>gb|AC154486.2| Mus musculus BAC clone RP24-118H13 from chromosome 17, complete sequence
          Length = 197387

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 161    aaaacaaggaatgcaaaattct 182
              ||||||||||||||||||||||
Sbjct: 155246 aaaacaaggaatgcaaaattct 155267

>gb|AC125309.4| Mus musculus BAC clone RP24-488N15 from chromosome 17, complete
             sequence
          Length = 150271

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 161   aaaacaaggaatgcaaaattct 182
             ||||||||||||||||||||||
Sbjct: 45150 aaaacaaggaatgcaaaattct 45171

>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     tagattatgatacaacaggaa 46
              |||||||||||||||||||||
Sbjct: 565026 tagattatgatacaacaggaa 565046

>gb|AC174465.2| Medicago truncatula chromosome 2 BAC clone mth2-189f20, complete
             sequence
          Length = 90320

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   acaatttatcctgaaaaacaa 167
             |||||||||||||||||||||
Sbjct: 13408 acaatttatcctgaaaaacaa 13388

>gb|AC092274.2| Homo sapiens chromosome 5 clone CTC-537D8, complete sequence
          Length = 148579

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 241   cagaaaatcctggagatgcttagga 265
             ||||||||||||| |||||||||||
Sbjct: 27800 cagaaaatcctggtgatgcttagga 27824

>gb|AC092079.2| Homo sapiens chromosome 15 clone RP11-568G20 map 15q22, complete
             sequence
          Length = 195554

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    cttttctttactttccctttc 96
             |||||||||||||||||||||
Sbjct: 61029 cttttctttactttccctttc 61049

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 159     gaaaaacaaggaatgcaaaat 179
               |||||||||||||||||||||
Sbjct: 1627032 gaaaaacaaggaatgcaaaat 1627052

>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete sequence
          Length = 187429

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     cttttctttactttccctttc 96
              |||||||||||||||||||||
Sbjct: 183852 cttttctttactttccctttc 183872

>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1007_D04
          Length = 125503

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   gaaaaacaaggaatgcaaaat 179
             |||||||||||||||||||||
Sbjct: 64135 gaaaaacaaggaatgcaaaat 64155

>dbj|AK105854.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H03, full
           insert sequence
          Length = 1746

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 gaaaaacaaggaatgcaaaat 179
           |||||||||||||||||||||
Sbjct: 58  gaaaaacaaggaatgcaaaat 78

>gb|AC023285.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-333I11, complete
             sequence
          Length = 192255

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    atcccttttctttactttcc 91
             ||||||||||||||||||||
Sbjct: 18543 atcccttttctttactttcc 18562

>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein 2
            (130 kDa retinoblastoma-associated protein) (PRB2) (P130)
            (RBR-2), transcript variant 1 (LOC478127), mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 15   ttaatgcatgctagattatg 34
            ||||||||||||||||||||
Sbjct: 3559 ttaatgcatgctagattatg 3578

>gb|DQ067615.1| Rattus norvegicus cationic amino acid transporter-2 (CAT2) gene,
             complete cds, alternatively spliced
          Length = 25411

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    ccttttctttactttccctt 94
             ||||||||||||||||||||
Sbjct: 22582 ccttttctttactttccctt 22601

>gb|AC164289.3| Mus musculus BAC clone RP23-380L19 from chromosome 6, complete sequence
          Length = 212908

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    atcccttttctttactttcc 91
             ||||||||||||||||||||
Sbjct: 35945 atcccttttctttactttcc 35926

>emb|AL596164.1| Listeria innocua Clip11262 complete genome, segment 2/12
          Length = 224650

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 155    tcctgaaaaacaaggaatgcaaaa 178
              |||||||||||||||| |||||||
Sbjct: 221568 tcctgaaaaacaaggactgcaaaa 221591

>gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, region 56F-57A, BAC clone
             BACR10H12, complete sequence
          Length = 166168

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    cttttctttactttccctttcaac 99
             ||||||||| ||||||||||||||
Sbjct: 45498 cttttctttcctttccctttcaac 45475

>gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 18, complete sequence
          Length = 183082

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    aatgacagcatcaaacattg 67
             ||||||||||||||||||||
Sbjct: 20083 aatgacagcatcaaacattg 20064

>emb|AL138644.1|ATT18D12 Arabidopsis thaliana DNA chromosome 3, BAC clone T18D12
          Length = 100678

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   caatttatcctgaaaaacaa 167
             ||||||||||||||||||||
Sbjct: 41253 caatttatcctgaaaaacaa 41234

>gb|AC008109.6|AC008109 Homo sapiens chromosome 18, clone RP11-476K15, complete sequence
          Length = 166819

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aatgacagcatcaaacattg 67
             ||||||||||||||||||||
Sbjct: 34781 aatgacagcatcaaacattg 34800

>emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in linkage group 4,
             complete sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     aaataacttaatgcatgcta 27
             ||||||||||||||||||||
Sbjct: 53144 aaataacttaatgcatgcta 53125

>emb|AL928936.9| Zebrafish DNA sequence from clone CH211-133H2 in linkage group 4,
             complete sequence
          Length = 157706

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     aaataacttaatgcatgcta 27
             ||||||||||||||||||||
Sbjct: 87436 aaataacttaatgcatgcta 87417

>emb|CT025579.12| Mouse DNA sequence from clone RP24-189A10 on chromosome 14, complete
             sequence
          Length = 173961

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ttttctttactttccctttc 96
             ||||||||||||||||||||
Sbjct: 88821 ttttctttactttccctttc 88802

>gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58 of 73 of the complete
              sequence
          Length = 256764

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     cttttctttactttccctttcaac 99
              ||||||||| ||||||||||||||
Sbjct: 100427 cttttctttcctttccctttcaac 100404

>emb|AL928856.5| Mouse DNA sequence from clone RP23-413G24 on chromosome 2, complete
             sequence
          Length = 108193

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    gcatcaaacattgtgggatc 74
             ||||||||||||||||||||
Sbjct: 36532 gcatcaaacattgtgggatc 36513

>dbj|AK115855.1| Ciona intestinalis cDNA, clone:cilv032g11, full insert sequence
          Length = 1309

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  ttatgatacaacaggaacaa 49
           ||||||||||||||||||||
Sbjct: 934 ttatgatacaacaggaacaa 953

>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 165     caaggaatgcaaaattcttt 184
               ||||||||||||||||||||
Sbjct: 2797874 caaggaatgcaaaattcttt 2797855

>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     atcccttttctttactttcc 91
              ||||||||||||||||||||
Sbjct: 525597 atcccttttctttactttcc 525616

>gb|AC004290.1|AC004290 Drosophila melanogaster DNA sequence (P1 DS04106 (D172)), complete
             sequence
          Length = 84653

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    cttttctttactttccctttcaac 99
             ||||||||| ||||||||||||||
Sbjct: 79516 cttttctttcctttccctttcaac 79493

>gb|AC156797.2| Mus musculus BAC clone RP24-88A16 from chromosome 14, complete sequence
          Length = 166341

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ttttctttactttccctttc 96
             ||||||||||||||||||||
Sbjct: 48631 ttttctttactttccctttc 48612

>emb|AL731834.2| Sminthopsis DNA sequence from clone XX-202F9, complete sequence
          Length = 60585

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 204   ccagaggcaagagatatttatata 227
             ||||||||||||||||||| ||||
Sbjct: 34135 ccagaggcaagagatatttttata 34158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,806,653
Number of Sequences: 3902068
Number of extensions: 3806653
Number of successful extensions: 71914
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71789
Number of HSP's gapped (non-prelim): 125
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)