24-571K14, complete sequence Length = 147493 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 aggaaataatttctctttgaagtt 456 ||||||||| |||||||||||||| Sbjct: 45038 aggaaataaattctctttgaagtt 45015
>ref|NM_004799.2| Homo sapiens zinc finger, FYVE domain containing 9 (ZFYVE9), transcript variant 3, mRNA Length = 4930 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1302 tgttcataaccttcattttc 1283
>ref|XM_513406.1| PREDICTED: Pan troglodytes zinc finger, FYVE domain containing 9 (LOC456855), mRNA Length = 4275 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1130 tgttcataaccttcattttc 1111
>ref|NM_007323.1| Homo sapiens zinc finger, FYVE domain containing 9 (ZFYVE9), transcript variant 2, mRNA Length = 2625 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1302 tgttcataaccttcattttc 1283
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 tcttcatatggtttcattacttca 386 ||||||||| |||||||||||||| Sbjct: 3132827 tcttcatattgtttcattacttca 3132850
>ref|NM_007324.2| Homo sapiens zinc finger, FYVE domain containing 9 (ZFYVE9), transcript variant 1, mRNA Length = 4753 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1302 tgttcataaccttcattttc 1283
>gb|AC135371.2| Homo sapiens X BAC RP11-142G7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 25901 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ggaaataatttctctttgaa 453 |||||||||||||||||||| Sbjct: 15688 ggaaataatttctctttgaa 15669
>gb|AC121968.3| Mus musculus BAC clone RP24-272N4 from chromosome 6, complete sequence Length = 193207 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ggtgctaggagtagaactag 204 |||||||||||||||||||| Sbjct: 102989 ggtgctaggagtagaactag 103008
>gb|AC113124.9| Mus musculus chromosome 19, clone RP23-350M1, complete sequence Length = 216547 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttcaggtacagttaaacatt 609 |||||||||||||||||||| Sbjct: 159348 ttcaggtacagttaaacatt 159367
>emb|AL596247.22| Human DNA sequence from clone RP11-417O11 on chromosome 10 Contains the 5' end of the CAMK2G gene for calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma, the PLAU gene for plasminogen activator urokinase, three novel genes (FLJ35198), the 5' end of the VCL gene for vinculin and three CpG islands, complete sequence Length = 228098 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcagcctttttcctgttcat 292 |||||||||||||||||||| Sbjct: 140598 tcagcctttttcctgttcat 140579
>emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chromosome 20 Contains the 3' end of the C20orf152 gene and a CpG island, complete sequence Length = 38545 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 agatttgtcttcatatggtttcat 379 |||||||||||| ||||||||||| Sbjct: 11869 agatttgtcttcctatggtttcat 11892
>emb|AL356796.16| Human DNA sequence from clone RP11-82I1 on chromosome 9 Contains the 3' end of a novel gene (FLJ11985, MGC11337) (KIAA0870), the ORM1 gene for orosomucoid 1 (AGP1, AGP-A), the ORM2 gene for orosomucoid 2 (AGP2, AGP-B) and the gene for AT-hook transcription factor AKNA, complete sequence Length = 125673 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ttgcctttccaaggaaataa 441 |||||||||||||||||||| Sbjct: 4443 ttgcctttccaaggaaataa 4462
>gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161577 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccctggcctcagcctttttc 284 |||||||||||||||||||| Sbjct: 161511 ccctggcctcagcctttttc 161492
>gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone rp23-282p18, complete sequence Length = 217766 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 ataatttctctttgaagttcttca 461 ||||||||||||||||||| |||| Sbjct: 115360 ataatttctctttgaagttattca 115383
>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence Length = 194619 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 atcaagttctgcatccagtt 519 |||||||||||||||||||| Sbjct: 38720 atcaagttctgcatccagtt 38701
>gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, complete sequence Length = 172180 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 atcaagttctgcatccagtt 519 |||||||||||||||||||| Sbjct: 81567 atcaagttctgcatccagtt 81586
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 ttctctttgaagttcttcat 462 |||||||||||||||||||| Sbjct: 720676 ttctctttgaagttcttcat 720695
>gb|AC115623.2| Homo sapiens BAC clone RP11-418H10 from 4, complete sequence Length = 63920 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 atattccatgttagcatctg 480 |||||||||||||||||||| Sbjct: 1453 atattccatgttagcatctg 1472
>gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15q21.3, complete sequence Length = 171114 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ccaaggaaataatttctctttgaa 453 ||||||||| |||||||||||||| Sbjct: 19887 ccaaggaaacaatttctctttgaa 19864
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 tgaagttcttcatattccat 469 |||||||||||||||||||| Sbjct: 6078213 tgaagttcttcatattccat 6078194
>gb|AC025918.7| Homo sapiens chromosome 15 clone RP11-313H3 map 15q21.3, complete sequence Length = 187734 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ccaaggaaataatttctctttgaa 453 ||||||||| |||||||||||||| Sbjct: 187192 ccaaggaaacaatttctctttgaa 187169
>gb|AC097459.3| Homo sapiens BAC clone RP11-13F20 from 4, complete sequence Length = 161519 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 atattccatgttagcatctg 480 |||||||||||||||||||| Sbjct: 160974 atattccatgttagcatctg 160993
>gb|AC007215.49| Homo sapiens 12 BAC RP11-59H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 122001 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccctggcctcagcctttttc 284 |||||||||||||||||||| Sbjct: 1963 ccctggcctcagcctttttc 1944
>gb|AC010165.10|AC010165 Homo sapiens chromosome 5 clone RP11-17J3, complete sequence Length = 168909 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 atcaagttctgcatccagtt 519 |||||||||||||||||||| Sbjct: 148752 atcaagttctgcatccagtt 148733
>gb|AC093785.3| Homo sapiens BAC clone RP11-212M1 from 2, complete sequence Length = 62466 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 caaggaaataatttctcttt 450 |||||||||||||||||||| Sbjct: 49500 caaggaaataatttctcttt 49519
>gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159240 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 gcagctgttctataaacctg 29 |||||||||||||||||||| Sbjct: 94652 gcagctgttctataaacctg 94671
>gb|AC068056.7| Homo sapiens BAC clone RP11-84M3 from 2, complete sequence Length = 193017 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tgttctataaacctgcagtt 34 |||||||||||||||||||| Sbjct: 22543 tgttctataaacctgcagtt 22562
>gb|AC105754.3| Homo sapiens chromosome 1 clone RP4-814E15, complete sequence Length = 133799 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 61148 tgttcataaccttcattttc 61129
>gb|AY890577.1| Synthetic construct Homo sapiens clone FLH140350.01X zinc finger FYVE domain containing 9 (MADHIP) mRNA, complete cds Length = 4278 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1130 tgttcataaccttcattttc 1111
>gb|BC032680.1| Homo sapiens zinc finger, FYVE domain containing 9, transcript variant 3, mRNA (cDNA clone MGC:45259 IMAGE:5585817), complete cds Length = 4769 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1141 tgttcataaccttcattttc 1122
>gb|AF130420.1|AF130420 Homo sapiens serine protease-like protein isoform (NSP) mRNA, alternatively spliced, complete cds Length = 2625 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1302 tgttcataaccttcattttc 1283
>gb|AF130419.1|AF130419 Homo sapiens serine protease-like protein isoform (NSP) mRNA, alternatively spliced, complete cds Length = 4565 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1302 tgttcataaccttcattttc 1283
>gb|AF104304.1|AF104304 Homo sapiens Smad anchor for receptor activation (SARA) mRNA, complete cds Length = 4839 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 1262 tgttcataaccttcattttc 1243
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 tacagttaaacattgcagaa 615 |||||||||||||||||||| Sbjct: 1260857 tacagttaaacattgcagaa 1260876
>dbj|AB209125.1| Homo sapiens mRNA for zinc finger, FYVE domain containing 9 isoform 3 variant protein Length = 4416 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgttcataaccttcattttc 305 |||||||||||||||||||| Sbjct: 856 tgttcataaccttcattttc 837
>gb|AC153502.3| Mus musculus 10 BAC RP23-407K15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192541 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 aacagatttgtcttcatatg 372 |||||||||||||||||||| Sbjct: 21645 aacagatttgtcttcatatg 21664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,739,248 Number of Sequences: 3902068 Number of extensions: 5739248 Number of successful extensions: 102268 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102072 Number of HSP's gapped (non-prelim): 196 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
