ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009279.1| Triticum aestivum clone wlk8.pk0021.b11:fis, full... 64 1e-07
2gb|AC122562.8| Mus musculus chromosome 5, clone RP24-103L16, com... 40 1.6
3gb|AC102896.9| Mus musculus chromosome 5, clone RP24-353A8, comp... 40 1.6
4ref|NM_112646.1| Arabidopsis thaliana PDE321; oligopeptide trans... 38 6.2
5gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
6gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
7gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, compl... 38 6.2
8gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome... 38 6.2
9gb|AY515563.1| Arabidopsis thaliana metal-nicotianamine transpor... 38 6.2
10gb|BT001087.1| Arabidopsis thaliana At3g17650/MKP6_20 mRNA, comp... 38 6.2
11gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, compl... 38 6.2
12gb|AY057503.1| Arabidopsis thaliana AT3g17650/MKP6_20 mRNA, comp... 38 6.2
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
18emb|BX822869.1|CNS0A7U8 Arabidopsis thaliana Full-length cDNA Co... 38 6.2
19dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
20gb|AC136966.2| Bos taurus clone RP42-221D7, complete sequence 38 6.2
21dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
22dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
23dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
24dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
25dbj|AB022219.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 6.2
26emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chro... 38 6.2
27gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.2
28emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb... 38 6.2
29dbj|AP005365.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 6.2
30gb|AC122494.4| Mus musculus BAC clone RP24-397D6 from 3, complet... 38 6.2
31gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, comp... 38 6.2

>gb|BT009279.1| Triticum aestivum clone wlk8.pk0021.b11:fis, full insert mRNA
           sequence
          Length = 619

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 44/47 (93%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                          
Query: 39  actaaatnagcttatagaccaaccgactttcaggattatttgtaccc 85
           ||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct: 520 actaaattagct-atagaccaaccgacttccaggattatttgtaccc 475



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>gb|AC122562.8| Mus musculus chromosome 5, clone RP24-103L16, complete sequence
          Length = 172210

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     gaggttgcaaaaaaccacacacta 42
              |||||||| |||||||||||||||
Sbjct: 131971 gaggttgctaaaaaccacacacta 131994



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>gb|AC102896.9| Mus musculus chromosome 5, clone RP24-353A8, complete sequence
          Length = 156422

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     gaggttgcaaaaaaccacacacta 42
              |||||||| |||||||||||||||
Sbjct: 124657 gaggttgctaaaaaccacacacta 124634



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>ref|NM_112646.1| Arabidopsis thaliana PDE321; oligopeptide transporter AT3G17650
            (PDE321) mRNA, complete cds
          Length = 2396

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   ctttcaggattatttgtac 83
            |||||||||||||||||||
Sbjct: 1196 ctttcaggattatttgtac 1214



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>gb|AC124142.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0015A05, complete sequence
          Length = 127330

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    gttgcaaaaaaccacacac 40
             |||||||||||||||||||
Sbjct: 85007 gttgcaaaaaaccacacac 85025



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>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J22, complete sequence
          Length = 173903

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    gttgcaaaaaaccacacac 40
             |||||||||||||||||||
Sbjct: 46641 gttgcaaaaaaccacacac 46659



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>gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, complete sequence
          Length = 150088

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    aaccgactttcaggattat 77
             |||||||||||||||||||
Sbjct: 73884 aaccgactttcaggattat 73902



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>gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome 13, complete sequence
          Length = 200156

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     tttgtacccaacactaagc 95
              |||||||||||||||||||
Sbjct: 133627 tttgtacccaacactaagc 133609



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>gb|AY515563.1| Arabidopsis thaliana metal-nicotianamine transporter YSL5 (At3g17650)
            mRNA, complete cds
          Length = 2337

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   ctttcaggattatttgtac 83
            |||||||||||||||||||
Sbjct: 1166 ctttcaggattatttgtac 1184



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>gb|BT001087.1| Arabidopsis thaliana At3g17650/MKP6_20 mRNA, complete cds
          Length = 2145

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   ctttcaggattatttgtac 83
            |||||||||||||||||||
Sbjct: 1087 ctttcaggattatttgtac 1105



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>gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, complete sequence
          Length = 151353

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     tatttgtacccaacactaa 93
              |||||||||||||||||||
Sbjct: 114499 tatttgtacccaacactaa 114481



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>gb|AY057503.1| Arabidopsis thaliana AT3g17650/MKP6_20 mRNA, complete cds
          Length = 2397

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   ctttcaggattatttgtac 83
            |||||||||||||||||||
Sbjct: 1196 ctttcaggattatttgtac 1214



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      gttgcaaaaaaccacacac 40
               |||||||||||||||||||
Sbjct: 2876382 gttgcaaaaaaccacacac 2876364



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 113     cgctttcaaaactgctcgg 131
               |||||||||||||||||||
Sbjct: 1975304 cgctttcaaaactgctcgg 1975286



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 22      gttgcaaaaaaccacacac 40
               |||||||||||||||||||
Sbjct: 2600121 gttgcaaaaaaccacacac 2600139



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 22       gttgcaaaaaaccacacac 40
                |||||||||||||||||||
Sbjct: 24507131 gttgcaaaaaaccacacac 24507149



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      gttgcaaaaaaccacacac 40
               |||||||||||||||||||
Sbjct: 2552386 gttgcaaaaaaccacacac 2552368



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>emb|BX822869.1|CNS0A7U8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB6ZB02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2213

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   ctttcaggattatttgtac 83
            |||||||||||||||||||
Sbjct: 1148 ctttcaggattatttgtac 1166



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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416D03
          Length = 157112

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     gttgcaaaaaaccacacac 40
              |||||||||||||||||||
Sbjct: 106807 gttgcaaaaaaccacacac 106789



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>gb|AC136966.2| Bos taurus clone RP42-221D7, complete sequence
          Length = 158113

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    gactttcaggattatttgt 81
             |||||||||||||||||||
Sbjct: 13493 gactttcaggattatttgt 13475



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>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0434B04
          Length = 167029

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   gttgcaaaaaaccacacac 40
            |||||||||||||||||||
Sbjct: 2161 gttgcaaaaaaccacacac 2143



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>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0495H05
          Length = 205595

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 113   cgctttcaaaactgctcgg 131
             |||||||||||||||||||
Sbjct: 59601 cgctttcaaaactgctcgg 59583



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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1792_D02
          Length = 141649

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     gttgcaaaaaaccacacac 40
              |||||||||||||||||||
Sbjct: 135337 gttgcaaaaaaccacacac 135355



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>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1014_H03
          Length = 132696

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    gttgcaaaaaaccacacac 40
             |||||||||||||||||||
Sbjct: 21232 gttgcaaaaaaccacacac 21250



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>dbj|AB022219.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MKP6
          Length = 83233

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    ctttcaggattatttgtac 83
             |||||||||||||||||||
Sbjct: 57010 ctttcaggattatttgtac 57028



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>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete
              sequence
          Length = 255133

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     tttgtacccaacactaagc 95
              |||||||||||||||||||
Sbjct: 216472 tttgtacccaacactaagc 216454



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      gttgcaaaaaaccacacac 40
               |||||||||||||||||||
Sbjct: 2876326 gttgcaaaaaaccacacac 2876308



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>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145661

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     gttgcaaaaaaccacacac 40
              |||||||||||||||||||
Sbjct: 139720 gttgcaaaaaaccacacac 139738



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>dbj|AP005365.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB52G8, complete
             sequence
          Length = 103221

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 75    tatttgtacccaacactaa 93
             |||||||||||||||||||
Sbjct: 91217 tatttgtacccaacactaa 91235



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>gb|AC122494.4| Mus musculus BAC clone RP24-397D6 from 3, complete sequence
          Length = 133468

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     tacccaacactaagcaatt 99
              |||||||||||||||||||
Sbjct: 120466 tacccaacactaagcaatt 120448



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>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence
          Length = 260188

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     caaaaaaccacacactaaa 44
              |||||||||||||||||||
Sbjct: 129319 caaaaaaccacacactaaa 129301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 851,169
Number of Sequences: 3902068
Number of extensions: 851169
Number of successful extensions: 72812
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72680
Number of HSP's gapped (non-prelim): 132
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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