>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain|
           protein)
          Length = 292

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 126 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 242
           +L+   PG PGL  +HR     +P +S PRL     ASA+ P P
Sbjct: 199 SLLALTPGLPGLPASHRGTSLVDPRNSSPRLNPMPSASASSPLP 242

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
 Frame = -3

Query: 242  RLRPRRAGDAGGRQPRQAV------------HGVSVRLRQAGKPRNVDHQRLHMA----- 114
            R RPRR    GGR  R+A              G SV L +A +P     QRL        
Sbjct: 2290 RRRPRRRRGGGGRALRRAPGPREPLAQDSPGRGPSVCLARAARPAGP--QRLLPGPRTGQ 2347

Query: 113  SPRGRARVRPAACLQASHRGVPWSYP 36
            +PR R   +PA  +Q   RG+  S P
Sbjct: 2348 APRARLPQKPARSVQRERRGLVLSPP 2373

>ARPA_ECOLI (P23325) Ankyrin-repeat protein A (Ankyrin-like regulatory protein)|
          Length = 728

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -1

Query: 178 FLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAE 53
           FL +S K  N  T I++A   P+LAA    D ++V+K L+A+
Sbjct: 435 FLAISRKDKNVVTSILNAL--PKLAATHHLDNEQVYKFLSAK 474

>VAX2_HUMAN (Q9UIW0) Ventral anterior homeobox 2|
          Length = 290

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 126 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 242
           +L+   P  PGL  +HR     +P +S PRL     ASA+ P P
Sbjct: 199 SLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLP 242

>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
           bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
           protein) (Dystonia musculorum protein) (Dystonin)
           (Fragment)
          Length = 3214

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 147 GFPGLAETHRNPVHSLPRLASTG 215
           GFP LAET ++P+  LP +AS G
Sbjct: 11  GFPRLAETLQHPMCPLPLVASAG 33

>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 205  ANLGRLCTGFLCVSAKPGNPGTWIISAFIWPR 110
            AN+  L +  L  +A PG PGT I S+++ P+
Sbjct: 1066 ANISELNSMMLSTAATPGPPGTPICSSYLIPK 1097

>SALM_DROVI (P39806) Homeotic protein spalt-major|
          Length = 1402

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 144 PGFPGLAETHRNPVHSLPRLASTGIASAAWPKP 242
           P FPGL   +R P+  L  L +T  ++A  P P
Sbjct: 548 PAFPGLPGIYRPPMELLKSLGATAGSTAGLPHP 580

>C3AR_RAT (O55197) C3a anaphylatoxin chemotactic receptor (C3a-R) (C3AR)|
          Length = 473

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 249 RAAASATPRWRCRWTPTSAGCARGFCASPPSRETQERGSSAPSYG 115
           R A S++   R  WT T+A  ++ F  SP    +Q+  S  P YG
Sbjct: 209 RTAPSSSVPARDLWTATTALQSQTFHTSPEDPFSQDSASQQPHYG 253

>MURG_DECAR (Q47AA4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 352

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -1

Query: 229 AALAMPVDANLGRLCTGFLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAEY 50
           AA+A P +    R  TG L +    G+ G  +++  +   +A   ESDQ ++      ++
Sbjct: 164 AAIAAPAERFAER--TGALRLLVIGGSLGAQVLNEMVPQAMALLGESDQPQIVHQAGEKH 221

Query: 49  LGLTRANYA 23
           +   +ANYA
Sbjct: 222 IEALKANYA 230

>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B)
          Length = 323

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -3

Query: 200 PRQAVHGVSVRLRQAGKPRNVDHQRLHMASPRGRARVRPAACLQASHRG 54
           P  A  G  V   + G   +  H   H ASP   +   PA  L  SH G
Sbjct: 141 PHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPG 189

>DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1)|
          Length = 471

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 57  AVRGLKTRCWSDSSAAARRGHMKALMIHVPGFPGL 161
           A++G   +CWS   +     ++K  ++  P  PGL
Sbjct: 361 AIKGFLAKCWSLDISTKEYAYLKGTVLFNPDLPGL 395

>HAS1_ASPFU (Q4WQM4) ATP-dependent RNA helicase has1 (EC 3.6.1.-)|
          Length = 622

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
 Frame = +2

Query: 119 YEGADDPRSWVSRLGGDAQKPRA--------QPAEVGVHRH 217
           ++  DDPR ++ R+G  A+   A        QP+EVG  +H
Sbjct: 462 FDPPDDPRDYIHRVGRTARGTNAKGRSLMFLQPSEVGFLKH 502

>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 107 EARPYEGADDPRSWVSRLGGDAQKPRA 187
           E  P EGA DP   VSRL G  + P A
Sbjct: 180 EVAPTEGAPDPSPMVSRLRGRKEPPVA 206

>ATS15_MOUSE (P59384) ADAMTS-15 (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 15)
           (ADAM-TS 15) (ADAM-TS15) (Fragment)
          Length = 562

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = -2

Query: 249 RAAASATPRWRC-RWTPTSAGCARGFCASP 163
           RA     P W    W+P S  C RGF   P
Sbjct: 500 RACGEPCPTWELGNWSPCSKSCGRGFKRRP 529


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,580,471
Number of Sequences: 219361
Number of extensions: 711171
Number of successful extensions: 2468
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)