| Clone Name | rbags36d20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009279.1| Triticum aestivum clone wlk8.pk0021.b11:fis, full insert mRNA sequence Length = 619 Score = 63.9 bits (32), Expect = 1e-07 Identities = 44/47 (93%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 39 actaaatnagcttatagaccaaccgactttcaggattatttgtaccc 85 ||||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct: 520 actaaattagct-atagaccaaccgacttccaggattatttgtaccc 475
>gb|AC122562.8| Mus musculus chromosome 5, clone RP24-103L16, complete sequence Length = 172210 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 gaggttgcaaaaaaccacacacta 42 |||||||| ||||||||||||||| Sbjct: 131971 gaggttgctaaaaaccacacacta 131994
>gb|AC102896.9| Mus musculus chromosome 5, clone RP24-353A8, complete sequence Length = 156422 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 gaggttgcaaaaaaccacacacta 42 |||||||| ||||||||||||||| Sbjct: 124657 gaggttgctaaaaaccacacacta 124634
>ref|NM_112646.1| Arabidopsis thaliana PDE321; oligopeptide transporter AT3G17650 (PDE321) mRNA, complete cds Length = 2396 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctttcaggattatttgtac 83 ||||||||||||||||||| Sbjct: 1196 ctttcaggattatttgtac 1214
>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0015A05, complete sequence Length = 127330 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 85007 gttgcaaaaaaccacacac 85025
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22, complete sequence Length = 173903 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 46641 gttgcaaaaaaccacacac 46659
>gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, complete sequence Length = 150088 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 aaccgactttcaggattat 77 ||||||||||||||||||| Sbjct: 73884 aaccgactttcaggattat 73902
>gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome 13, complete sequence Length = 200156 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 tttgtacccaacactaagc 95 ||||||||||||||||||| Sbjct: 133627 tttgtacccaacactaagc 133609
>gb|AY515563.1| Arabidopsis thaliana metal-nicotianamine transporter YSL5 (At3g17650) mRNA, complete cds Length = 2337 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctttcaggattatttgtac 83 ||||||||||||||||||| Sbjct: 1166 ctttcaggattatttgtac 1184
>gb|BT001087.1| Arabidopsis thaliana At3g17650/MKP6_20 mRNA, complete cds Length = 2145 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctttcaggattatttgtac 83 ||||||||||||||||||| Sbjct: 1087 ctttcaggattatttgtac 1105
>gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, complete sequence Length = 151353 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 tatttgtacccaacactaa 93 ||||||||||||||||||| Sbjct: 114499 tatttgtacccaacactaa 114481
>gb|AY057503.1| Arabidopsis thaliana AT3g17650/MKP6_20 mRNA, complete cds Length = 2397 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctttcaggattatttgtac 83 ||||||||||||||||||| Sbjct: 1196 ctttcaggattatttgtac 1214
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 2876382 gttgcaaaaaaccacacac 2876364
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 cgctttcaaaactgctcgg 131 ||||||||||||||||||| Sbjct: 1975304 cgctttcaaaactgctcgg 1975286
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 2600121 gttgcaaaaaaccacacac 2600139
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 24507131 gttgcaaaaaaccacacac 24507149
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 2552386 gttgcaaaaaaccacacac 2552368
>emb|BX822869.1|CNS0A7U8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB6ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2213 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctttcaggattatttgtac 83 ||||||||||||||||||| Sbjct: 1148 ctttcaggattatttgtac 1166
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 106807 gttgcaaaaaaccacacac 106789
>gb|AC136966.2| Bos taurus clone RP42-221D7, complete sequence Length = 158113 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gactttcaggattatttgt 81 ||||||||||||||||||| Sbjct: 13493 gactttcaggattatttgt 13475
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 2161 gttgcaaaaaaccacacac 2143
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 cgctttcaaaactgctcgg 131 ||||||||||||||||||| Sbjct: 59601 cgctttcaaaactgctcgg 59583
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 135337 gttgcaaaaaaccacacac 135355
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 21232 gttgcaaaaaaccacacac 21250
>dbj|AB022219.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MKP6 Length = 83233 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctttcaggattatttgtac 83 ||||||||||||||||||| Sbjct: 57010 ctttcaggattatttgtac 57028
>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete sequence Length = 255133 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 tttgtacccaacactaagc 95 ||||||||||||||||||| Sbjct: 216472 tttgtacccaacactaagc 216454
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 2876326 gttgcaaaaaaccacacac 2876308
>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145661 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 gttgcaaaaaaccacacac 40 ||||||||||||||||||| Sbjct: 139720 gttgcaaaaaaccacacac 139738
>dbj|AP005365.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB52G8, complete sequence Length = 103221 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 tatttgtacccaacactaa 93 ||||||||||||||||||| Sbjct: 91217 tatttgtacccaacactaa 91235
>gb|AC122494.4| Mus musculus BAC clone RP24-397D6 from 3, complete sequence Length = 133468 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 tacccaacactaagcaatt 99 ||||||||||||||||||| Sbjct: 120466 tacccaacactaagcaatt 120448
>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence Length = 260188 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 caaaaaaccacacactaaa 44 ||||||||||||||||||| Sbjct: 129319 caaaaaaccacacactaaa 129301 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 851,169 Number of Sequences: 3902068 Number of extensions: 851169 Number of successful extensions: 72812 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72680 Number of HSP's gapped (non-prelim): 132 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)