ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35p01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464060.1| Oryza sativa (japonica cultivar-group), mRNA 488 e-134
2dbj|AK099849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 488 e-134
3gb|AY106064.1| Zea mays PCO078149 mRNA sequence 440 e-120
4dbj|AK060290.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 337 2e-89
6dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 337 2e-89
7dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 337 2e-89
8dbj|AB010877.1| Nicotiana tabacum mRNA for chloroplast ribosomal... 82 2e-12
9ref|NM_129864.2| Arabidopsis thaliana structural constituent of ... 58 3e-05
10gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map ... 58 3e-05
11emb|BX820844.1|CNS0AA76 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
12emb|BX819480.1|CNS0A8VF Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
13emb|BX819027.1|CNS0A91M Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
14dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 54 5e-04
15emb|BX819375.1|CNS0A8SQ Arabidopsis thaliana Full-length cDNA Co... 50 0.007
16gb|AY085287.1| Arabidopsis thaliana clone 142861 mRNA, complete ... 50 0.007
17ref|XM_481457.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.46
18gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.46
19gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.46
20gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Ho... 44 0.46
21gb|AC159251.2| Mus musculus BAC clone RP24-113B8 from chromosome... 44 0.46
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
23dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
24dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
25dbj|AK107492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.46
26dbj|AK102896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.46
27emb|CT030643.5| Mouse DNA sequence from clone RP23-348M4 on chro... 44 0.46
28emb|X58839.1|AVMVL1 Acholeplasma virus MV-L1 DNA for complete ci... 44 0.46
29gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome... 42 1.8
30ref|NM_196215.1| Oryza sativa (japonica cultivar-group) putative... 42 1.8
31gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. ... 42 1.8
32gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.8
33emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on ch... 42 1.8
34gb|AF239166.1| Sus scrofa methylenetetrahydrofolate reductase (M... 42 1.8
35gb|AC124213.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.8
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
37gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, comp... 42 1.8
38gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome... 42 1.8
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
40emb|BX088546.7| Mouse DNA sequence from clone RP23-96D6 on chrom... 42 1.8
41emb|AL645647.8| Mouse DNA sequence from clone RP23-332L17 on chr... 42 1.8
42gb|AC110553.10| Mus musculus chromosome 3, clone RP23-248D8, com... 40 7.2
43ref|XM_463578.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
44gb|AC161434.2| Mus musculus chromosome 3, clone RP23-7K18, compl... 40 7.2
45gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's ... 40 7.2
46gb|AC140247.3| Mus musculus BAC clone RP23-469I15 from chromosom... 40 7.2
47gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosom... 40 7.2
48ref|XM_545722.2| PREDICTED: Canis familiaris similar to toll-lik... 40 7.2
49gb|AC127318.4| Mus musculus BAC clone RP23-228J12 from chromosom... 40 7.2
50ref|XM_538452.2| PREDICTED: Canis familiaris similar to mitogen-... 40 7.2
51emb|AL162424.20| Human DNA sequence from clone RP11-498E2 on chr... 40 7.2
52emb|AL133378.16| Human DNA sequence from clone RP1-91B17 on chro... 40 7.2
53emb|X68594.1|PAXCPP Pseudomonas aeruginosa xcpP and xcpQ and orf... 40 7.2
54gb|BC063194.1| Xenopus tropicalis hypothetical protein MGC75601,... 40 7.2
55dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
56gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.2
57gb|AY228160.1| Rattus norvegicus 4.5S RNA(H) repeat region, part... 40 7.2
58dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
59gb|AE004734.1| Pseudomonas aeruginosa PAO1, section 295 of 529 o... 40 7.2
60gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 40 7.2
61dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
62dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
63ref|NM_203841.1| Xenopus tropicalis hypothetical protein MGC7560... 40 7.2
64dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
65dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 7.2
66dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 7.2
67dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
68dbj|AK103626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
69emb|CR848095.2| Xenopus tropicalis finished cDNA, clone TGas120a24 40 7.2
70emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 7.2
71gb|AY345225.2| Arsenite-oxidising bacterium NT-26 AroB (aroB), A... 40 7.2
72gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis g... 40 7.2 
>ref|XM_464060.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 974

 Score =  488 bits (246), Expect = e-134
 Identities = 420/478 (87%)
 Strand = Plus / Minus

                                                                       
Query: 53  gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
           |||||| |||||||||||||||||||||| ||||| || || | ||||||||| ||||||
Sbjct: 831 gtctagttcttggggatgttcttgccgacgatcttggcaggagcgatgcggaggaggttc 772

                                                                       
Query: 113 ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
           ||  ||||||| |||| ||| ||||||||||| |||||||| || || ||||||||| ||
Sbjct: 771 ccgggcttccctggaacggcgcccttgatcatgacaactttcaggtcgttgtcgatcttg 712

                                                                       
Query: 173 acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 711 acgatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 652

                                                                       
Query: 233 cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
           |||||||||||||| || || || ||||| ||||||||||| || || ||||||||||||
Sbjct: 651 cccttgtacacccgacccggcgtcgtcccggcaccgatcgatcccagagctctgtggctc 592

                                                                       
Query: 293 ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttggaat 352
           ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 591 ttggagccgtgggtcatcagccctcgcttgaagttgtgcctcttgatgccaccttggaac 532

                                                                       
Query: 353 ccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaagagctcgttg 412
           ||||| |||||||| ||| |||||| |||||||||||||||||||||||| |  |||  |
Sbjct: 531 cccttgccgatggacttgccggagatgtcgacgaggtcgccctccttgaacatgtcggcg 472

                                                                       
Query: 413 aactcgagctcctggccagggtcgaaggcgtcgacggccaccagccggaattcctgcagg 472
           || ||||||  |||||| |||||| |  ||||||||| |   || ||||| |||||||||
Sbjct: 471 aagtcgagcggctggccggggtcgtacccgtcgacggactggaggcggaactcctgcagg 412

                                                                     
Query: 473 tggcgcagcggcggcgcgctagccttgccgaggtggcccagctccgggcgggtgagct 530
           ||||| |||||||||||||  ||||||||||||||||| |||||||||||||||||||
Sbjct: 411 tggcggagcggcggcgcgccggccttgccgaggtggccgagctccgggcgggtgagct 354
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>dbj|AK099849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110B11, full
           insert sequence
          Length = 974

 Score =  488 bits (246), Expect = e-134
 Identities = 420/478 (87%)
 Strand = Plus / Minus

                                                                       
Query: 53  gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
           |||||| |||||||||||||||||||||| ||||| || || | ||||||||| ||||||
Sbjct: 831 gtctagttcttggggatgttcttgccgacgatcttggcaggagcgatgcggaggaggttc 772

                                                                       
Query: 113 ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
           ||  ||||||| |||| ||| ||||||||||| |||||||| || || ||||||||| ||
Sbjct: 771 ccgggcttccctggaacggcgcccttgatcatgacaactttcaggtcgttgtcgatcttg 712

                                                                       
Query: 173 acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 711 acgatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 652

                                                                       
Query: 233 cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
           |||||||||||||| || || || ||||| ||||||||||| || || ||||||||||||
Sbjct: 651 cccttgtacacccgacccggcgtcgtcccggcaccgatcgatcccagagctctgtggctc 592

                                                                       
Query: 293 ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttggaat 352
           ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 591 ttggagccgtgggtcatcagccctcgcttgaagttgtgcctcttgatgccaccttggaac 532

                                                                       
Query: 353 ccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaagagctcgttg 412
           ||||| |||||||| ||| |||||| |||||||||||||||||||||||| |  |||  |
Sbjct: 531 cccttgccgatggacttgccggagatgtcgacgaggtcgccctccttgaacatgtcggcg 472

                                                                       
Query: 413 aactcgagctcctggccagggtcgaaggcgtcgacggccaccagccggaattcctgcagg 472
           || ||||||  |||||| |||||| |  ||||||||| |   || ||||| |||||||||
Sbjct: 471 aagtcgagcggctggccggggtcgtacccgtcgacggactggaggcggaactcctgcagg 412

                                                                     
Query: 473 tggcgcagcggcggcgcgctagccttgccgaggtggcccagctccgggcgggtgagct 530
           ||||| |||||||||||||  ||||||||||||||||| |||||||||||||||||||
Sbjct: 411 tggcggagcggcggcgcgccggccttgccgaggtggccgagctccgggcgggtgagct 354
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>gb|AY106064.1| Zea mays PCO078149 mRNA sequence
          Length = 905

 Score =  440 bits (222), Expect = e-120
 Identities = 414/478 (86%)
 Strand = Plus / Minus

                                                                       
Query: 53  gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
           |||||| |||||||||||||||||||||| ||||| || ||||| |||||||| ||||||
Sbjct: 888 gtctagttcttggggatgttcttgccgacgatcttggctggcgttatgcggaggaggttc 829

                                                                       
Query: 113 ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
           ||  ||||||| || | ||||||||||||||| |  ||   ||| |  ||||||||| ||
Sbjct: 828 ccgggcttccctggcacggcccccttgatcatgagcacccggaggttgttgtcgatcttg 769

                                                                       
Query: 173 acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 768 acaatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 709

                                                                       
Query: 233 cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
           ||||||||||| || || || || ||||| || ||||| ||||| ||    | |||||||
Sbjct: 708 cccttgtacacgcggcccggcgtcgtcccggctccgatggaacccagctgccggtggctc 649

                                                                       
Query: 293 ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttggaat 352
           ||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 648 ttggaaccgtgcgtcatcagcccgcgcttgaagttgtgcctcttgatgccaccttggaac 589

                                                                       
Query: 353 ccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaagagctcgttg 412
           ||||| |||||||| ||| |||||||||||| ||||||||||||||||||||| |||  |
Sbjct: 588 cccttgccgatggagttgccggagacgtcgatgaggtcgccctccttgaagaggtcggcg 529

                                                                       
Query: 413 aactcgagctcctggccagggtcgaaggcgtcgacggccaccagccggaattcctgcagg 472
           || |||||   |||||| || |||||||||||||||||    |||||||| |||||||||
Sbjct: 528 aagtcgaggggctggccgggctcgaaggcgtcgacggcggtgagccggaactcctgcagg 469

                                                                     
Query: 473 tggcgcagcggcggcgcgctagccttgccgaggtggcccagctccgggcgggtgagct 530
           |||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||
Sbjct: 468 tggcgcagcggcggggcgccggccttgcccaggtggcccagctccgggcgggtgagct 411
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>dbj|AK060290.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D05, full
           insert sequence
          Length = 527

 Score =  408 bits (206), Expect = e-111
 Identities = 314/350 (89%)
 Strand = Plus / Minus

                                                                       
Query: 53  gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
           |||||| |||||||||||||||||||||| ||||| || || | ||||||||| ||||||
Sbjct: 353 gtctagttcttggggatgttcttgccgacgatcttggcaggagcgatgcggaggaggttc 294

                                                                       
Query: 113 ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
           ||  ||||||| |||| ||| ||||||||||| |||||||| || || ||||||||| ||
Sbjct: 293 ccgggcttccctggaacggcgcccttgatcatgacaactttcaggtcgttgtcgatcttg 234

                                                                       
Query: 173 acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 233 acgatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 174

                                                                       
Query: 233 cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
           |||||||||||||| || || || ||||| ||||||||||| || || ||||||||||||
Sbjct: 173 cccttgtacacccgacccggcgtcgtcccggcaccgatcgatcccagagctctgtggctc 114

                                                                       
Query: 293 ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttggaat 352
           ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 113 ttggagccgtgggtcatcagccctcgcttgaagttgtgcctcttgatgccaccttggaac 54

                                                             
Query: 353 ccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaa 402
           ||||| |||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 53  cccttgccgatggacttgccggagatgtcgacgaggtcgccctccttgaa 4
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  337 bits (170), Expect = 2e-89
 Identities = 263/294 (89%)
 Strand = Plus / Plus

                                                                           
Query: 53      gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
               |||||| |||||||||||||||||||||| ||||| || || | ||||||||| ||||||
Sbjct: 1973113 gtctagttcttggggatgttcttgccgacgatcttggcaggagcgatgcggaggaggttc 1973172

                                                                           
Query: 113     ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
               ||  ||||||| |||| ||| ||||||||||| |||||||| || || ||||||||| ||
Sbjct: 1973173 ccgggcttccctggaacggcgcccttgatcatgacaactttcaggtcgttgtcgatcttg 1973232

                                                                           
Query: 173     acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1973233 acgatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 1973292

                                                                           
Query: 233     cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
               |||||||||||||| || || || ||||| ||||||||||| || || ||||||||||||
Sbjct: 1973293 cccttgtacacccgacccggcgtcgtcccggcaccgatcgatcccagagctctgtggctc 1973352

                                                                     
Query: 293     ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccacct 346
               ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 1973353 ttggagccgtgggtcatcagccctcgcttgaagttgtgcctcttgatgccacct 1973406



 Score =  159 bits (80), Expect = 1e-35
 Identities = 161/188 (85%)
 Strand = Plus / Plus

                                                                           
Query: 343     accttggaatccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaa 402
               ||||||||| ||||| |||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 1974136 accttggaaccccttgccgatggacttgccggagatgtcgacgaggtcgccctccttgaa 1974195

                                                                           
Query: 403     gagctcgttgaactcgagctcctggccagggtcgaaggcgtcgacggccaccagccggaa 462
                |  |||  ||| ||||||  |||||| |||||| |  ||||||||| |   || |||||
Sbjct: 1974196 catgtcggcgaagtcgagcggctggccggggtcgtacccgtcgacggactggaggcggaa 1974255

                                                                           
Query: 463     ttcctgcaggtggcgcagcggcggcgcgctagccttgccgaggtggcccagctccgggcg 522
                |||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||
Sbjct: 1974256 ctcctgcaggtggcggagcggcggcgcgccggccttgccgaggtggccgagctccgggcg 1974315

                       
Query: 523     ggtgagct 530
               ||||||||
Sbjct: 1974316 ggtgagct 1974323
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score =  337 bits (170), Expect = 2e-89
 Identities = 263/294 (89%)
 Strand = Plus / Plus

                                                                         
Query: 53    gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
             |||||| |||||||||||||||||||||| ||||| || || | ||||||||| ||||||
Sbjct: 23321 gtctagttcttggggatgttcttgccgacgatcttggcaggagcgatgcggaggaggttc 23380

                                                                         
Query: 113   ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
             ||  ||||||| |||| ||| ||||||||||| |||||||| || || ||||||||| ||
Sbjct: 23381 ccgggcttccctggaacggcgcccttgatcatgacaactttcaggtcgttgtcgatcttg 23440

                                                                         
Query: 173   acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 23441 acgatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 23500

                                                                         
Query: 233   cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
             |||||||||||||| || || || ||||| ||||||||||| || || ||||||||||||
Sbjct: 23501 cccttgtacacccgacccggcgtcgtcccggcaccgatcgatcccagagctctgtggctc 23560

                                                                   
Query: 293   ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccacct 346
             ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 23561 ttggagccgtgggtcatcagccctcgcttgaagttgtgcctcttgatgccacct 23614



 Score =  159 bits (80), Expect = 1e-35
 Identities = 161/188 (85%)
 Strand = Plus / Plus

                                                                         
Query: 343   accttggaatccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaa 402
             ||||||||| ||||| |||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 24344 accttggaaccccttgccgatggacttgccggagatgtcgacgaggtcgccctccttgaa 24403

                                                                         
Query: 403   gagctcgttgaactcgagctcctggccagggtcgaaggcgtcgacggccaccagccggaa 462
              |  |||  ||| ||||||  |||||| |||||| |  ||||||||| |   || |||||
Sbjct: 24404 catgtcggcgaagtcgagcggctggccggggtcgtacccgtcgacggactggaggcggaa 24463

                                                                         
Query: 463   ttcctgcaggtggcgcagcggcggcgcgctagccttgccgaggtggcccagctccgggcg 522
              |||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||
Sbjct: 24464 ctcctgcaggtggcggagcggcggcgcgccggccttgccgaggtggccgagctccgggcg 24523

                     
Query: 523   ggtgagct 530
             ||||||||
Sbjct: 24524 ggtgagct 24531
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score =  337 bits (170), Expect = 2e-89
 Identities = 263/294 (89%)
 Strand = Plus / Plus

                                                                          
Query: 53     gtctagctcttggggatgttcttgccgacaatcttcgcgggcgtgatgcggagaaggttc 112
              |||||| |||||||||||||||||||||| ||||| || || | ||||||||| ||||||
Sbjct: 112674 gtctagttcttggggatgttcttgccgacgatcttggcaggagcgatgcggaggaggttc 112733

                                                                          
Query: 113    ccctgcttcccaggaatggcccccttgatcatcacaactttgagatcattgtcgatcctg 172
              ||  ||||||| |||| ||| ||||||||||| |||||||| || || ||||||||| ||
Sbjct: 112734 ccgggcttccctggaacggcgcccttgatcatgacaactttcaggtcgttgtcgatcttg 112793

                                                                          
Query: 173    acgatcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttc 232
              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 112794 acgatcttgagcttcctgatcttggtcttggttcctcccatcctcccgggcatcttcttc 112853

                                                                          
Query: 233    cccttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctc 292
              |||||||||||||| || || || ||||| ||||||||||| || || ||||||||||||
Sbjct: 112854 cccttgtacacccgacccggcgtcgtcccggcaccgatcgatcccagagctctgtggctc 112913

                                                                    
Query: 293    ttggaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccacct 346
              ||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 112914 ttggagccgtgggtcatcagccctcgcttgaagttgtgcctcttgatgccacct 112967



 Score =  159 bits (80), Expect = 1e-35
 Identities = 161/188 (85%)
 Strand = Plus / Plus

                                                                          
Query: 343    accttggaatccctttccgatggatttggcggagacgtcgacgaggtcgccctccttgaa 402
              ||||||||| ||||| |||||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 113697 accttggaaccccttgccgatggacttgccggagatgtcgacgaggtcgccctccttgaa 113756

                                                                          
Query: 403    gagctcgttgaactcgagctcctggccagggtcgaaggcgtcgacggccaccagccggaa 462
               |  |||  ||| ||||||  |||||| |||||| |  ||||||||| |   || |||||
Sbjct: 113757 catgtcggcgaagtcgagcggctggccggggtcgtacccgtcgacggactggaggcggaa 113816

                                                                          
Query: 463    ttcctgcaggtggcgcagcggcggcgcgctagccttgccgaggtggcccagctccgggcg 522
               |||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||
Sbjct: 113817 ctcctgcaggtggcggagcggcggcgcgccggccttgccgaggtggccgagctccgggcg 113876

                      
Query: 523    ggtgagct 530
              ||||||||
Sbjct: 113877 ggtgagct 113884
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>dbj|AB010877.1| Nicotiana tabacum mRNA for chloroplast ribosomal protein L3,
           partial cds
          Length = 880

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 149/185 (80%)
 Strand = Plus / Minus

                                                                       
Query: 176 atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
           ||||||||||| || |||||  |||| || || ||||| || || ||||| ||||| |||
Sbjct: 660 atcttgagctttcttatctttctctttgtgcctcccattcttccaggcattttcttgccc 601

                                                                       
Query: 236 ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
           ||||| || ||||| || |||||||||||||| || || || ||   ||| || ||||| 
Sbjct: 600 ttgtatacacgcccgggtgttgtcccagcaccaattgatccaagttgtctatgactcttt 541

                                                                       
Query: 296 gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttggaatccc 355
           || |||||||||||  |||| | ||||||||| |||||||| || |||||||| ||||| 
Sbjct: 540 gatccgtgagtcatttgacccctcttgaagttatgcctctttataccaccttgaaatcct 481

                
Query: 356 tttcc 360
           |||||
Sbjct: 480 tttcc 476
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>ref|NM_129864.2| Arabidopsis thaliana structural constituent of ribosome AT2G43030
           mRNA, complete cds
          Length = 1031

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                       
Query: 176 atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
           ||||| |||||||| ||||| ||| | || || ||||| || || |||||||||||||| 
Sbjct: 757 atcttaagcttcctaatctttgtcctcgtccctcccattcttccaggcatcttcttccct 698

                                                                       
Query: 236 ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
           || || || |  || || || || |||||||| |||||||| |  ||||  || ||||||
Sbjct: 697 ttataaactcttcccggagtagtaccagcaccaatcgaacccaaagctcgatgactcttg 638

                                                                
Query: 296 gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttg 348
           ||||| ||||||||| |||| | |||||| |  ||||| |||||||| |||||
Sbjct: 637 gaaccatgagtcatctgacctctcttgaaatgatgccttttgattcctccttg 585
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>gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete
             sequence
          Length = 45714

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Plus

                                                                         
Query: 176   atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
             ||||| |||||||| ||||| ||| | || || ||||| || || |||||||||||||| 
Sbjct: 33127 atcttaagcttcctaatctttgtcctcgtccctcccattcttccaggcatcttcttccct 33186

                                                                         
Query: 236   ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
             || || || |  || || || || |||||||| |||||||| |  ||||  || ||||||
Sbjct: 33187 ttataaactcttcccggagtagtaccagcaccaatcgaacccaaagctcgatgactcttg 33246

                                                                  
Query: 296   gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttg 348
             ||||| ||||||||| |||| | |||||| |  ||||| |||||||| |||||
Sbjct: 33247 gaaccatgagtcatctgacctctcttgaaatgatgccttttgattcctccttg 33299
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>emb|BX820844.1|CNS0AA76 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH75ZB05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 920

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                       
Query: 176 atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
           ||||| |||||||| ||||| ||| | || || ||||| || || |||||||||||||| 
Sbjct: 702 atcttaagcttcctaatctttgtcctcgtccctcccattcttccaggcatcttcttccct 643

                                                                       
Query: 236 ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
           || || || |  || || || || |||||||| |||||||| |  ||||  || ||||||
Sbjct: 642 ttataaactcttcccggagtagtaccagcaccaatcgaacccaaagctcgatgactcttg 583

                                                                
Query: 296 gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttg 348
           ||||| ||||||||| |||| | |||||| |  ||||| |||||||| |||||
Sbjct: 582 gaaccatgagtcatctgacctctcttgaaatgatgccttttgattcctccttg 530
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>emb|BX819480.1|CNS0A8VF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB81ZF05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 921

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                       
Query: 176 atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
           ||||| |||||||| ||||| ||| | || || ||||| || || |||||||||||||| 
Sbjct: 701 atcttaagcttcctaatctttgtcctcgtccctcccattcttccaggcatcttcttccct 642

                                                                       
Query: 236 ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
           || || || |  || || || || |||||||| |||||||| |  ||||  || ||||||
Sbjct: 641 ttataaactcttcccggagtagtaccagcaccaatcgaacccaaagctcgatgactcttg 582

                                                                
Query: 296 gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttg 348
           ||||| ||||||||| |||| | |||||| |  ||||| |||||||| |||||
Sbjct: 581 gaaccatgagtcatctgacctctcttgaaatgatgccttttgattcctccttg 529
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>emb|BX819027.1|CNS0A91M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB39ZA01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 964

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                       
Query: 176 atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
           ||||| |||||||| ||||| ||| | || || ||||| || || |||||||||||||| 
Sbjct: 705 atcttaagcttcctaatctttgtcctcgtccctcccattcttccaggcatcttcttccct 646

                                                                       
Query: 236 ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
           || || || |  || || || || |||||||| |||||||| |  ||||  || ||||||
Sbjct: 645 ttataaactcttcccggagtagtaccagcaccaatcgaacccaaagctcgatgactcttg 586

                                                                
Query: 296 gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttg 348
           ||||| ||||||||| |||| | |||||| |  ||||| |||||||| |||||
Sbjct: 585 gaaccatgagtcatctgacctctcttgaaatgatgccttttgattcctccttg 533
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                           
Query: 239     tacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttggaa 298
               ||||| || ||||||||||| || |||||||| |||||  | ||||||||| | ||||||
Sbjct: 5051900 tacacgcggcctggggttgtacctgcaccgatagaaccaggcgctctgtggtttttggaa 5051959

                      
Query: 299     ccgtgag 305
               |||||||
Sbjct: 5051960 ccgtgag 5051966
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>emb|BX819375.1|CNS0A8SQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB72ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 876

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 ccagcaccgatcgaacctagggctctgtggctcttggaaccgtgagtcatcagaccacgc 319
           |||||||| |||||||| |  ||||  || ||||||||||| ||||||||| |||| | |
Sbjct: 616 ccagcaccaatcgaacccaaagctcgatgactcttggaaccatgagtcatctgacctctc 557

                                        
Query: 320 ttgaagttgtgcctcttgattccaccttg 348
           ||||| |  ||||| |||||||| |||||
Sbjct: 556 ttgaaatgatgccttttgattcctccttg 528
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>gb|AY085287.1| Arabidopsis thaliana clone 142861 mRNA, complete sequence
          Length = 945

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 136/173 (78%)
 Strand = Plus / Minus

                                                                       
Query: 176 atcttgagcttcctgatcttggtcttggttccgcccatcctcccgggcatcttcttcccc 235
           ||||| |||||||| ||||| ||| | || || ||||| || || |||||||||||||| 
Sbjct: 729 atcttaagcttcctaatctttgtcctcgtccctcccattcttccaggcatcttcttccct 670

                                                                       
Query: 236 ttgtacacccgccctggggttgtcccagcaccgatcgaacctagggctctgtggctcttg 295
           || || || |  || || || || |||||||| |||||||| |  ||||  || ||||||
Sbjct: 669 ttataaactcttcccggagtagtaccagcaccaatcgaacccaaagctcgatgactcttg 610

                                                                
Query: 296 gaaccgtgagtcatcagaccacgcttgaagttgtgcctcttgattccaccttg 348
           ||||| ||||||||  |||| | |||||| |  ||||| |||||||| |||||
Sbjct: 609 gaaccatgagtcatttgacctctcttgaaatgatgccttttgattcctccttg 557
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>ref|XM_481457.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1446

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 494 gccttgccgaggtggcccagctccgg 519
           ||||||||||||||||| ||||||||
Sbjct: 844 gccttgccgaggtggccaagctccgg 869
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>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09,
             complete sequence
          Length = 178320

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 494   gccttgccgaggtggcccagctccgg 519
             ||||||||||||||||| ||||||||
Sbjct: 24596 gccttgccgaggtggccaagctccgg 24571
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>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12,
             complete sequence
          Length = 187972

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 494   gccttgccgaggtggcccagctccgg 519
             ||||||||||||||||| ||||||||
Sbjct: 52339 gccttgccgaggtggccaagctccgg 52364
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>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 293757

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 7     cagaaaggaaacaaaacaaact 28
             ||||||||||||||||||||||
Sbjct: 32807 cagaaaggaaacaaaacaaact 32828
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>gb|AC159251.2| Mus musculus BAC clone RP24-113B8 from chromosome 12, complete
            sequence
          Length = 200896

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 15   aaacaaaacaaactcttacaag 36
            ||||||||||||||||||||||
Sbjct: 4401 aaacaaaacaaactcttacaag 4380
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 494      gccttgccgaggtggcccagctccgg 519
                ||||||||||||||||| ||||||||
Sbjct: 12715160 gccttgccgaggtggccaagctccgg 12715185



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 370     ggcggagacgtcgacgaggt 389
               ||||||||||||||||||||
Sbjct: 5088168 ggcggagacgtcgacgaggt 5088187
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>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0058D03
          Length = 184235

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 494   gccttgccgaggtggcccagctccgg 519
             ||||||||||||||||| ||||||||
Sbjct: 59155 gccttgccgaggtggccaagctccgg 59180
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>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0051M20
          Length = 152702

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 494    gccttgccgaggtggcccagctccgg 519
              ||||||||||||||||| ||||||||
Sbjct: 101129 gccttgccgaggtggccaagctccgg 101154
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>dbj|AK107492.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D03, full
           insert sequence
          Length = 1101

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 494 gccttgccgaggtggcccagctccgg 519
           ||||||||||||||||| ||||||||
Sbjct: 215 gccttgccgaggtggccaagctccgg 190
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>dbj|AK102896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112O06, full
           insert sequence
          Length = 983

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 494 gccttgccgaggtggcccagctccgg 519
           ||||||||||||||||| ||||||||
Sbjct: 181 gccttgccgaggtggccaagctccgg 156
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>emb|CT030643.5| Mouse DNA sequence from clone RP23-348M4 on chromosome 12, complete
             sequence
          Length = 209600

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    aaacaaaacaaactcttacaag 36
             ||||||||||||||||||||||
Sbjct: 30938 aaacaaaacaaactcttacaag 30959
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>emb|X58839.1|AVMVL1 Acholeplasma virus MV-L1 DNA for complete circular genome
          Length = 4491

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 5    aacagaaaggaaacaaaacaaa 26
            ||||||||||||||||||||||
Sbjct: 3000 aacagaaaggaaacaaaacaaa 3021
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>gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome 8, complete
            sequence
          Length = 176523

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 468  gcaggtggcgcagcggcggcg 488
            |||||||||||||||||||||
Sbjct: 2555 gcaggtggcgcagcggcggcg 2535
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>ref|NM_196215.1| Oryza sativa (japonica cultivar-group) putative retroelement
           (OSJNAa0019N10.17), mRNA
          Length = 2577

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 186 tcctgatcttggtcttggttc 206
           |||||||||||||||||||||
Sbjct: 824 tcctgatcttggtcttggttc 804
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>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene,
             complete cds
          Length = 63393

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     acagaaaggaaacaaaacaaa 26
             |||||||||||||||||||||
Sbjct: 25505 acagaaaggaaacaaaacaaa 25485
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 377     acgtcgacgaggtcgccctcc 397
               |||||||||||||||||||||
Sbjct: 2061305 acgtcgacgaggtcgccctcc 2061285
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>emb|AL353588.25| Human DNA sequence from clone RP11-444E17 on chromosome 6 Contains the
              gene for a novel protein (possible ortholog of mouse
              TCTE1), the gene for novel protein (KIAA1270), a novel
              gene, the 5' end of a novel gene (possible ortholog of
              rodent CDC5-like protein), the 3' part of a novel gene and
              three CpG islands, complete sequence
          Length = 145947

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      acagaaaggaaacaaaacaaa 26
              |||||||||||||||||||||
Sbjct: 134485 acagaaaggaaacaaaacaaa 134465
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>gb|AF239166.1| Sus scrofa methylenetetrahydrofolate reductase (MTHFR) mRNA,
           partial cds
          Length = 551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 209 cccatcctcccgggcatcttc 229
           |||||||||||||||||||||
Sbjct: 423 cccatcctcccgggcatcttc 443
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>gb|AC124213.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0019N10, from chromosome 10, complete sequence
          Length = 148704

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 186   tcctgatcttggtcttggttc 206
             |||||||||||||||||||||
Sbjct: 81998 tcctgatcttggtcttggttc 81978
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 186      tcctgatcttggtcttggttc 206
                |||||||||||||||||||||
Sbjct: 11936316 tcctgatcttggtcttggttc 11936296
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>gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, complete sequence
          Length = 219070

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    gcaggtggcgcagcggcggcg 488
              |||||||||||||||||||||
Sbjct: 174184 gcaggtggcgcagcggcggcg 174164
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>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence
          Length = 229414

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    gcaggtggcgcagcggcggcg 488
              |||||||||||||||||||||
Sbjct: 206391 gcaggtggcgcagcggcggcg 206371
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 186      tcctgatcttggtcttggttc 206
                |||||||||||||||||||||
Sbjct: 11943656 tcctgatcttggtcttggttc 11943636
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>emb|BX088546.7| Mouse DNA sequence from clone RP23-96D6 on chromosome X, complete
             sequence
          Length = 109456

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     cagaaaggaaacaaaacaaac 27
             |||||||||||||||||||||
Sbjct: 49189 cagaaaggaaacaaaacaaac 49169
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>emb|AL645647.8| Mouse DNA sequence from clone RP23-332L17 on chromosome 11, complete
             sequence
          Length = 147804

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 268   gatcgaacctagggctctgtg 288
             |||||||||||||||||||||
Sbjct: 30265 gatcgaacctagggctctgtg 30245
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>gb|AC110553.10| Mus musculus chromosome 3, clone RP23-248D8, complete sequence
          Length = 206620

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    atcgaacctagggctctgtg 288
              ||||||||||||||||||||
Sbjct: 110390 atcgaacctagggctctgtg 110371
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>ref|XM_463578.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  ccaccttggaatccctttcc 360
            ||||||||||||||||||||
Sbjct: 1481 ccaccttggaatccctttcc 1500
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>gb|AC161434.2| Mus musculus chromosome 3, clone RP23-7K18, complete sequence
          Length = 195815

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    atcgaacctagggctctgtg 288
              ||||||||||||||||||||
Sbjct: 172925 atcgaacctagggctctgtg 172906
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>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 232401

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    tctagctcttggggatgttcttgc 77
             |||||||||||||||| |||||||
Sbjct: 16462 tctagctcttggggattttcttgc 16485
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>gb|AC140247.3| Mus musculus BAC clone RP23-469I15 from chromosome 9, complete sequence
          Length = 189336

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     agcacaggtctagctcttgg 65
              ||||||||||||||||||||
Sbjct: 171593 agcacaggtctagctcttgg 171612
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>gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosome 14, complete sequence
          Length = 200350

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      cagaaaggaaacaaaacaaa 26
              ||||||||||||||||||||
Sbjct: 125957 cagaaaggaaacaaaacaaa 125976
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>ref|XM_545722.2| PREDICTED: Canis familiaris similar to toll-like receptor 5
            (LOC488605), mRNA
          Length = 3282

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 454  cagccggaattcctgcaggtggcgcagc 481
            |||||||| ||||||||||||| |||||
Sbjct: 1083 cagccggagttcctgcaggtggggcagc 1056
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>gb|AC127318.4| Mus musculus BAC clone RP23-228J12 from chromosome 9, complete sequence
          Length = 168789

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agcacaggtctagctcttgg 65
             ||||||||||||||||||||
Sbjct: 50009 agcacaggtctagctcttgg 50028
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>ref|XM_538452.2| PREDICTED: Canis familiaris similar to mitogen-activated protein
            kinase kinase kinase kinase 4 isoform 2 (LOC481331), mRNA
          Length = 4139

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    cagaaaggaaacaaaacaaa 26
            ||||||||||||||||||||
Sbjct: 4057 cagaaaggaaacaaaacaaa 4038
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>emb|AL162424.20| Human DNA sequence from clone RP11-498E2 on chromosome 9 Contains the
             5' end of the PTGS1 gene for prostaglandin-endoperoxide
             synthase 1 (prostaglandin G/H synthase and
             cyclooxygenase), the gene for mitochondrial ribosome
             recycling factor (MRRF) (RRF MRFF MTRRF), a novel gene
             (MGC2734), the LHX6 gene for LIM-homeobox protein 6, the
             3' end of a novel gene (LOC254956) and five CpG islands,
             complete sequence
          Length = 223020

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   aggttcccctgcttcccagg 126
             ||||||||||||||||||||
Sbjct: 29152 aggttcccctgcttcccagg 29133
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>emb|AL133378.16| Human DNA sequence from clone RP1-91B17 on chromosome 6q13-14.3
             Contains part of the BAI3 gene for brain-specific
             angiogenesis inhibitor 3, complete sequence
          Length = 113826

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     aacagaaaggaaacaaaacaaact 28
             ||||||||||||| ||||||||||
Sbjct: 46685 aacagaaaggaaaaaaaacaaact 46708
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>emb|X68594.1|PAXCPP Pseudomonas aeruginosa xcpP and xcpQ and orfx genes
          Length = 3923

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  ttggtcttggttccgcccat 213
            ||||||||||||||||||||
Sbjct: 2155 ttggtcttggttccgcccat 2136
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>gb|BC063194.1| Xenopus tropicalis hypothetical protein MGC75601, mRNA (cDNA clone
           MGC:75601 IMAGE:5379234), complete cds
          Length = 1964

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 ctttgagatcattgtcgatc 169
           ||||||||||||||||||||
Sbjct: 614 ctttgagatcattgtcgatc 595
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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   ccaccttggaatccctttcc 360
             ||||||||||||||||||||
Sbjct: 38140 ccaccttggaatccctttcc 38159
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 434     tcgaaggcgtcgacggccac 453
               ||||||||||||||||||||
Sbjct: 2800674 tcgaaggcgtcgacggccac 2800693
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>gb|AY228160.1| Rattus norvegicus 4.5S RNA(H) repeat region, partial sequence
          Length = 2341

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    gaaaggaaacaaaacaaact 28
            ||||||||||||||||||||
Sbjct: 2315 gaaaggaaacaaaacaaact 2296
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 341      ccaccttggaatccctttcc 360
                ||||||||||||||||||||
Sbjct: 39483698 ccaccttggaatccctttcc 39483717



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       aacagaaaggaaacaaaaca 24
               ||||||||||||||||||||
Sbjct: 7039805 aacagaaaggaaacaaaaca 7039786
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>gb|AE004734.1| Pseudomonas aeruginosa PAO1, section 295 of 529 of the complete genome
          Length = 11120

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ttggtcttggttccgcccat 213
             ||||||||||||||||||||
Sbjct: 10254 ttggtcttggttccgcccat 10235
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>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aacagaaaggaaacaaaaca 24
              ||||||||||||||||||||
Sbjct: 100196 aacagaaaggaaacaaaaca 100215
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   ccaccttggaatccctttcc 360
             ||||||||||||||||||||
Sbjct: 58712 ccaccttggaatccctttcc 58731
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aacagaaaggaaacaaaaca 24
             ||||||||||||||||||||
Sbjct: 27385 aacagaaaggaaacaaaaca 27366
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>ref|NM_203841.1| Xenopus tropicalis hypothetical protein MGC75601 (MGC75601), mRNA
          Length = 1964

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 ctttgagatcattgtcgatc 169
           ||||||||||||||||||||
Sbjct: 614 ctttgagatcattgtcgatc 595
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>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0547A06
          Length = 150922

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    ggcggagacgtcgacgaggt 389
              ||||||||||||||||||||
Sbjct: 125725 ggcggagacgtcgacgaggt 125744
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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 3       acaacagaaaggaaacaaaacaaa 26
               |||||| |||||||||||||||||
Sbjct: 1190969 acaacaaaaaggaaacaaaacaaa 1190946
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 307   catcagaccacgcttgaagttgtg 330
             |||| |||||||||||||||||||
Sbjct: 73759 catcggaccacgcttgaagttgtg 73736
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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   ggcggagacgtcgacgaggt 389
             ||||||||||||||||||||
Sbjct: 37932 ggcggagacgtcgacgaggt 37951
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>dbj|AK103626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N22, full
            insert sequence
          Length = 2356

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  ccaccttggaatccctttcc 360
            ||||||||||||||||||||
Sbjct: 1541 ccaccttggaatccctttcc 1560
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>emb|CR848095.2| Xenopus tropicalis finished cDNA, clone TGas120a24
          Length = 1869

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 ctttgagatcattgtcgatc 169
           ||||||||||||||||||||
Sbjct: 542 ctttgagatcattgtcgatc 523
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ctcccgggcatcttcttccc 234
             ||||||||||||||||||||
Sbjct: 19144 ctcccgggcatcttcttccc 19163
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>gb|AY345225.2| Arsenite-oxidising bacterium NT-26 AroB (aroB), AroA (aroA), AroC
            (aroC), and MoeA1 (moeA1) genes, complete cds
          Length = 6452

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  tcgacgaggtcgccctcctt 399
            ||||||||||||||||||||
Sbjct: 3512 tcgacgaggtcgccctcctt 3493
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>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete
             sequence
          Length = 36905

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   gtggcccagctccgggcggg 524
             ||||||||||||||||||||
Sbjct: 30167 gtggcccagctccgggcggg 30148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,018,061
Number of Sequences: 3902068
Number of extensions: 5018061
Number of successful extensions: 102873
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102266
Number of HSP's gapped (non-prelim): 593
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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