>RL35A_ARATH (P51422) 60S ribosomal protein L35a|
          Length = 111

 Score =  194 bits (494), Expect = 1e-49
 Identities = 88/111 (79%), Positives = 103/111 (92%)
 Frame = -3

Query: 476 VKGRTGQRVRLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAK 297
           +KGR G+RVRLYVRGT+LG+KRSKSNQY NTSLVQIEGVNT+E+V WY GKRLAY+YKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 296 TKSNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
           TK NG+HYRC+WGK+TRPHGNSGVVR++F SNLP +SMG +VRVFMYPS+I
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

>RL33A_YEAST (P05744) 60S ribosomal protein L33-A (L37A) (YL37) (RP47)|
          Length = 106

 Score =  121 bits (304), Expect = 1e-27
 Identities = 56/102 (54%), Positives = 76/102 (74%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYR 270
           RLYV+G  L ++RSK     N SL++IEGV T +D  +Y GKR+AYVY+A  +  G+  R
Sbjct: 5   RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIR 64

Query: 269 CLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            +WGK+TR HGNSGVVRA F++NLPA++ G  VR+F+YPS+I
Sbjct: 65  VMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 106

>RL33B_YEAST (P41056) 60S ribosomal protein L33-B (L37B) (YL37) (RP47)|
          Length = 106

 Score =  120 bits (300), Expect = 3e-27
 Identities = 55/102 (53%), Positives = 76/102 (74%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYR 270
           RLYV+G  L ++RSK     N SL++IEGV T ++  +Y GKR+AYVY+A  +  G+  R
Sbjct: 5   RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIR 64

Query: 269 CLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            +WGK+TR HGNSGVVRA F++NLPA++ G  VR+F+YPS+I
Sbjct: 65  VMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 106

>RL35A_CAEEL (P49180) 60S ribosomal protein L35a|
          Length = 123

 Score =  116 bits (290), Expect = 5e-26
 Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 6/108 (5%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKA--KTKSNG-- 282
           RLYV+    GFKR    Q E+TSL+++EGV  KED  +Y GKR+ Y+YKA  KT   G  
Sbjct: 16  RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT 75

Query: 281 --THYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
             T  R +WGKITRPHGN+G VRA+F  N+P  ++G+++RV +YPS+I
Sbjct: 76  VATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 123

>RL35A_XENLA (P02434) 60S ribosomal protein L35a (L32)|
          Length = 110

 Score =  113 bits (283), Expect = 3e-25
 Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ + T  G+KR   NQ E+T+L++IEGV  +++  +Y GKR AYVYKAK        K
Sbjct: 4   RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F+SNLPA+++G ++RV +YPS I
Sbjct: 64  PNRT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110

>RL35A_RAT (P04646) 60S ribosomal protein L35a|
          Length = 110

 Score =  110 bits (276), Expect = 2e-24
 Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ +    G+KR   NQ E+T+L++IEGV  +++  +Y GKR AYVYKAK        K
Sbjct: 4   RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F+SNLPA+++G ++RV +YPS I
Sbjct: 64  PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110

>RL35A_MOUSE (O55142) 60S ribosomal protein L35a|
          Length = 110

 Score =  110 bits (276), Expect = 2e-24
 Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ +    G+KR   NQ E+T+L++IEGV  +++  +Y GKR AYVYKAK        K
Sbjct: 4   RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F+SNLPA+++G ++RV +YPS I
Sbjct: 64  PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110

>RL35A_PONPY (Q5R8K6) 60S ribosomal protein L35a|
          Length = 110

 Score =  110 bits (275), Expect = 3e-24
 Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ +    G+KR   NQ E+T+L++IEGV  +++  +Y GKR AYVYKAK        K
Sbjct: 4   RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F+SNLPA+++G ++RV +YPS I
Sbjct: 64  PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110

>RL35A_MACFA (P61272) 60S ribosomal protein L35a|
          Length = 110

 Score =  110 bits (275), Expect = 3e-24
 Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ +    G+KR   NQ E+T+L++IEGV  +++  +Y GKR AYVYKAK        K
Sbjct: 4   RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F+SNLPA+++G ++RV +YPS I
Sbjct: 64  PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110

>RL35A_HUMAN (P18077) 60S ribosomal protein L35a|
          Length = 110

 Score =  110 bits (275), Expect = 3e-24
 Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ +    G+KR   NQ E+T+L++IEGV  +++  +Y GKR AYVYKAK        K
Sbjct: 4   RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F+SNLPA+++G ++RV +YPS I
Sbjct: 64  PNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110

>RL33B_SCHPO (Q9USG6) 60S ribosomal protein L33-B (L37B)|
          Length = 108

 Score =  110 bits (274), Expect = 4e-24
 Identities = 52/102 (50%), Positives = 71/102 (69%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYR 270
           RLYV+   L F+RSK   +  TS+V+IEG ++KE+  +Y GKR+ YVYK+     G+  R
Sbjct: 7   RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIR 66

Query: 269 CLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            +WG I RPHGNSG VRA+F  NLPA++ G  +RV +YPS+I
Sbjct: 67  VIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108

>RL33A_SCHPO (Q9USX4) 60S ribosomal protein L33-A (L37A)|
          Length = 108

 Score =  109 bits (272), Expect = 6e-24
 Identities = 50/102 (49%), Positives = 72/102 (70%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYR 270
           RLYV+   L F+RSK   +  TSLV+IEG ++KE+  +Y GKR+ +VYK+     G+  R
Sbjct: 7   RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIR 66

Query: 269 CLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            +WG ++RPHGNSGVVRA+F  NLP ++ G  +RV +YPS++
Sbjct: 67  VIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108

>RL35A_ICTPU (Q90YT3) 60S ribosomal protein L35a|
          Length = 110

 Score =  107 bits (267), Expect = 2e-23
 Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 7/109 (6%)
 Frame = -3

Query: 449 RLYVRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKT-------K 291
           RL+ +    G+KR   NQ E+T+L+++EGV ++ +V +Y GKR AYVYKAK        K
Sbjct: 4   RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGK 63

Query: 290 SNGTHYRCLWGKITRPHGNSGVVRAQFKSNLPAESMGRKVRVFMYPSSI 144
            N T  R +WGK+TR HGNSG+VRA+F SNLP +++G ++RV +YPS +
Sbjct: 64  PNKT--RVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110

>RL35A_PYRWO (P20299) 50S ribosomal protein L35Ae|
          Length = 87

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 54/92 (58%)
 Frame = -3

Query: 440 VRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYRCLW 261
           ++G +L ++RSK NQ+ N  +++   VN++E+ +   G+ + +    K+ S     + L 
Sbjct: 3   IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLW----KSPSG----KILK 54

Query: 260 GKITRPHGNSGVVRAQFKSNLPAESMGRKVRV 165
           GKI R HG  G VRA+F+  LP +++G  V +
Sbjct: 55  GKIVRVHGTKGAVRARFEKGLPGQALGDYVEI 86

>RL35A_PYRFU (Q8TZV6) 50S ribosomal protein L35Ae|
          Length = 87

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 54/92 (58%)
 Frame = -3

Query: 440 VRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYRCLW 261
           ++G +L ++RSK NQ+ N  +++   VN++E+ +   G+ + +    K+ S     + L 
Sbjct: 3   IKGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLW----KSPSG----KILK 54

Query: 260 GKITRPHGNSGVVRAQFKSNLPAESMGRKVRV 165
           GKI R HG  G VRA+F+  LP +++G  V +
Sbjct: 55  GKIVRVHGTKGAVRARFEKGLPGQALGDYVEI 86

>RL35A_PYRAB (Q9V1P2) 50S ribosomal protein L35Ae|
          Length = 87

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 54/92 (58%)
 Frame = -3

Query: 440 VRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYRCLW 261
           ++G +L ++RSK NQ+ N  +++   VN++E+ +   G+ + +    K+ S     + L 
Sbjct: 3   IKGVVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGRLVIW----KSPSG----KLLK 54

Query: 260 GKITRPHGNSGVVRAQFKSNLPAESMGRKVRV 165
           GKI R HG  G VRA+F+  LP +++G  V +
Sbjct: 55  GKIVRVHGTKGAVRARFEKGLPGQALGDYVEI 86

>RL35A_PYRHO (O74099) 50S ribosomal protein L35Ae|
          Length = 87

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/92 (31%), Positives = 54/92 (58%)
 Frame = -3

Query: 440 VRGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYRCLW 261
           ++G +L ++RSK NQ+ N  +++   +N++E+ +   G+ + +    K+ S     + L 
Sbjct: 3   IKGVVLSYRRSKENQHTNVMIIKPLDINSREEASKLIGRLVVW----KSPSG----KVLK 54

Query: 260 GKITRPHGNSGVVRAQFKSNLPAESMGRKVRV 165
           GKI R HG  G VRA+F+  LP +++G  V +
Sbjct: 55  GKIVRVHGTRGAVRARFEKGLPGQALGDYVEI 86

>RL35A_METKA (Q8TYY6) 50S ribosomal protein L35Ae|
          Length = 90

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/89 (26%), Positives = 46/89 (51%)
 Frame = -3

Query: 437 RGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGGKRLAYVYKAKTKSNGTHYRCLWG 258
           RG I+ ++  +  Q     +++ EGV ++ + A   GK + + +    K        + G
Sbjct: 6   RGVIVNYRMGRHTQDPRQCIIEFEGVESRSEAAQLIGKEVIWKHPETGK-------VIRG 58

Query: 257 KITRPHGNSGVVRAQFKSNLPAESMGRKV 171
           K+   HGN+G VR +F+  LP +++G +V
Sbjct: 59  KVVDTHGNNGAVRVRFERGLPGQALGTEV 87

>RL35A_AERPE (Q9Y9G4) 50S ribosomal protein L35Ae|
          Length = 133

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = -3

Query: 437 RGTILGFKRSKSNQYENTSLVQIEGVNTKEDVAWYGG-----KRLAYVYKAKTKSNGTHY 273
           RG +LG++R  + QY   +LV++   + ++   +  G      R   VYK          
Sbjct: 44  RGVVLGYRRGTNTQYPQHALVKLLLDDPRKAGLYVSGIAFYRDRYGNVYK---------- 93

Query: 272 RCLWGKITRPHG-NSGVVRAQFKSNLPAESMGRKVRV 165
               G++ R HG   GVV  +F   LP ++ G  V V
Sbjct: 94  ----GRVLRLHGRRGGVVVVKFNPPLPGQATGGVVEV 126

>DNAA_COREF (Q8FUL7) Chromosomal replication initiator protein dnaA|
          Length = 573

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
 Frame = -2

Query: 441 RQGHHPRLQEVQVEPVREHVAGADRGGEHQGGRGVVRRQAPGVRVQGQDQ---------- 292
           +QG HP  QEV+      H  G  +  +HQ        QAPG  V G ++          
Sbjct: 131 QQGQHPVQQEVRAHAPAPHQQGQHQAAQHQ----PPANQAPGQYVVGGERGQASQSAGAW 186

Query: 291 EQRHPLP 271
           EQ H +P
Sbjct: 187 EQTHSMP 193

>Y167_RICCN (Q92JA0) UPF0176 protein RC0167|
          Length = 247

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = -3

Query: 449 RLYVRGTIL----GFKRSKSNQYENTSLV 375
           R YVRGTIL    GF  S S  YEN +LV
Sbjct: 32  RKYVRGTILLANEGFNGSFSGSYENVNLV 60

>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
 Frame = -2

Query: 441 RQGHHPRLQEVQVEPVREHVAGADRGGEHQGGRGV---VRRQAPG-----VRVQGQ---- 298
           +QG H + ++ Q    ++  +G  +GG  QG +G     +++ PG      + QGQ    
Sbjct: 325 QQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQPNQTQSQGQYQSR 384

Query: 297 ---DQEQRHPLPLP 265
               Q+Q  PLPLP
Sbjct: 385 GPPQQQQAAPLPLP 398


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,293,172
Number of Sequences: 219361
Number of extensions: 1117525
Number of successful extensions: 3568
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3549
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)